Wall clock time and date at job start Tue Mar 31 2020 10:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00462 * 2 1 4 4 H 1.48500 * 109.46878 * 274.07066 * 3 2 1 5 5 H 1.48503 * 109.46908 * 34.06524 * 3 2 1 6 6 H 1.48495 * 109.47548 * 154.06734 * 3 2 1 7 7 C 1.38817 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 197.50664 * 7 2 1 9 9 N 1.36942 * 119.99477 * 17.49989 * 7 2 1 10 10 C 1.46927 * 120.62446 * 207.96037 * 9 7 2 11 11 C 1.53195 * 108.77339 * 233.63138 * 10 9 7 12 12 C 1.53039 * 109.31065 * 305.36812 * 11 10 9 13 13 C 1.53004 * 109.45652 * 181.38619 * 12 11 10 14 14 H 1.08999 * 109.49645 * 300.03814 * 13 12 11 15 15 C 1.53044 * 109.49697 * 179.97438 * 13 12 11 16 16 C 1.53046 * 109.53611 * 178.64696 * 15 13 12 17 17 C 1.53192 * 109.30941 * 61.37182 * 16 15 13 18 18 N 1.46927 * 108.77488 * 305.35921 * 17 16 15 19 19 C 1.34776 * 120.63447 * 233.58962 * 18 17 16 20 20 O 1.21284 * 120.00258 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99480 * 359.97438 * 19 18 17 22 22 F 1.39895 * 109.47396 * 304.99770 * 21 19 18 23 23 F 1.39904 * 109.46998 * 185.00083 * 21 19 18 24 24 C 1.46931 * 118.73856 * 53.86197 * 18 17 16 25 25 C 1.53039 * 109.52893 * 61.37574 * 12 11 10 26 26 C 1.46920 * 120.63348 * 27.98916 * 9 7 2 27 27 H 0.97000 * 119.99802 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.58238 * 113.84673 * 10 9 7 29 29 H 1.08990 * 109.59130 * 353.42285 * 10 9 7 30 30 H 1.09002 * 109.49263 * 185.41768 * 11 10 9 31 31 H 1.08990 * 109.49675 * 65.32038 * 11 10 9 32 32 H 1.08997 * 109.46532 * 301.35880 * 12 11 10 33 33 H 1.09003 * 109.45658 * 58.63366 * 15 13 12 34 34 H 1.08997 * 109.45290 * 298.66401 * 15 13 12 35 35 H 1.08994 * 109.50445 * 301.41571 * 16 15 13 36 36 H 1.09004 * 109.49652 * 181.31524 * 16 15 13 37 37 H 1.08998 * 109.58800 * 185.57318 * 17 16 15 38 38 H 1.09005 * 109.70703 * 65.21595 * 17 16 15 39 39 H 1.09002 * 109.47054 * 65.00543 * 21 19 18 40 40 H 1.08999 * 109.58373 * 65.92508 * 24 18 17 41 41 H 1.08994 * 109.58644 * 186.35044 * 24 18 17 42 42 H 1.09003 * 109.49737 * 58.57315 * 25 12 11 43 43 H 1.08999 * 109.49848 * 178.67628 * 25 12 11 44 44 H 1.09006 * 109.58284 * 246.15531 * 26 9 7 45 45 H 1.08997 * 109.58624 * 6.57646 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4117 2.0960 -1.3966 5 1 1.4934 2.6263 0.7843 6 1 3.5881 1.4168 0.6122 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2239 0.2808 9 7 1.3730 -2.3605 -0.3577 10 6 1.8150 -3.6544 0.1801 11 6 2.0769 -4.6102 -0.9881 12 6 0.8270 -4.6889 -1.8677 13 6 1.0730 -5.6694 -3.0163 14 1 1.9172 -5.3253 -3.6138 15 6 -0.1767 -5.7493 -3.8961 16 6 0.0801 -6.7040 -5.0644 17 6 0.3772 -8.1041 -4.5184 18 7 1.4865 -8.0121 -3.5593 19 6 2.5795 -8.7887 -3.6968 20 8 3.4882 -8.7036 -2.8982 21 6 2.6717 -9.7635 -4.8424 22 9 1.5547 -10.6056 -4.8293 23 9 3.8348 -10.5297 -4.7102 24 6 1.3791 -7.0617 -2.4439 25 6 0.5147 -3.3036 -2.4380 26 6 0.2347 -2.3330 -1.2863 27 1 -0.4850 0.8401 -0.0004 28 1 1.0378 -4.0675 0.8231 29 1 2.7320 -3.5179 0.7532 30 1 2.3125 -5.6016 -0.6011 31 1 2.9150 -4.2413 -1.5792 32 1 -0.0166 -5.0342 -1.2699 33 1 -0.4126 -4.7577 -4.2826 34 1 -1.0146 -6.1171 -3.3039 35 1 0.9336 -6.3503 -5.6426 36 1 -0.8021 -6.7425 -5.7034 37 1 0.6576 -8.7645 -5.3390 38 1 -0.5069 -8.4987 -4.0176 39 1 2.7028 -9.2155 -5.7842 40 1 0.5742 -7.3707 -1.7770 41 1 2.3206 -7.0341 -1.8955 42 1 1.3678 -2.9470 -3.0152 43 1 -0.3618 -3.3648 -3.0830 44 1 -0.6713 -2.6384 -0.7628 45 1 0.1091 -1.3247 -1.6806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047218327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:49 Heat of formation + Delta-G solvation = -124.643774 kcal Electronic energy + Delta-G solvation = -27720.925126 eV Core-core repulsion = 23602.089579 eV Total energy + Delta-G solvation = -4118.835547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.57470 -47.58494 -40.51931 -38.54824 -36.94618 -34.28065 -32.66037 -31.48933 -30.21027 -29.37619 -28.30749 -25.53835 -25.11740 -23.37296 -22.22450 -21.47228 -20.56176 -19.80150 -19.10156 -18.59282 -18.08341 -17.55125 -16.75870 -16.27641 -15.37589 -15.05967 -14.88138 -14.71019 -14.38476 -14.19371 -14.04538 -13.87592 -13.68899 -13.48411 -13.40867 -13.22254 -13.06094 -12.83955 -12.50935 -12.31524 -12.11344 -11.63218 -11.44557 -11.28351 -11.00549 -10.90439 -10.72165 -10.62514 -10.36588 -10.25719 -10.12824 -10.07492 -9.86968 -9.43822 -9.35323 -8.95918 -8.44949 -6.64219 -5.77252 -3.18897 1.83701 2.19867 3.30162 3.38279 3.45515 3.47031 3.54336 4.13231 4.21943 4.40512 4.51299 4.61089 4.68482 4.81588 5.02192 5.08211 5.28110 5.35392 5.41646 5.48008 5.51375 5.59220 5.69143 5.75664 5.83294 5.90129 5.96168 6.04337 6.12093 6.24165 6.32982 6.37936 6.55830 6.65551 6.72306 6.82333 6.83647 6.89256 7.03810 7.39682 7.47913 7.67093 7.81800 8.47411 9.23955 9.87693 10.44595 11.31160 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.002861 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.940251 B = 9785.754740 C =10300.913274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.130 4.130 12 C -0.070 4.070 13 C -0.095 4.095 14 H 0.073 0.927 15 C -0.119 4.119 16 C -0.136 4.136 17 C 0.098 3.902 18 N -0.593 5.593 19 C 0.471 3.529 20 O -0.503 6.503 21 C 0.257 3.743 22 F -0.188 7.188 23 F -0.176 7.176 24 C 0.113 3.887 25 C -0.134 4.134 26 C 0.171 3.829 27 H 0.253 0.747 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.016 0.984 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 -18.227 -13.433 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.170 4.170 12 C -0.089 4.089 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.157 4.157 16 C -0.174 4.174 17 C -0.024 4.024 18 N -0.327 5.327 19 C 0.253 3.747 20 O -0.377 6.377 21 C 0.200 3.800 22 F -0.169 7.169 23 F -0.157 7.157 24 C -0.008 4.008 25 C -0.173 4.173 26 C 0.045 3.955 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.034 0.966 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.072 -18.070 -12.957 22.261 hybrid contribution 0.308 0.724 -0.098 0.792 sum -0.764 -17.347 -13.055 21.724 Atomic orbital electron populations 1.70041 1.05239 1.25372 1.54155 1.25026 0.95269 0.98363 1.01068 0.86290 0.79216 0.83815 0.77568 1.21538 1.21815 1.20399 1.19225 0.92753 0.84998 1.41044 0.91741 1.44063 1.36391 1.01401 1.49697 1.20892 0.97444 0.86937 0.92834 1.22118 0.97192 0.98907 0.98750 1.21022 0.98365 0.94862 0.94623 1.21696 0.98231 0.93794 0.97657 0.90889 1.21671 0.97908 1.00003 0.96076 1.21963 1.02403 0.94363 0.98650 1.22016 0.89898 0.98422 0.92082 1.48177 1.17165 1.38571 1.28770 1.20999 0.83572 0.83007 0.87084 1.90828 1.37334 1.67418 1.42096 1.21626 0.72526 0.84917 1.00908 1.93035 1.52281 1.73832 1.97761 1.93064 1.48373 1.77042 1.97216 1.22069 1.03920 0.87436 0.87384 1.22263 0.99965 0.95228 0.99860 1.20755 0.88633 0.98191 0.87874 0.93730 0.96630 0.92975 0.93138 0.92396 0.91757 0.90491 0.91603 0.91389 0.90298 0.89910 0.90194 0.84784 0.90774 0.88261 0.92857 0.93163 0.96622 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.22 55.49 0.62 -25.55 16 2 C 0.00 0.03 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.91 9.58 -15.05 -0.14 -7.06 16 8 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.79 2.99 -172.32 -0.52 -15.31 16 10 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 11 C -0.13 -2.22 5.06 -26.61 -0.13 -2.35 16 12 C -0.07 -1.06 1.74 -90.58 -0.16 -1.22 16 13 C -0.09 -1.13 1.93 -90.27 -0.17 -1.30 16 14 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.12 -1.15 4.85 -26.68 -0.13 -1.28 16 16 C -0.14 -0.96 6.08 -26.61 -0.16 -1.12 16 17 C 0.10 0.68 5.90 -3.71 -0.02 0.66 16 18 N -0.59 -6.00 2.97 -172.50 -0.51 -6.51 16 19 C 0.47 5.44 7.55 -10.98 -0.08 5.36 16 20 O -0.50 -7.95 16.03 5.55 0.09 -7.86 16 21 C 0.26 2.16 4.62 36.01 0.17 2.33 16 22 F -0.19 -1.58 15.53 2.25 0.03 -1.55 16 23 F -0.18 -1.94 16.95 2.25 0.04 -1.90 16 24 C 0.11 1.31 5.22 -3.48 -0.02 1.29 16 25 C -0.13 -2.38 5.05 -26.61 -0.13 -2.52 16 26 C 0.17 3.98 5.31 -3.72 -0.02 3.96 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 30 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.80 6.33 -51.93 -0.33 0.47 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.42 5.34 -51.93 -0.28 0.14 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.14 0.56 7.91 -51.93 -0.41 0.15 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.35 5.60 -51.93 -0.29 1.06 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.78 6.33 -51.93 -0.33 0.46 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 2.24 6.06 -51.93 -0.31 1.92 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -32.05 348.67 -8.04 -40.09 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.90 Total: -3.12 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.12 Total: -0.27 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.40 Total: -47.37 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.09 Total: -7.86 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.07 Total: -3.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.05 -8.04 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047218327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.554 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds