Wall clock time and date at job start Tue Mar 31 2020 11:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53774 * 113.61076 * 2 1 4 4 C 1.53785 * 87.08213 * 219.93349 * 3 2 1 5 5 C 1.50696 * 113.61556 * 139.98262 * 4 3 2 6 6 O 1.21282 * 120.00262 * 1.52772 * 5 4 3 7 7 N 1.34780 * 119.99732 * 181.80811 * 5 4 3 8 8 C 1.46503 * 119.99697 * 179.72192 * 7 5 4 9 9 C 1.52999 * 109.46781 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.50153 * 55.06768 * 9 8 7 11 11 C 1.53190 * 109.50002 * 294.99916 * 9 8 7 12 12 N 1.46921 * 108.77489 * 185.41422 * 11 9 8 13 13 C 1.36937 * 120.62958 * 233.62709 * 12 11 9 14 14 H 1.07999 * 120.00045 * 27.97237 * 13 12 11 15 15 C 1.38815 * 120.00323 * 207.96319 * 13 12 11 16 16 N 1.31620 * 119.99897 * 17.50489 * 15 13 12 17 17 Si 1.86796 * 120.00276 * 197.50958 * 15 13 12 18 18 H 1.48494 * 109.47366 * 94.06512 * 17 15 13 19 19 H 1.48503 * 109.47079 * 214.06618 * 17 15 13 20 20 H 1.48501 * 109.47063 * 334.06433 * 17 15 13 21 21 C 1.46926 * 118.73998 * 53.61647 * 12 11 9 22 22 C 1.53188 * 108.77153 * 306.38557 * 21 12 11 23 23 C 1.53040 * 109.31326 * 54.63609 * 22 21 12 24 24 F 1.39902 * 109.46014 * 178.61322 * 23 22 21 25 25 F 1.39897 * 109.45897 * 58.65479 * 23 22 21 26 26 C 1.53785 * 87.17060 * 25.39043 * 4 3 2 27 27 H 1.08997 * 109.46896 * 60.00274 * 1 2 3 28 28 H 1.09010 * 109.46814 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47219 * 299.99724 * 1 2 3 30 30 H 1.09001 * 112.84702 * 131.19780 * 2 1 3 31 31 H 1.09002 * 113.61464 * 105.38684 * 3 2 1 32 32 H 1.09000 * 113.62064 * 334.47898 * 3 2 1 33 33 H 1.09000 * 113.61426 * 270.80253 * 4 3 2 34 34 H 0.96996 * 120.00292 * 359.72272 * 7 5 4 35 35 H 1.08998 * 109.47531 * 300.00304 * 8 7 5 36 36 H 1.09001 * 109.47100 * 59.99992 * 8 7 5 37 37 H 1.09002 * 109.58997 * 305.20705 * 11 9 8 38 38 H 1.09001 * 109.58404 * 65.63092 * 11 9 8 39 39 H 0.96997 * 120.00093 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.58891 * 66.17411 * 21 12 11 41 41 H 1.08999 * 109.58773 * 186.60412 * 21 12 11 42 42 H 1.09000 * 109.49821 * 174.58678 * 22 21 12 43 43 H 1.08999 * 109.49795 * 294.68462 * 22 21 12 44 44 H 1.08999 * 113.61025 * 89.15886 * 26 4 3 45 45 H 1.08998 * 113.61648 * 220.06331 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1459 1.4090 0.0000 4 6 3.1937 0.8656 -0.9859 5 6 3.5436 1.8317 -2.0882 6 8 3.0307 2.9304 -2.1172 7 7 4.4222 1.4727 -3.0451 8 6 4.7577 2.4097 -4.1202 9 6 5.7701 1.7598 -5.0655 10 1 5.3740 0.8104 -5.4259 11 6 7.0842 1.5145 -4.3173 12 7 8.0838 1.0121 -5.2696 13 6 8.7587 -0.1535 -5.0225 14 1 8.2999 -0.9267 -4.4240 15 6 10.0324 -0.3416 -5.5414 16 7 10.7292 0.6913 -5.9658 17 14 10.7574 -2.0604 -5.6376 18 1 10.4891 -2.6365 -6.9797 19 1 12.2237 -1.9924 -5.4123 20 1 10.1360 -2.9187 -4.5973 21 6 8.3456 1.7839 -6.4921 22 6 7.0174 2.0262 -7.2159 23 6 6.0299 2.6894 -6.2532 24 9 4.8261 2.9408 -6.9203 25 9 6.5675 3.8957 -5.7919 26 6 2.1499 -0.1864 -1.3969 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.9533 -0.6616 0.7558 31 1 2.5636 1.7030 0.9629 32 1 1.4951 2.1702 -0.4303 33 1 4.0724 0.4420 -0.4996 34 1 4.8324 0.5940 -3.0220 35 1 3.8547 2.6654 -4.6744 36 1 5.1896 3.3143 -3.6921 37 1 7.4346 2.4487 -3.8784 38 1 6.9248 0.7763 -3.5314 39 1 11.6191 0.5599 -6.3287 40 1 8.7989 2.7400 -6.2306 41 1 9.0184 1.2235 -7.1411 42 1 7.1839 2.6787 -8.0730 43 1 6.6099 1.0743 -7.5566 44 1 1.5001 0.1378 -2.2097 45 1 2.5707 -1.1785 -1.5600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046926639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:23 Heat of formation + Delta-G solvation = -112.529980 kcal Electronic energy + Delta-G solvation = -27607.011202 eV Core-core repulsion = 23488.700948 eV Total energy + Delta-G solvation = -4118.310254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.53589 -46.48745 -40.40864 -38.18422 -37.19718 -34.94725 -32.71338 -31.09162 -30.34095 -29.98527 -26.21743 -25.82696 -25.22805 -23.96759 -22.40838 -21.41040 -20.40532 -19.63871 -19.44419 -17.48851 -16.89202 -16.80533 -16.28494 -15.89125 -15.50748 -15.32010 -15.26128 -14.79869 -14.18986 -14.06396 -13.67987 -13.58639 -13.31402 -13.26980 -13.10850 -12.80464 -12.70304 -12.67502 -12.31840 -12.23067 -11.71026 -11.67648 -11.56792 -11.42501 -11.25971 -11.05924 -10.86719 -10.72898 -10.64224 -10.52958 -10.44115 -10.10027 -9.94152 -9.82379 -9.54437 -8.98400 -8.63860 -6.92777 -5.96356 -3.41124 2.66589 3.18494 3.28020 3.35421 3.37071 4.19900 4.25328 4.34853 4.36385 4.50362 4.54517 4.62136 4.68333 4.89035 5.00257 5.16714 5.19973 5.25662 5.27445 5.40242 5.48085 5.48983 5.53272 5.56425 5.61869 5.64469 5.79269 5.86706 5.91070 6.00065 6.03090 6.13903 6.24787 6.27164 6.31210 6.41506 6.46291 6.67763 7.07691 7.42089 7.55636 7.62939 8.24090 8.27877 9.00164 9.62701 10.18242 11.12791 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.003641 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.498314 B = 7689.181039 C = 9218.311335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.139 4.139 5 C 0.522 3.478 6 O -0.544 6.544 7 N -0.721 5.721 8 C 0.124 3.876 9 C -0.155 4.155 10 H 0.101 0.899 11 C 0.153 3.847 12 N -0.590 5.590 13 C -0.263 4.263 14 H 0.070 0.930 15 C 0.007 3.993 16 N -0.898 5.898 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.170 3.830 22 C -0.178 4.178 23 C 0.300 3.700 24 F -0.214 7.214 25 F -0.199 7.199 26 C -0.120 4.120 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.257 0.743 40 H 0.033 0.967 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 -1.908 6.675 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.151 4.151 4 C -0.160 4.160 5 C 0.308 3.692 6 O -0.421 6.421 7 N -0.373 5.373 8 C 0.000 4.000 9 C -0.176 4.176 10 H 0.119 0.881 11 C 0.026 3.974 12 N -0.312 5.312 13 C -0.392 4.392 14 H 0.087 0.913 15 C -0.193 4.193 16 N -0.541 5.541 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.044 3.956 22 C -0.218 4.218 23 C 0.263 3.737 24 F -0.195 7.195 25 F -0.180 7.180 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.132 0.868 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.140 -1.079 6.584 16.545 hybrid contribution 0.700 -1.071 -0.245 1.303 sum -14.440 -2.150 6.339 15.915 Atomic orbital electron populations 1.21714 0.94620 1.01610 1.01978 1.22506 0.95883 0.97681 0.97352 1.22898 0.96788 0.96879 0.98500 1.22749 0.99450 0.97418 0.96432 1.20485 0.78311 0.87863 0.82542 1.90682 1.52714 1.22597 1.76133 1.45989 1.45286 1.19119 1.26895 1.21310 0.97929 0.92710 0.88048 1.22964 1.00136 0.99213 0.95308 0.88053 1.20907 0.86391 0.98275 0.91801 1.44094 1.44013 1.25336 1.17753 1.19169 0.95886 0.91818 1.32292 0.91275 1.25091 0.95476 0.97375 1.01319 1.70027 1.10974 1.28180 1.44969 0.86234 0.78262 0.83938 0.78053 1.21311 1.21661 1.20283 1.20837 0.90434 0.96135 0.88208 1.23269 0.99375 1.01141 0.98061 1.21035 0.79868 0.81198 0.91573 1.92956 1.48930 1.95167 1.82419 1.92966 1.86318 1.48802 1.89934 1.22992 0.96863 0.98221 0.97679 0.92493 0.92663 0.92457 0.89035 0.91095 0.88704 0.86795 0.76144 0.91188 0.90782 0.94973 0.91619 0.93311 0.94938 0.88180 0.90543 0.89583 0.89647 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.71 37.16 0.36 -0.66 16 2 C -0.12 -0.90 4.36 -89.72 -0.39 -1.29 16 3 C -0.11 -1.08 6.96 -25.92 -0.18 -1.26 16 4 C -0.14 -1.39 4.14 -90.96 -0.38 -1.77 16 5 C 0.52 7.13 7.35 -10.99 -0.08 7.05 16 6 O -0.54 -9.52 15.91 5.56 0.09 -9.43 16 7 N -0.72 -9.43 5.33 -60.29 -0.32 -9.76 16 8 C 0.12 1.90 4.83 -4.04 -0.02 1.88 16 9 C -0.15 -2.52 2.03 -90.50 -0.18 -2.71 16 10 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 11 C 0.15 2.92 5.40 -3.71 -0.02 2.90 16 12 N -0.59 -13.57 2.99 -172.33 -0.52 -14.09 16 13 C -0.26 -6.61 9.58 -15.06 -0.14 -6.75 16 14 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 15 C 0.01 0.18 4.90 -17.43 -0.09 0.10 16 16 N -0.90 -24.67 11.22 55.49 0.62 -24.05 16 17 Si 0.91 20.36 29.59 -169.99 -5.03 15.33 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 C 0.17 3.80 5.11 -3.71 -0.02 3.78 16 22 C -0.18 -3.26 5.62 -26.61 -0.15 -3.41 16 23 C 0.30 5.32 1.63 -26.69 -0.04 5.28 16 24 F -0.21 -3.72 16.41 2.25 0.04 -3.68 16 25 F -0.20 -3.85 15.72 2.25 0.04 -3.81 16 26 C -0.12 -1.02 7.20 -25.82 -0.19 -1.20 16 27 H 0.06 0.44 7.96 -51.93 -0.41 0.03 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.08 7.41 -51.93 -0.38 0.69 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 4.51 7.70 -40.82 -0.31 4.19 16 35 H 0.07 1.11 7.63 -51.93 -0.40 0.72 16 36 H 0.07 1.25 7.97 -51.93 -0.41 0.83 16 37 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 38 H 0.07 1.15 7.13 -51.93 -0.37 0.78 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 40 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 41 H 0.10 2.47 6.06 -51.93 -0.31 2.16 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -29.51 362.43 -8.34 -37.85 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.20 Total: 4.22 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.52 Total: 1.95 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.21 Total: -47.90 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.51 -8.34 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046926639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.681 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds