Wall clock time and date at job start Tue Mar 31 2020 11:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 110.64224 * 2 1 4 4 C 1.34779 * 119.99684 * 303.14267 * 3 2 1 5 5 O 1.21287 * 120.00160 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99688 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47295 * 299.99742 * 6 4 3 8 8 C 1.53003 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46628 * 60.00224 * 8 7 6 10 10 F 1.39901 * 109.47133 * 179.97438 * 9 8 7 11 11 F 1.39903 * 109.47158 * 60.00247 * 9 8 7 12 12 C 1.52997 * 109.47128 * 299.99843 * 9 8 7 13 13 C 1.52996 * 109.47380 * 60.00083 * 12 9 8 14 14 C 1.55151 * 110.71741 * 123.13968 * 2 1 3 15 15 C 1.54914 * 101.58023 * 153.86287 * 14 2 1 16 16 N 1.47420 * 104.83159 * 322.99181 * 15 14 2 17 17 C 1.36945 * 125.64792 * 204.08975 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47020 * 108.70626 * 24.35323 * 16 15 14 26 26 H 1.08995 * 109.47166 * 296.86362 * 1 2 3 27 27 H 1.09000 * 109.47069 * 56.85827 * 1 2 3 28 28 H 1.08991 * 109.47197 * 176.86005 * 1 2 3 29 29 H 0.96989 * 119.99863 * 123.14184 * 3 2 1 30 30 H 1.09005 * 109.47007 * 60.00224 * 6 4 3 31 31 H 1.08995 * 109.47076 * 300.00511 * 7 6 4 32 32 H 1.09002 * 109.47126 * 60.00425 * 7 6 4 33 33 H 1.08992 * 109.47131 * 300.00763 * 8 7 6 34 34 H 1.09000 * 109.47086 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46980 * 300.00029 * 12 9 8 36 36 H 1.09006 * 109.47069 * 180.02562 * 12 9 8 37 37 H 1.08999 * 109.47674 * 179.97438 * 13 12 9 38 38 H 1.09003 * 109.47108 * 60.00024 * 13 12 9 39 39 H 1.09002 * 111.00697 * 35.79181 * 14 2 1 40 40 H 1.08994 * 111.00548 * 271.93648 * 14 2 1 41 41 H 1.08999 * 110.37083 * 204.15142 * 15 14 2 42 42 H 1.08999 * 110.36305 * 81.82793 * 15 14 2 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.88406 * 118.12749 * 25 16 15 45 45 H 1.09001 * 109.88743 * 239.29401 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.6869 2.2265 -0.9774 5 8 0.9361 1.8613 -1.8571 6 6 2.2186 3.6366 -0.9777 7 6 1.7891 4.3439 0.3092 8 6 2.3295 5.7753 0.3091 9 6 1.7716 6.5309 -0.8987 10 9 2.2652 7.8400 -0.8985 11 9 0.3748 6.5598 -0.8262 12 6 2.2011 5.8236 -2.1856 13 6 1.6608 4.3922 -2.1855 14 6 2.0789 -0.7933 1.2151 15 6 3.4633 -1.2487 0.6896 16 7 3.2445 -1.5520 -0.7363 17 6 4.0043 -2.3996 -1.4977 18 1 3.7611 -2.5551 -2.5384 19 6 5.0869 -3.0587 -0.9318 20 7 5.3829 -2.8695 0.3366 21 14 6.1229 -4.2154 -1.9702 22 1 7.2104 -4.7886 -1.1372 23 1 5.2682 -5.3118 -2.4921 24 1 6.7141 -3.4648 -3.1070 25 6 2.0793 -0.7891 -1.2073 26 1 -0.3633 0.4643 0.9167 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0260 -0.0563 29 1 2.6472 1.6629 0.7033 30 1 3.3069 3.6145 -1.0344 31 1 0.7009 4.3659 0.3658 32 1 2.1869 3.8059 1.1697 33 1 3.4177 5.7528 0.2526 34 1 2.0231 6.2794 1.2258 35 1 3.2894 5.8012 -2.2420 36 1 1.8040 6.3622 -3.0461 37 1 1.9664 3.8884 -3.1025 38 1 0.5725 4.4146 -2.1291 39 1 1.4451 -1.6511 1.4403 40 1 2.1850 -0.1482 2.0872 41 1 3.7960 -2.1406 1.2205 42 1 4.1931 -0.4465 0.7992 43 1 6.1393 -3.3304 0.7321 44 1 2.3814 -0.1004 -1.9963 45 1 1.3155 -1.4714 -1.5804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046647409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:09 Heat of formation + Delta-G solvation = -128.195644 kcal Electronic energy + Delta-G solvation = -27953.759065 eV Core-core repulsion = 23834.769497 eV Total energy + Delta-G solvation = -4118.989568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.18032 -47.16422 -40.27744 -38.08862 -36.66594 -34.04563 -32.16439 -31.33734 -30.62678 -29.53646 -28.66203 -25.69577 -24.14046 -23.52813 -23.28918 -21.09241 -20.36052 -19.93282 -19.01022 -17.68640 -17.26008 -17.03327 -16.67268 -16.46562 -15.62076 -14.97316 -14.71229 -14.47066 -14.33607 -13.94422 -13.77826 -13.60232 -13.44991 -13.33487 -13.09672 -12.84508 -12.68072 -12.50720 -12.24966 -12.01923 -11.93359 -11.77314 -11.69144 -11.57655 -11.51050 -10.96731 -10.93712 -10.85445 -10.42315 -10.40442 -10.34573 -10.12976 -9.93905 -9.66562 -9.20210 -8.67859 -8.62294 -6.83019 -5.66717 -3.07233 2.85559 3.35496 3.40350 3.44325 3.45705 3.50073 3.79320 4.07142 4.10321 4.48609 4.53945 4.63538 4.76915 4.83353 4.94562 5.07148 5.16330 5.30035 5.38247 5.40858 5.45362 5.47939 5.49781 5.56406 5.66898 5.70313 5.73324 5.91339 6.04636 6.08382 6.16648 6.21725 6.35667 6.44960 6.51305 6.70051 6.80775 7.12713 7.42451 7.61648 7.78336 7.85733 8.33838 8.51044 9.21747 9.82497 10.47224 11.37497 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003153 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.336082 B = 8878.667698 C = 9296.797639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 N -0.706 5.706 4 C 0.521 3.479 5 O -0.536 6.536 6 C -0.114 4.114 7 C -0.110 4.110 8 C -0.156 4.156 9 C 0.286 3.714 10 F -0.205 7.205 11 F -0.199 7.199 12 C -0.158 4.158 13 C -0.098 4.098 14 C -0.147 4.147 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.219 4.219 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.138 3.862 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.397 0.603 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.252 0.748 44 H 0.030 0.970 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 17.537 2.499 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 N -0.357 5.357 4 C 0.306 3.694 5 O -0.413 6.413 6 C -0.135 4.135 7 C -0.148 4.148 8 C -0.194 4.194 9 C 0.250 3.750 10 F -0.186 7.186 11 F -0.180 7.180 12 C -0.196 4.196 13 C -0.136 4.136 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.213 1.213 25 C 0.012 3.988 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.231 0.769 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.201 17.141 1.883 18.687 hybrid contribution 0.929 -0.200 -0.164 0.964 sum -6.272 16.941 1.719 18.147 Atomic orbital electron populations 1.22066 0.94198 1.02412 1.02345 1.21356 0.93064 0.80449 0.97826 1.46006 1.49486 1.12070 1.28128 1.20267 0.80984 0.86565 0.81568 1.90658 1.36025 1.78222 1.36363 1.21443 1.02485 0.92815 0.96748 1.21503 1.02548 0.93591 0.97137 1.22513 1.03059 0.96664 0.97139 1.21169 0.75511 0.79273 0.99032 1.93004 1.87542 1.40306 1.97722 1.93000 1.30914 1.96548 1.97518 1.22560 1.03719 0.97508 0.95805 1.21301 1.02039 0.91974 0.98271 1.23354 1.01248 0.98871 0.95091 1.21931 0.89354 1.00575 0.85333 1.44503 1.30993 1.50083 1.07435 1.19052 1.06125 1.16574 0.93005 0.90618 1.24753 0.98762 1.00715 0.96460 1.69766 1.30207 1.46519 1.10911 0.86150 0.79741 0.80656 0.78961 1.21581 1.21149 1.21285 1.21592 0.90299 0.93074 0.93867 0.93265 0.90501 0.91887 0.76915 0.88028 0.90206 0.89784 0.88404 0.89150 0.88628 0.89190 0.89476 0.90064 0.90581 0.91944 0.87457 0.97248 0.93756 0.95242 0.95265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.43 37.16 0.31 -2.04 16 2 C 0.16 2.75 0.81 -129.98 -0.10 2.64 16 3 N -0.71 -10.34 5.04 -45.90 -0.23 -10.57 16 4 C 0.52 7.55 6.37 -10.99 -0.07 7.48 16 5 O -0.54 -9.59 12.96 5.55 0.07 -9.51 16 6 C -0.11 -1.17 2.52 -91.77 -0.23 -1.41 16 7 C -0.11 -0.91 4.98 -26.73 -0.13 -1.05 16 8 C -0.16 -1.15 5.45 -26.73 -0.15 -1.30 16 9 C 0.29 2.65 2.10 -26.73 -0.06 2.60 16 10 F -0.20 -2.14 17.06 2.25 0.04 -2.11 16 11 F -0.20 -2.23 16.03 2.25 0.04 -2.20 16 12 C -0.16 -1.32 5.45 -26.73 -0.15 -1.47 16 13 C -0.10 -1.01 4.37 -26.73 -0.12 -1.12 16 14 C -0.15 -2.58 6.07 -24.58 -0.15 -2.73 16 15 C 0.15 3.54 5.87 -2.53 -0.01 3.52 16 16 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 17 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.14 3.03 6.20 -3.06 -0.02 3.02 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.29 5.97 -51.93 -0.31 0.98 16 28 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.40 4.93 7.90 -40.82 -0.32 4.60 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 32 H 0.08 0.59 7.56 -51.93 -0.39 0.20 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.97 8.10 -51.93 -0.42 0.54 16 38 H 0.08 0.94 7.76 -51.93 -0.40 0.53 16 39 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 40 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.11 2.82 5.87 -51.93 -0.30 2.52 16 42 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.03 0.70 6.91 -51.93 -0.36 0.34 16 45 H 0.03 0.66 7.77 -51.93 -0.40 0.26 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -31.86 352.80 -8.02 -39.87 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.08 Total: 2.64 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.12 Total: 1.41 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.25 Total: -52.45 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.30 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.86 -8.02 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046647409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.324 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds