Wall clock time and date at job start Tue Mar 31 2020 11:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 110.88756 * 2 1 4 4 C 1.34775 * 120.00156 * 56.11437 * 3 2 1 5 5 O 1.21274 * 120.00029 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99765 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47242 * 300.00147 * 6 4 3 8 8 C 1.53002 * 109.46926 * 180.02562 * 6 4 3 9 9 C 1.52996 * 109.46880 * 179.97438 * 8 6 4 10 10 C 1.52993 * 109.47253 * 60.00066 * 9 8 6 11 11 C 1.53002 * 109.47124 * 299.99785 * 10 9 8 12 12 F 1.39907 * 109.47154 * 180.02562 * 11 10 9 13 13 F 1.39894 * 109.46879 * 299.99839 * 11 10 9 14 14 C 1.52993 * 109.47255 * 60.00228 * 6 4 3 15 15 C 1.55156 * 111.00672 * 236.11487 * 2 1 3 16 16 C 1.54322 * 102.94542 * 206.39139 * 15 2 1 17 17 N 1.47016 * 107.40169 * 22.11215 * 16 15 2 18 18 C 1.36935 * 125.64824 * 181.10494 * 17 16 15 19 19 H 1.08009 * 119.99965 * 173.88672 * 18 17 16 20 20 C 1.38807 * 120.00079 * 353.88343 * 18 17 16 21 21 N 1.31617 * 119.99906 * 6.82734 * 20 18 17 22 22 Si 1.86807 * 120.00016 * 186.82351 * 20 18 17 23 23 H 1.48501 * 109.46673 * 94.98788 * 22 20 18 24 24 H 1.48498 * 109.46962 * 214.98492 * 22 20 18 25 25 H 1.48490 * 109.47113 * 334.98916 * 22 20 18 26 26 C 1.47747 * 108.53089 * 1.18323 * 17 16 15 27 27 H 1.09000 * 109.47106 * 183.87787 * 1 2 3 28 28 H 1.08996 * 109.47304 * 303.88471 * 1 2 3 29 29 H 1.09004 * 109.46778 * 63.88287 * 1 2 3 30 30 H 0.97005 * 119.99421 * 236.11924 * 3 2 1 31 31 H 1.09000 * 109.47123 * 300.00028 * 8 6 4 32 32 H 1.09004 * 109.47054 * 59.99607 * 8 6 4 33 33 H 1.09004 * 109.46917 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47186 * 299.99515 * 9 8 6 35 35 H 1.09005 * 109.47474 * 59.99626 * 10 9 8 36 36 H 1.09002 * 109.47406 * 179.97438 * 10 9 8 37 37 H 1.09007 * 109.47376 * 299.99964 * 14 6 4 38 38 H 1.09005 * 109.47474 * 59.99684 * 14 6 4 39 39 H 1.09000 * 110.72008 * 88.01977 * 15 2 1 40 40 H 1.09011 * 110.87056 * 324.82180 * 15 2 1 41 41 H 1.08998 * 109.88471 * 141.61061 * 16 15 2 42 42 H 1.08999 * 109.88004 * 262.62071 * 16 15 2 43 43 H 0.97003 * 119.99609 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.29824 * 216.94324 * 26 17 16 45 45 H 1.09003 * 110.52443 * 94.67246 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 0.9689 5 8 0.9217 1.8725 1.8411 6 6 2.2216 3.6385 0.9685 7 1 3.3090 3.6127 1.0378 8 6 1.6526 4.4015 2.1664 9 6 2.1982 5.8309 2.1664 10 6 1.7862 6.5340 0.8715 11 6 2.3552 5.7709 -0.3264 12 9 1.9790 6.4142 -1.5105 13 9 3.7509 5.7374 -0.2377 14 6 1.8096 4.3410 -0.3266 15 6 2.0862 -0.8075 -1.2024 16 6 3.4679 -1.2732 -0.6967 17 7 3.4318 -1.2415 0.7727 18 6 4.4715 -1.5633 1.6036 19 1 4.3774 -1.4140 2.6692 20 6 5.6464 -2.0816 1.0766 21 7 5.8136 -2.1386 -0.2277 22 14 6.9903 -2.6980 2.2184 23 1 6.8454 -4.1637 2.4073 24 1 8.3187 -2.4045 1.6231 25 1 6.8749 -2.0157 3.5322 26 6 2.0861 -0.8064 1.2001 27 1 -0.3633 -1.0253 0.0695 28 1 -0.3634 0.5729 0.8531 29 1 -0.3633 0.4524 -0.9228 30 1 2.6628 1.6548 -0.6975 31 1 0.5651 4.4273 2.0976 32 1 1.9464 3.9008 3.0890 33 1 1.7925 6.3747 3.0196 34 1 3.2857 5.8047 2.2356 35 1 0.6987 6.5602 0.8023 36 1 2.1745 7.5525 0.8716 37 1 2.2152 3.7973 -1.1799 38 1 0.7220 4.3668 -0.3960 39 1 2.1916 -0.1695 -2.0798 40 1 1.4482 -1.6632 -1.4240 41 1 3.6658 -2.2883 -1.0409 42 1 4.2429 -0.6000 -1.0631 43 1 6.6349 -2.5004 -0.5960 44 1 2.1567 -0.1718 2.0835 45 1 1.4521 -1.6695 1.4035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046613481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:43 Heat of formation + Delta-G solvation = -129.327317 kcal Electronic energy + Delta-G solvation = -28315.856163 eV Core-core repulsion = 24196.817522 eV Total energy + Delta-G solvation = -4119.038641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.14074 -47.12297 -40.21105 -38.04714 -36.65651 -33.96183 -32.39266 -31.19415 -30.10648 -29.79074 -28.65962 -25.68593 -24.47496 -23.57688 -22.93023 -21.09794 -20.26530 -19.85951 -19.03186 -17.86008 -17.06790 -16.83132 -16.55096 -16.21688 -15.56699 -15.30756 -14.66680 -14.37516 -14.32021 -14.09575 -13.71944 -13.56575 -13.45519 -13.33976 -13.14179 -12.90903 -12.73227 -12.47374 -12.15580 -11.92006 -11.89362 -11.75644 -11.68612 -11.44456 -11.05499 -10.94017 -10.90865 -10.87008 -10.65345 -10.37179 -10.35971 -10.07265 -10.00181 -9.65884 -9.20180 -8.65978 -8.52583 -6.79748 -5.72136 -3.03111 2.84629 3.34338 3.40881 3.46592 3.48054 3.58511 3.86140 4.07621 4.12572 4.50921 4.64454 4.70464 4.78913 4.89936 5.01457 5.06781 5.14974 5.27003 5.38431 5.42816 5.45859 5.55654 5.59751 5.60835 5.66752 5.72495 5.78709 6.01229 6.02477 6.12392 6.14936 6.15942 6.35963 6.39827 6.52904 6.67195 6.78814 7.11303 7.51438 7.58752 7.80000 7.88038 8.25742 8.53609 9.23025 9.83178 10.50188 11.40316 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.003949 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.784924 B = 7088.836056 C = 7694.103893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 N -0.699 5.699 4 C 0.524 3.476 5 O -0.537 6.537 6 C -0.108 4.108 7 H 0.107 0.893 8 C -0.102 4.102 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.291 3.709 12 F -0.203 7.203 13 F -0.196 7.196 14 C -0.149 4.149 15 C -0.147 4.147 16 C 0.176 3.824 17 N -0.603 5.603 18 C -0.224 4.224 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.133 3.867 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.398 0.602 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.049 0.951 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 16.131 -1.547 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.069 3.931 3 N -0.349 5.349 4 C 0.310 3.690 5 O -0.415 6.415 6 C -0.129 4.129 7 H 0.125 0.875 8 C -0.140 4.140 9 C -0.158 4.158 10 C -0.196 4.196 11 C 0.255 3.745 12 F -0.183 7.183 13 F -0.177 7.177 14 C -0.187 4.187 15 C -0.185 4.185 16 C 0.051 3.949 17 N -0.330 5.330 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.007 3.993 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.232 0.768 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.814 15.783 -0.972 19.157 hybrid contribution 1.347 -0.224 -0.094 1.369 sum -9.467 15.559 -1.066 18.244 Atomic orbital electron populations 1.22032 0.94225 1.02416 1.02403 1.21493 0.92687 0.80804 0.98084 1.45857 1.48393 1.11853 1.28814 1.20134 0.81024 0.86417 0.81469 1.90633 1.35781 1.78508 1.36538 1.21319 1.03276 0.92883 0.95446 0.87479 1.21412 1.01211 0.93759 0.97624 1.21559 1.02265 0.95823 0.96114 1.22547 1.03110 1.00290 0.93659 1.21051 0.76589 0.93796 0.83084 1.93012 1.91170 1.83640 1.50525 1.93017 1.31040 1.97317 1.96355 1.22500 1.03746 0.93026 0.99472 1.23221 1.00480 0.98933 0.95898 1.21158 0.89929 1.00003 0.83799 1.44503 1.07409 1.79313 1.01727 1.19053 0.91863 1.34758 0.89514 0.90608 1.24780 0.98157 1.01433 0.95981 1.69961 1.26470 1.51193 1.09357 0.86139 0.81310 0.78897 0.79717 1.21648 1.21818 1.20682 1.21916 0.87584 0.94909 0.94934 0.91944 0.90332 0.93292 0.76772 0.90673 0.90003 0.90111 0.90680 0.88718 0.89504 0.88936 0.88242 0.91816 0.90868 0.93559 0.94037 0.93844 0.93290 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.59 37.16 0.32 -1.96 16 2 C 0.16 2.69 0.82 -129.67 -0.11 2.59 16 3 N -0.70 -10.90 5.07 -45.63 -0.23 -11.13 16 4 C 0.52 7.95 6.53 -10.98 -0.07 7.88 16 5 O -0.54 -9.59 12.81 5.56 0.07 -9.52 16 6 C -0.11 -1.26 2.40 -91.77 -0.22 -1.48 16 7 H 0.11 1.32 7.80 -51.93 -0.41 0.91 16 8 C -0.10 -1.05 4.49 -26.73 -0.12 -1.18 16 9 C -0.12 -0.97 5.80 -26.74 -0.16 -1.13 16 10 C -0.16 -1.23 5.45 -26.73 -0.15 -1.38 16 11 C 0.29 2.93 2.10 -26.71 -0.06 2.87 16 12 F -0.20 -2.27 17.06 2.25 0.04 -2.23 16 13 F -0.20 -2.37 16.02 2.25 0.04 -2.33 16 14 C -0.15 -1.46 4.64 -26.71 -0.12 -1.59 16 15 C -0.15 -2.57 5.97 -24.90 -0.15 -2.72 16 16 C 0.18 4.12 5.37 -3.07 -0.02 4.10 16 17 N -0.60 -15.33 3.40 -169.82 -0.58 -15.91 16 18 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 19 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 20 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 21 N -0.92 -26.85 10.36 55.49 0.57 -26.27 16 22 Si 0.91 22.30 29.56 -169.99 -5.02 17.28 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.13 2.89 6.19 -2.35 -0.01 2.87 16 27 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 28 H 0.08 1.27 5.92 -51.93 -0.31 0.97 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.40 5.66 7.93 -40.82 -0.32 5.34 16 31 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.66 7.80 -51.93 -0.41 0.25 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.89 7.57 -51.92 -0.39 0.50 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 40 H 0.07 1.21 8.04 -51.92 -0.42 0.79 16 41 H 0.05 1.22 7.36 -51.93 -0.38 0.83 16 42 H 0.04 1.06 7.54 -51.93 -0.39 0.67 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.05 1.14 6.86 -51.93 -0.36 0.78 16 45 H 0.03 0.56 7.98 -51.93 -0.41 0.14 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -31.76 353.75 -8.03 -39.79 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.14 Total: 2.87 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.11 Total: 2.13 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.23 Total: -53.31 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.07 Total: -4.57 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.76 -8.03 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046613481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.538 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds