Wall clock time and date at job start Tue Mar 31 2020 11:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46891 * 2 1 4 4 H 1.08997 * 115.55764 * 29.31702 * 3 2 1 5 5 C 1.52999 * 117.50039 * 243.62268 * 3 2 1 6 6 C 1.52999 * 117.49528 * 174.99846 * 3 2 1 7 7 H 1.08994 * 117.52320 * 0.02562 * 6 3 2 8 8 C 1.50707 * 117.49732 * 214.98098 * 6 3 2 9 9 O 1.21278 * 119.99790 * 359.97438 * 8 6 3 10 10 N 1.34778 * 119.99495 * 179.97438 * 8 6 3 11 11 C 1.46500 * 119.99286 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.46981 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.49910 * 55.06051 * 12 11 10 14 14 C 1.53190 * 109.49759 * 295.00143 * 12 11 10 15 15 N 1.46925 * 108.77926 * 185.41304 * 14 12 11 16 16 C 1.36934 * 120.63172 * 233.58653 * 15 14 12 17 17 H 1.07999 * 120.00238 * 27.69154 * 16 15 14 18 18 C 1.38813 * 120.00212 * 207.68502 * 16 15 14 19 19 N 1.31618 * 119.99784 * 17.37115 * 18 16 15 20 20 Si 1.86798 * 120.00239 * 197.36648 * 18 16 15 21 21 H 1.48495 * 109.47216 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46727 * 120.00490 * 20 18 16 23 23 H 1.48501 * 109.46989 * 240.00226 * 20 18 16 24 24 C 1.46925 * 118.73947 * 53.60620 * 15 14 12 25 25 C 1.53191 * 108.77463 * 306.39535 * 24 15 14 26 26 C 1.53037 * 109.50184 * 175.12945 * 12 11 10 27 27 F 1.39905 * 109.42896 * 61.27539 * 26 12 11 28 28 F 1.39900 * 109.48626 * 301.32369 * 26 12 11 29 29 H 1.08998 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47059 * 299.99927 * 1 2 3 31 31 H 1.08995 * 109.47155 * 59.99970 * 1 2 3 32 32 H 1.08992 * 109.46901 * 240.00543 * 2 1 3 33 33 H 1.08995 * 109.47155 * 120.00030 * 2 1 3 34 34 H 1.08998 * 117.49965 * 145.02070 * 5 3 2 35 35 H 1.08997 * 117.51757 * 359.97438 * 5 3 2 36 36 H 0.97000 * 120.00390 * 359.97438 * 10 8 6 37 37 H 1.09002 * 109.47548 * 60.00164 * 11 10 8 38 38 H 1.08997 * 109.47338 * 299.99511 * 11 10 8 39 39 H 1.08997 * 109.59107 * 65.62502 * 14 12 11 40 40 H 1.09002 * 109.58879 * 305.20108 * 14 12 11 41 41 H 0.97006 * 120.00403 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.59233 * 186.60986 * 24 15 14 43 43 H 1.09004 * 109.58937 * 66.17975 * 24 15 14 44 44 H 1.09006 * 109.50155 * 174.58196 * 25 24 15 45 45 H 1.09006 * 109.49812 * 294.64791 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8439 1.9077 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1807 0.7723 0.1957 8 6 4.0228 2.8621 0.8915 9 8 3.2157 3.6170 1.3911 10 7 5.3424 3.0999 1.0277 11 6 5.8019 4.2708 1.7789 12 6 7.3314 4.3065 1.7823 13 1 7.6983 4.2783 0.7563 14 6 7.8694 3.0955 2.5509 15 7 9.3301 3.2133 2.6566 16 6 10.1440 2.1918 2.2451 17 1 9.8146 1.5186 1.4676 18 6 11.3927 2.0217 2.8273 19 7 11.6655 2.5969 3.9792 20 14 12.6856 0.9763 1.9758 21 1 12.1337 0.4455 0.7035 22 1 13.8824 1.8069 1.6876 23 1 13.0687 -0.1540 2.8595 24 6 9.9010 4.4476 3.2127 25 6 9.3402 5.6434 2.4366 26 6 7.8109 5.5915 2.4611 27 9 7.3650 5.6117 3.7871 28 9 7.2959 6.6995 1.7797 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.7212 2.9429 -1.5343 35 1 3.0101 1.1862 -2.0157 36 1 5.9879 2.4959 0.6284 37 1 5.4380 4.2102 2.8046 38 1 5.4180 5.1768 1.3100 39 1 7.6144 2.1806 2.0163 40 1 7.4316 3.0722 3.5489 41 1 12.5380 2.4778 4.3863 42 1 10.9863 4.4249 3.1146 43 1 9.6288 4.5346 4.2646 44 1 9.6802 6.5697 2.8999 45 1 9.6891 5.6034 1.4047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046975576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:24 Heat of formation + Delta-G solvation = -109.821288 kcal Electronic energy + Delta-G solvation = -27294.005459 eV Core-core repulsion = 23175.812663 eV Total energy + Delta-G solvation = -4118.192796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.53827 -46.48942 -40.05606 -37.74793 -36.95848 -34.94218 -32.73818 -32.26638 -30.85964 -30.23133 -26.33465 -25.23956 -24.25107 -23.64855 -22.38880 -21.40463 -20.73258 -20.13087 -19.52413 -17.59448 -16.94543 -16.81319 -16.34041 -15.55059 -15.49271 -15.37180 -14.93324 -14.88567 -14.57231 -14.10742 -14.03244 -13.59762 -13.28230 -13.13740 -12.97535 -12.80506 -12.67018 -12.59840 -12.35062 -12.23449 -11.69930 -11.62771 -11.57911 -11.54937 -11.27664 -11.25625 -10.86663 -10.64709 -10.53149 -10.48592 -10.24363 -10.09684 -9.94958 -9.88972 -9.61975 -9.00509 -8.64176 -6.92885 -5.96324 -3.40752 2.49228 3.08053 3.27523 3.35975 3.37584 3.65663 4.18256 4.34469 4.42407 4.55976 4.59389 4.63514 4.68679 4.88625 4.92828 5.01437 5.09467 5.18017 5.21255 5.25693 5.39931 5.42967 5.50725 5.56788 5.63388 5.69449 5.75338 5.84458 5.89483 5.90446 5.99925 6.13691 6.15397 6.24820 6.30856 6.41355 6.43497 6.67382 7.08116 7.42713 7.53296 7.63025 8.23932 8.25341 9.00212 9.62809 10.18110 11.12820 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.003459 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.788154 B = 8092.452463 C = 9725.216378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.118 4.118 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.190 4.190 7 H 0.125 0.875 8 C 0.542 3.458 9 O -0.545 6.545 10 N -0.718 5.718 11 C 0.125 3.875 12 C -0.155 4.155 13 H 0.102 0.898 14 C 0.153 3.847 15 N -0.590 5.590 16 C -0.261 4.261 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.199 7.199 28 F -0.214 7.214 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.405 0.595 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.256 0.744 42 H 0.101 0.899 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 -1.199 -8.953 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.212 4.212 7 H 0.143 0.857 8 C 0.328 3.672 9 O -0.422 6.422 10 N -0.370 5.370 11 C 0.001 3.999 12 C -0.176 4.176 13 H 0.120 0.880 14 C 0.026 3.974 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C 0.044 3.956 25 C -0.218 4.218 26 C 0.263 3.737 27 F -0.180 7.180 28 F -0.195 7.195 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.240 0.760 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.119 0.881 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.379 -0.652 -8.459 16.696 hybrid contribution 1.128 -0.566 -0.435 1.335 sum -13.252 -1.218 -8.894 16.006 Atomic orbital electron populations 1.21739 0.95230 1.01592 1.02120 1.21162 0.96228 0.93661 1.02249 1.22472 0.91434 0.98691 1.01035 0.86458 1.23099 1.02103 1.03111 0.90333 1.22313 0.97769 0.99072 1.02003 0.85725 1.19639 0.82150 0.85547 0.79827 1.90688 1.53983 1.48778 1.48779 1.45879 1.07054 1.28524 1.55496 1.21320 0.92982 0.88352 0.97247 1.22966 0.94682 0.96983 1.03010 0.88018 1.20907 0.86427 0.93165 0.96893 1.44103 0.98988 1.14585 1.73538 1.19190 0.97311 1.08120 1.14417 0.91251 1.25086 0.99859 0.99106 0.95272 1.70031 1.22095 1.46955 1.15113 0.86195 0.81668 0.79648 0.79050 1.20151 1.21423 1.21585 1.20848 1.00207 0.81073 0.93510 1.23271 0.90236 1.03507 1.04835 1.21031 0.94414 0.83340 0.74867 1.92968 1.91089 1.96818 1.37146 1.92956 1.89264 1.57038 1.80203 0.92651 0.92478 0.92583 0.91639 0.91297 0.88352 0.87807 0.76033 0.90707 0.91120 0.91610 0.94957 0.93355 0.88088 0.94952 0.90533 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.87 37.16 0.37 -0.68 16 2 C -0.10 -0.74 6.22 -26.73 -0.17 -0.90 16 3 C -0.12 -1.14 5.25 -90.62 -0.48 -1.61 16 4 H 0.12 1.34 7.60 -51.93 -0.39 0.94 16 5 C -0.15 -1.31 9.88 -26.73 -0.26 -1.57 16 6 C -0.19 -1.98 5.91 -91.77 -0.54 -2.52 16 7 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 8 C 0.54 7.59 7.61 -10.98 -0.08 7.51 16 9 O -0.54 -9.65 16.26 5.56 0.09 -9.56 16 10 N -0.72 -9.54 5.33 -60.29 -0.32 -9.86 16 11 C 0.13 1.92 4.83 -4.04 -0.02 1.90 16 12 C -0.15 -2.53 2.03 -90.50 -0.18 -2.72 16 13 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 14 C 0.15 2.93 5.40 -3.71 -0.02 2.91 16 15 N -0.59 -13.59 2.99 -172.32 -0.52 -14.11 16 16 C -0.26 -6.59 9.59 -15.06 -0.14 -6.73 16 17 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 18 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 19 N -0.90 -24.69 11.19 55.49 0.62 -24.06 16 20 Si 0.90 20.37 29.59 -169.99 -5.03 15.34 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.17 3.80 5.11 -3.71 -0.02 3.78 16 25 C -0.18 -3.26 5.62 -26.61 -0.15 -3.41 16 26 C 0.30 5.33 1.63 -26.69 -0.04 5.29 16 27 F -0.20 -3.85 15.73 2.25 0.04 -3.81 16 28 F -0.21 -3.71 16.41 2.25 0.04 -3.68 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 36 H 0.40 4.59 7.70 -40.82 -0.31 4.27 16 37 H 0.07 1.26 7.97 -51.93 -0.41 0.85 16 38 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 39 H 0.07 1.16 7.13 -51.93 -0.37 0.79 16 40 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 41 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.10 2.50 6.04 -51.93 -0.31 2.19 16 43 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -29.61 367.96 -8.57 -38.19 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.21 Total: 4.70 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.83 Total: 1.31 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.22 Total: -48.03 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.61 -8.57 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046975576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.633 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds