Wall clock time and date at job start Tue Mar 31 2020 11:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53777 * 113.61499 * 2 1 4 4 C 1.53777 * 87.08027 * 89.11773 * 3 2 1 5 5 C 1.50700 * 113.61252 * 139.98551 * 4 3 2 6 6 O 1.21278 * 120.00505 * 1.52392 * 5 4 3 7 7 N 1.34777 * 119.99811 * 181.52715 * 5 4 3 8 8 C 1.46500 * 120.00030 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47095 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.49725 * 304.93432 * 9 8 7 11 11 C 1.53184 * 109.50017 * 65.00607 * 9 8 7 12 12 N 1.46922 * 108.78090 * 174.61501 * 11 9 8 13 13 C 1.36944 * 120.62724 * 126.36533 * 12 11 9 14 14 H 1.07996 * 119.99883 * 332.24736 * 13 12 11 15 15 C 1.38815 * 119.99550 * 152.25364 * 13 12 11 16 16 N 1.31616 * 119.99546 * 143.92291 * 15 13 12 17 17 Si 1.86793 * 120.00026 * 323.92143 * 15 13 12 18 18 H 1.48508 * 109.47243 * 270.00310 * 17 15 13 19 19 H 1.48499 * 109.47372 * 30.00203 * 17 15 13 20 20 H 1.48499 * 109.47114 * 150.00468 * 17 15 13 21 21 C 1.46926 * 118.73901 * 306.64363 * 12 11 9 22 22 C 1.52760 * 109.00542 * 53.30635 * 21 12 11 23 23 C 1.53033 * 109.38517 * 305.58761 * 22 21 12 24 24 F 1.39906 * 109.46000 * 301.22354 * 23 22 21 25 25 F 1.39898 * 109.45235 * 181.25697 * 23 22 21 26 26 C 1.53775 * 87.17343 * 25.39284 * 4 3 2 27 27 H 1.09000 * 109.47695 * 59.99975 * 1 2 3 28 28 H 1.09002 * 109.47568 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47261 * 300.00112 * 1 2 3 30 30 H 1.09005 * 112.84782 * 228.80328 * 2 1 3 31 31 H 1.09002 * 113.61417 * 334.56526 * 3 2 1 32 32 H 1.09002 * 113.69418 * 203.67949 * 3 2 1 33 33 H 1.09006 * 113.61435 * 270.79602 * 4 3 2 34 34 H 0.96994 * 120.00168 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.47101 * 60.00560 * 8 7 5 36 36 H 1.09004 * 109.47567 * 300.00584 * 8 7 5 37 37 H 1.09004 * 109.59009 * 54.82568 * 11 9 8 38 38 H 1.09008 * 109.58427 * 294.40520 * 11 9 8 39 39 H 0.97000 * 120.00874 * 354.92255 * 16 15 13 40 40 H 1.09006 * 109.58277 * 173.13948 * 21 12 11 41 41 H 1.08999 * 109.58329 * 293.56746 * 21 12 11 42 42 H 1.09005 * 109.56078 * 185.55286 * 22 21 12 43 43 H 1.09006 * 109.36173 * 65.50153 * 22 21 12 44 44 H 1.08994 * 113.61604 * 89.16165 * 26 4 3 45 45 H 1.09000 * 113.61222 * 220.06426 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1459 1.4090 0.0000 4 6 2.0929 1.3467 1.5356 5 6 3.3078 1.9347 2.2059 6 8 4.1938 2.4218 1.5362 7 7 3.4098 1.9191 3.5497 8 6 4.5910 2.4902 4.2014 9 6 4.4570 2.3446 5.7185 10 1 3.5205 2.7961 6.0460 11 6 4.4669 0.8591 6.0925 12 7 4.4680 0.7400 7.5569 13 6 3.5242 -0.0192 8.1958 14 1 2.5531 -0.1644 7.7461 15 6 3.8158 -0.6020 9.4215 16 7 2.8816 -0.6971 10.3437 17 14 5.5339 -1.2512 9.7618 18 1 5.6168 -2.6743 9.3456 19 1 6.5253 -0.4532 8.9965 20 1 5.8256 -1.1423 11.2138 21 6 5.4972 1.4559 8.3231 22 6 5.4791 2.9303 7.9238 23 6 5.6304 3.0472 6.4055 24 9 6.8301 2.4465 6.0090 25 9 5.6428 4.3978 6.0411 26 6 2.1448 -0.1841 1.3993 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.9532 -0.6616 -0.7559 31 1 1.4944 2.1704 -0.4289 32 1 3.1590 1.4442 -0.4009 33 1 1.1574 1.7163 1.9555 34 1 2.7014 1.5292 4.0854 35 1 4.6736 3.5460 3.9433 36 1 5.4831 1.9628 3.8635 37 1 5.3611 0.3860 5.6867 38 1 3.5786 0.3744 5.6871 39 1 2.0113 -0.2950 10.1959 40 1 5.2884 1.3648 9.3891 41 1 6.4771 1.0325 8.1029 42 1 6.3026 3.4509 8.4126 43 1 4.5329 3.3762 8.2306 44 1 3.1575 -0.5868 1.3818 45 1 1.4923 -0.7071 2.0985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046926644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:27 Heat of formation + Delta-G solvation = -106.939295 kcal Electronic energy + Delta-G solvation = -27792.105616 eV Core-core repulsion = 23674.037792 eV Total energy + Delta-G solvation = -4118.067824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.69766 -46.64935 -40.50233 -38.33367 -37.42328 -35.07387 -32.82194 -31.33614 -30.60413 -29.79231 -26.51062 -25.85554 -24.97575 -24.42654 -22.34948 -21.60548 -20.64814 -19.83507 -18.80219 -17.85849 -17.46615 -17.05919 -16.48662 -15.90363 -15.70208 -15.43396 -15.08946 -14.72540 -14.34901 -14.31324 -13.81155 -13.66941 -13.50981 -13.31022 -13.16308 -13.02145 -12.96340 -12.61792 -12.50505 -12.27590 -12.14681 -11.94140 -11.72685 -11.52774 -11.47740 -11.18159 -10.92552 -10.63896 -10.55428 -10.50340 -10.44065 -10.05155 -9.78015 -9.64734 -9.37829 -9.05285 -8.45277 -7.23142 -6.52499 -3.43919 2.61725 3.12057 3.42426 3.50810 3.63399 4.05531 4.24208 4.33598 4.40284 4.46337 4.48358 4.53082 4.53965 4.73057 4.82964 4.96750 5.14160 5.15245 5.24268 5.25082 5.33756 5.43626 5.49771 5.51341 5.59202 5.66972 5.72688 5.78461 5.85614 5.87704 5.92696 6.00573 6.01383 6.12869 6.20718 6.23605 6.36987 6.45984 6.51063 6.71202 7.49405 7.85589 8.22220 8.27712 8.83946 9.44595 10.03105 10.88549 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.003932 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.464866 B = 7119.192833 C = 8587.920553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.138 4.138 5 C 0.522 3.478 6 O -0.544 6.544 7 N -0.722 5.722 8 C 0.124 3.876 9 C -0.155 4.155 10 H 0.103 0.897 11 C 0.152 3.848 12 N -0.597 5.597 13 C -0.371 4.371 14 H 0.067 0.933 15 C 0.010 3.990 16 N -0.892 5.892 17 Si 1.013 2.987 18 H -0.295 1.295 19 H -0.268 1.268 20 H -0.292 1.292 21 C 0.142 3.858 22 C -0.175 4.175 23 C 0.302 3.698 24 F -0.199 7.199 25 F -0.210 7.210 26 C -0.120 4.120 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.269 0.731 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 4.557 -15.112 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.150 4.150 4 C -0.159 4.159 5 C 0.308 3.692 6 O -0.421 6.421 7 N -0.374 5.374 8 C 0.000 4.000 9 C -0.177 4.177 10 H 0.121 0.879 11 C 0.025 3.975 12 N -0.320 5.320 13 C -0.498 4.498 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.527 5.527 17 Si 0.841 3.159 18 H -0.223 1.223 19 H -0.194 1.194 20 H -0.218 1.218 21 C 0.016 3.984 22 C -0.215 4.215 23 C 0.265 3.735 24 F -0.180 7.180 25 F -0.191 7.191 26 C -0.158 4.158 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.239 0.761 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.646 4.100 -14.457 15.041 hybrid contribution -1.120 0.765 -0.781 1.565 sum -1.766 4.864 -15.238 16.093 Atomic orbital electron populations 1.21620 0.93726 1.01981 1.02005 1.22346 0.95889 0.97706 0.97543 1.22881 1.02351 0.96725 0.93079 1.22785 0.97205 0.98032 0.97863 1.20533 0.88217 0.78555 0.81894 1.90680 1.41532 1.45847 1.64061 1.45995 1.23018 1.61552 1.06831 1.21299 0.88712 0.99329 0.90650 1.22955 0.98443 1.02128 0.94152 0.87872 1.20963 1.00471 0.89508 0.86519 1.44367 1.34231 1.53968 0.99432 1.19995 0.93118 1.31430 1.05271 0.91516 1.26114 1.04820 0.96563 0.92068 1.70899 1.06337 1.44364 1.31132 0.84678 0.77692 0.77759 0.75749 1.22264 1.19412 1.21834 1.21375 0.92829 0.87058 0.97175 1.23090 1.04379 1.03221 0.90854 1.20963 0.82108 0.74409 0.96032 1.92969 1.49071 1.83481 1.92501 1.92969 1.96852 1.35811 1.93463 1.22953 1.02110 0.93216 0.97511 0.92292 0.92283 0.92389 0.90208 0.91087 0.88748 0.86995 0.76117 0.91062 0.90773 0.94813 0.91178 0.92127 0.90232 0.93898 0.90076 0.88970 0.89540 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.58 37.15 0.36 -0.57 16 2 C -0.12 -0.94 4.55 -89.72 -0.41 -1.35 16 3 C -0.11 -1.08 6.99 -25.92 -0.18 -1.26 16 4 C -0.14 -1.37 3.79 -90.96 -0.34 -1.72 16 5 C 0.52 7.02 7.35 -10.99 -0.08 6.94 16 6 O -0.54 -9.35 15.91 5.56 0.09 -9.26 16 7 N -0.72 -9.28 5.33 -60.29 -0.32 -9.60 16 8 C 0.12 1.83 4.83 -4.04 -0.02 1.81 16 9 C -0.16 -2.44 2.03 -90.50 -0.18 -2.62 16 10 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 11 C 0.15 2.76 5.40 -3.72 -0.02 2.74 16 12 N -0.60 -13.04 2.72 -172.58 -0.47 -13.51 16 13 C -0.37 -9.49 9.70 -15.06 -0.15 -9.64 16 14 H 0.07 1.81 8.06 -52.49 -0.42 1.38 16 15 C 0.01 0.26 4.82 -17.43 -0.08 0.18 16 16 N -0.89 -25.66 13.70 55.49 0.76 -24.90 16 17 Si 1.01 23.85 27.01 -169.99 -4.59 19.26 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -5.82 4.73 56.52 0.27 -5.55 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.14 2.87 4.14 -3.93 -0.02 2.86 16 22 C -0.18 -2.97 5.60 -26.84 -0.15 -3.12 16 23 C 0.30 5.03 1.63 -26.69 -0.04 4.99 16 24 F -0.20 -3.55 15.73 2.25 0.04 -3.51 16 25 F -0.21 -3.47 16.41 2.25 0.04 -3.43 16 26 C -0.12 -1.09 7.20 -25.83 -0.19 -1.28 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 7.34 -51.93 -0.38 0.01 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.09 1.06 7.45 -51.93 -0.39 0.67 16 33 H 0.11 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.40 4.51 7.69 -40.82 -0.31 4.20 16 35 H 0.07 1.10 7.64 -51.93 -0.40 0.70 16 36 H 0.07 1.18 7.97 -51.93 -0.41 0.77 16 37 H 0.03 0.64 7.92 -51.93 -0.41 0.22 16 38 H 0.07 1.21 7.13 -51.92 -0.37 0.84 16 39 H 0.27 7.64 8.73 -40.82 -0.36 7.28 16 40 H 0.08 1.71 5.83 -51.93 -0.30 1.41 16 41 H 0.04 0.88 6.38 -51.93 -0.33 0.55 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -29.95 356.32 -7.81 -37.76 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.21 Total: 3.86 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.03 Total: -48.01 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.07 Total: -6.95 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.59 Total: 19.26 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.95 -7.81 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046926644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.179 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds