Wall clock time and date at job start Tue Mar 31 2020 11:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 110.64224 * 2 1 4 4 C 1.34779 * 119.99684 * 303.14267 * 3 2 1 5 5 O 1.21287 * 120.00160 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99688 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47295 * 299.99742 * 6 4 3 8 8 C 1.53003 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46628 * 60.00224 * 8 7 6 10 10 F 1.39901 * 109.47133 * 179.97438 * 9 8 7 11 11 F 1.39903 * 109.47158 * 60.00247 * 9 8 7 12 12 C 1.52997 * 109.47128 * 299.99843 * 9 8 7 13 13 C 1.52996 * 109.47380 * 60.00083 * 12 9 8 14 14 C 1.55151 * 110.71741 * 123.13968 * 2 1 3 15 15 C 1.54914 * 101.58023 * 153.86287 * 14 2 1 16 16 N 1.47420 * 104.83159 * 322.99181 * 15 14 2 17 17 C 1.36945 * 125.64792 * 204.08975 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47020 * 108.70626 * 24.35323 * 16 15 14 26 26 H 1.08995 * 109.47166 * 296.86362 * 1 2 3 27 27 H 1.09000 * 109.47069 * 56.85827 * 1 2 3 28 28 H 1.08991 * 109.47197 * 176.86005 * 1 2 3 29 29 H 0.96989 * 119.99863 * 123.14184 * 3 2 1 30 30 H 1.09005 * 109.47007 * 60.00224 * 6 4 3 31 31 H 1.08995 * 109.47076 * 300.00511 * 7 6 4 32 32 H 1.09002 * 109.47126 * 60.00425 * 7 6 4 33 33 H 1.08992 * 109.47131 * 300.00763 * 8 7 6 34 34 H 1.09000 * 109.47086 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46980 * 300.00029 * 12 9 8 36 36 H 1.09006 * 109.47069 * 180.02562 * 12 9 8 37 37 H 1.08999 * 109.47674 * 179.97438 * 13 12 9 38 38 H 1.09003 * 109.47108 * 60.00024 * 13 12 9 39 39 H 1.09002 * 111.00697 * 35.79181 * 14 2 1 40 40 H 1.08994 * 111.00548 * 271.93648 * 14 2 1 41 41 H 1.08999 * 110.37083 * 204.15142 * 15 14 2 42 42 H 1.08999 * 110.36305 * 81.82793 * 15 14 2 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.88406 * 118.12749 * 25 16 15 45 45 H 1.09001 * 109.88743 * 239.29401 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.6869 2.2265 -0.9774 5 8 0.9361 1.8613 -1.8571 6 6 2.2186 3.6366 -0.9777 7 6 1.7891 4.3439 0.3092 8 6 2.3295 5.7753 0.3091 9 6 1.7716 6.5309 -0.8987 10 9 2.2652 7.8400 -0.8985 11 9 0.3748 6.5598 -0.8262 12 6 2.2011 5.8236 -2.1856 13 6 1.6608 4.3922 -2.1855 14 6 2.0789 -0.7933 1.2151 15 6 3.4633 -1.2487 0.6896 16 7 3.2445 -1.5520 -0.7363 17 6 4.0043 -2.3996 -1.4977 18 1 3.7611 -2.5551 -2.5384 19 6 5.0869 -3.0587 -0.9318 20 7 5.3829 -2.8695 0.3366 21 14 6.1229 -4.2154 -1.9702 22 1 7.2104 -4.7886 -1.1372 23 1 5.2682 -5.3118 -2.4921 24 1 6.7141 -3.4648 -3.1070 25 6 2.0793 -0.7891 -1.2073 26 1 -0.3633 0.4643 0.9167 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0260 -0.0563 29 1 2.6472 1.6629 0.7033 30 1 3.3069 3.6145 -1.0344 31 1 0.7009 4.3659 0.3658 32 1 2.1869 3.8059 1.1697 33 1 3.4177 5.7528 0.2526 34 1 2.0231 6.2794 1.2258 35 1 3.2894 5.8012 -2.2420 36 1 1.8040 6.3622 -3.0461 37 1 1.9664 3.8884 -3.1025 38 1 0.5725 4.4146 -2.1291 39 1 1.4451 -1.6511 1.4403 40 1 2.1850 -0.1482 2.0872 41 1 3.7960 -2.1406 1.2205 42 1 4.1931 -0.4465 0.7992 43 1 6.1393 -3.3304 0.7321 44 1 2.3814 -0.1004 -1.9963 45 1 1.3155 -1.4714 -1.5804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046647409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:08 Heat of formation + Delta-G solvation = -147.677567 kcal Electronic energy + Delta-G solvation = -27954.603865 eV Core-core repulsion = 23834.769497 eV Total energy + Delta-G solvation = -4119.834368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.94081 -47.94069 -41.48173 -39.37806 -37.78279 -35.71246 -33.72051 -32.19799 -31.91042 -30.78409 -30.21647 -27.54012 -25.55138 -24.63985 -24.10582 -22.31236 -21.92435 -20.87156 -20.37899 -19.00576 -18.41028 -18.00023 -17.81707 -17.21601 -17.10233 -16.67798 -16.02883 -15.63737 -15.59084 -15.13476 -14.82158 -14.80483 -14.43265 -14.31239 -14.18235 -14.06252 -13.93753 -13.56572 -13.41194 -13.30563 -13.26762 -12.97709 -12.84387 -12.75627 -12.72883 -12.58488 -12.20067 -12.08189 -12.02236 -11.94675 -11.71771 -11.66443 -11.49099 -11.11236 -10.74128 -10.46774 -9.96556 -8.88068 -7.78405 -5.21856 1.45885 1.48211 1.54866 1.72335 2.22781 2.48879 2.82210 3.13089 3.29758 3.33055 3.42665 3.64225 3.72412 3.77391 3.87930 3.99085 4.04921 4.08790 4.19821 4.31572 4.33715 4.63620 4.64806 4.66540 4.70569 4.81604 4.83474 4.87902 4.88085 4.91952 4.98167 5.01551 5.04130 5.11436 5.17217 5.28509 5.36831 5.43209 5.63224 5.73041 5.82298 6.31966 6.69294 7.11812 7.37288 7.77914 8.41122 9.22499 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003153 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.336082 B = 8878.667698 C = 9296.797639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 N -0.702 5.702 4 C 0.516 3.484 5 O -0.574 6.574 6 C -0.105 4.105 7 C -0.104 4.104 8 C -0.150 4.150 9 C 0.278 3.722 10 F -0.212 7.212 11 F -0.214 7.214 12 C -0.152 4.152 13 C -0.094 4.094 14 C -0.128 4.128 15 C 0.155 3.845 16 N -0.623 5.623 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.280 1.280 24 H -0.282 1.282 25 C 0.138 3.862 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.410 0.590 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.074 0.926 42 H -0.003 1.003 43 H 0.249 0.751 44 H 0.007 0.993 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 18.712 3.739 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 N -0.353 5.353 4 C 0.303 3.697 5 O -0.453 6.453 6 C -0.127 4.127 7 C -0.142 4.142 8 C -0.187 4.187 9 C 0.242 3.758 10 F -0.193 7.193 11 F -0.195 7.195 12 C -0.190 4.190 13 C -0.133 4.133 14 C -0.166 4.166 15 C 0.031 3.969 16 N -0.349 5.349 17 C -0.374 4.374 18 H 0.086 0.914 19 C -0.251 4.251 20 N -0.592 5.592 21 Si 0.805 3.195 22 H -0.214 1.214 23 H -0.206 1.206 24 H -0.208 1.208 25 C 0.012 3.988 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.015 0.985 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.873 18.346 3.141 19.841 hybrid contribution 0.818 -0.570 -0.616 1.172 sum -6.055 17.776 2.524 18.948 Atomic orbital electron populations 1.21978 0.92449 1.02556 1.03128 1.21116 0.94136 0.81287 0.95120 1.45920 1.49709 1.10900 1.28796 1.21018 0.80145 0.87942 0.80566 1.90648 1.37752 1.79202 1.37717 1.21455 1.03195 0.90019 0.97988 1.21481 1.02039 0.94219 0.96422 1.22529 1.04161 0.95452 0.96607 1.21489 0.74813 0.79155 1.00309 1.92989 1.87539 1.40915 1.97813 1.92974 1.32280 1.96598 1.97631 1.22528 1.04843 0.95867 0.95753 1.21214 1.01031 0.93200 0.97809 1.23199 0.97481 0.99679 0.96262 1.21759 0.92322 0.98750 0.84103 1.44779 1.31539 1.50110 1.08504 1.19329 1.07118 1.17657 0.93309 0.91353 1.25514 0.99773 1.02125 0.97688 1.70001 1.30243 1.46977 1.11951 0.85186 0.78075 0.78729 0.77524 1.21355 1.20569 1.20821 1.21668 0.89002 0.92620 0.95551 0.90416 0.91967 0.91856 0.75294 0.86245 0.91300 0.87744 0.86318 0.87976 0.86625 0.88965 0.90813 0.91831 0.90250 0.87903 0.90756 0.98541 0.94147 0.97512 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.43 71.98 0.61 -3.59 16 2 C 0.17 5.67 0.81 4.80 0.00 5.68 16 3 N -0.70 -19.28 5.04 -417.53 -2.10 -21.38 16 4 C 0.52 14.46 6.37 87.66 0.56 15.02 16 5 O -0.57 -20.72 12.96 -3.05 -0.04 -20.76 16 6 C -0.11 -1.99 2.52 -11.54 -0.03 -2.02 16 7 C -0.10 -1.43 4.98 30.59 0.15 -1.28 16 8 C -0.15 -1.74 5.45 30.60 0.17 -1.57 16 9 C 0.28 4.60 2.10 30.60 0.06 4.67 16 10 F -0.21 -4.01 17.06 44.97 0.77 -3.24 16 11 F -0.21 -4.57 16.03 44.97 0.72 -3.85 16 12 C -0.15 -2.29 5.45 30.59 0.17 -2.12 16 13 C -0.09 -1.87 4.37 30.59 0.13 -1.74 16 14 C -0.13 -4.23 6.07 31.99 0.19 -4.04 16 15 C 0.16 7.18 5.87 86.86 0.51 7.69 16 16 N -0.62 -32.39 3.39 -691.97 -2.35 -34.74 16 17 C -0.25 -14.07 10.27 84.03 0.86 -13.20 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 19 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 20 N -0.94 -54.52 10.09 21.65 0.22 -54.31 16 21 Si 0.98 45.64 29.55 68.60 2.03 47.66 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 25 C 0.14 6.16 6.20 86.73 0.54 6.70 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.05 5.97 -2.39 -0.01 2.03 16 28 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 29 H 0.41 8.99 7.90 -92.72 -0.73 8.25 16 30 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.07 1.14 7.80 -2.39 -0.02 1.12 16 32 H 0.10 1.05 7.56 -2.39 -0.02 1.03 16 33 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 38 H 0.06 1.48 7.76 -2.39 -0.02 1.46 16 39 H 0.08 2.62 8.05 -2.39 -0.02 2.60 16 40 H 0.10 2.61 8.07 -2.39 -0.02 2.59 16 41 H 0.07 3.97 5.87 -2.39 -0.01 3.95 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.01 0.34 6.91 -2.39 -0.02 0.32 16 45 H 0.02 0.78 7.77 -2.39 -0.02 0.76 16 Total: -1.00 -71.25 352.80 3.90 -67.35 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.26 Total: 15.88 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.39 Total: 7.39 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.23 Total: -110.42 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.04 Total: -20.76 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.49 Total: -7.10 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.25 3.90 -67.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046647409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.329 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds