Wall clock time and date at job start Tue Mar 31 2020 10:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00462 * 2 1 4 4 H 1.48500 * 109.46878 * 274.07066 * 3 2 1 5 5 H 1.48503 * 109.46908 * 34.06524 * 3 2 1 6 6 H 1.48495 * 109.47548 * 154.06734 * 3 2 1 7 7 C 1.38817 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 197.50664 * 7 2 1 9 9 N 1.36942 * 119.99477 * 17.49989 * 7 2 1 10 10 C 1.46927 * 120.62446 * 207.96037 * 9 7 2 11 11 C 1.53195 * 108.77339 * 233.63138 * 10 9 7 12 12 C 1.53039 * 109.31065 * 305.36812 * 11 10 9 13 13 C 1.53004 * 109.45652 * 181.38619 * 12 11 10 14 14 H 1.08999 * 109.49645 * 300.03814 * 13 12 11 15 15 C 1.53044 * 109.49697 * 179.97438 * 13 12 11 16 16 C 1.53046 * 109.53611 * 178.64696 * 15 13 12 17 17 C 1.53192 * 109.30941 * 61.37182 * 16 15 13 18 18 N 1.46927 * 108.77488 * 305.35921 * 17 16 15 19 19 C 1.34776 * 120.63447 * 233.58962 * 18 17 16 20 20 O 1.21284 * 120.00258 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99480 * 359.97438 * 19 18 17 22 22 F 1.39895 * 109.47396 * 304.99770 * 21 19 18 23 23 F 1.39904 * 109.46998 * 185.00083 * 21 19 18 24 24 C 1.46931 * 118.73856 * 53.86197 * 18 17 16 25 25 C 1.53039 * 109.52893 * 61.37574 * 12 11 10 26 26 C 1.46920 * 120.63348 * 27.98916 * 9 7 2 27 27 H 0.97000 * 119.99802 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.58238 * 113.84673 * 10 9 7 29 29 H 1.08990 * 109.59130 * 353.42285 * 10 9 7 30 30 H 1.09002 * 109.49263 * 185.41768 * 11 10 9 31 31 H 1.08990 * 109.49675 * 65.32038 * 11 10 9 32 32 H 1.08997 * 109.46532 * 301.35880 * 12 11 10 33 33 H 1.09003 * 109.45658 * 58.63366 * 15 13 12 34 34 H 1.08997 * 109.45290 * 298.66401 * 15 13 12 35 35 H 1.08994 * 109.50445 * 301.41571 * 16 15 13 36 36 H 1.09004 * 109.49652 * 181.31524 * 16 15 13 37 37 H 1.08998 * 109.58800 * 185.57318 * 17 16 15 38 38 H 1.09005 * 109.70703 * 65.21595 * 17 16 15 39 39 H 1.09002 * 109.47054 * 65.00543 * 21 19 18 40 40 H 1.08999 * 109.58373 * 65.92508 * 24 18 17 41 41 H 1.08994 * 109.58644 * 186.35044 * 24 18 17 42 42 H 1.09003 * 109.49737 * 58.57315 * 25 12 11 43 43 H 1.08999 * 109.49848 * 178.67628 * 25 12 11 44 44 H 1.09006 * 109.58284 * 246.15531 * 26 9 7 45 45 H 1.08997 * 109.58624 * 6.57646 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4117 2.0960 -1.3966 5 1 1.4934 2.6263 0.7843 6 1 3.5881 1.4168 0.6122 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2239 0.2808 9 7 1.3730 -2.3605 -0.3577 10 6 1.8150 -3.6544 0.1801 11 6 2.0769 -4.6102 -0.9881 12 6 0.8270 -4.6889 -1.8677 13 6 1.0730 -5.6694 -3.0163 14 1 1.9172 -5.3253 -3.6138 15 6 -0.1767 -5.7493 -3.8961 16 6 0.0801 -6.7040 -5.0644 17 6 0.3772 -8.1041 -4.5184 18 7 1.4865 -8.0121 -3.5593 19 6 2.5795 -8.7887 -3.6968 20 8 3.4882 -8.7036 -2.8982 21 6 2.6717 -9.7635 -4.8424 22 9 1.5547 -10.6056 -4.8293 23 9 3.8348 -10.5297 -4.7102 24 6 1.3791 -7.0617 -2.4439 25 6 0.5147 -3.3036 -2.4380 26 6 0.2347 -2.3330 -1.2863 27 1 -0.4850 0.8401 -0.0004 28 1 1.0378 -4.0675 0.8231 29 1 2.7320 -3.5179 0.7532 30 1 2.3125 -5.6016 -0.6011 31 1 2.9150 -4.2413 -1.5792 32 1 -0.0166 -5.0342 -1.2699 33 1 -0.4126 -4.7577 -4.2826 34 1 -1.0146 -6.1171 -3.3039 35 1 0.9336 -6.3503 -5.6426 36 1 -0.8021 -6.7425 -5.7034 37 1 0.6576 -8.7645 -5.3390 38 1 -0.5069 -8.4987 -4.0176 39 1 2.7028 -9.2155 -5.7842 40 1 0.5742 -7.3707 -1.7770 41 1 2.3206 -7.0341 -1.8955 42 1 1.3678 -2.9470 -3.0152 43 1 -0.3618 -3.3648 -3.0830 44 1 -0.6713 -2.6384 -0.7628 45 1 0.1091 -1.3247 -1.6806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047218327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:48 Heat of formation + Delta-G solvation = -143.627354 kcal Electronic energy + Delta-G solvation = -27721.748316 eV Core-core repulsion = 23602.089579 eV Total energy + Delta-G solvation = -4119.658737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.25214 -48.28122 -41.40495 -39.78474 -38.18644 -35.73146 -33.89143 -32.81691 -31.74612 -30.81549 -29.23312 -26.98993 -26.17506 -24.66285 -23.65690 -22.71190 -21.66119 -20.73230 -20.56470 -19.31467 -18.77243 -18.65606 -18.29787 -17.17852 -16.83493 -16.23265 -15.93927 -15.66724 -15.52363 -15.31574 -15.16362 -15.05693 -14.83514 -14.62731 -14.47868 -14.36678 -14.12531 -13.98405 -13.78098 -13.57963 -13.14572 -13.02945 -12.90874 -12.65535 -12.60108 -12.17759 -12.00851 -11.94425 -11.87766 -11.75055 -11.57418 -11.42357 -11.14830 -10.89072 -10.78736 -10.54135 -9.82737 -8.67392 -7.88171 -5.33158 0.99915 1.43190 1.45024 1.46035 1.55562 2.50170 2.65982 2.93910 3.25256 3.48672 3.62671 3.70350 3.71572 3.77249 3.87282 4.05748 4.16364 4.18189 4.33798 4.41706 4.54797 4.58127 4.63319 4.70982 4.77415 4.81257 4.85981 4.90969 5.02222 5.02919 5.11119 5.15884 5.28378 5.31300 5.38892 5.42688 5.45436 5.51301 5.57050 5.67105 5.81266 6.04613 6.38970 6.65888 7.15248 7.87267 8.38264 9.17611 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.002861 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.940251 B = 9785.754740 C =10300.913274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.061 0.939 9 N -0.612 5.612 10 C 0.140 3.860 11 C -0.118 4.118 12 C -0.062 4.062 13 C -0.081 4.081 14 H 0.063 0.937 15 C -0.120 4.120 16 C -0.128 4.128 17 C 0.093 3.907 18 N -0.588 5.588 19 C 0.462 3.538 20 O -0.557 6.557 21 C 0.264 3.736 22 F -0.185 7.185 23 F -0.193 7.193 24 C 0.115 3.885 25 C -0.118 4.118 26 C 0.176 3.824 27 H 0.250 0.750 28 H 0.014 0.986 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.188 0.812 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.077 0.923 44 H -0.004 1.004 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -19.769 -15.761 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.396 4.396 8 H 0.079 0.921 9 N -0.336 5.336 10 C 0.015 3.985 11 C -0.157 4.157 12 C -0.081 4.081 13 C -0.100 4.100 14 H 0.081 0.919 15 C -0.157 4.157 16 C -0.166 4.166 17 C -0.028 4.028 18 N -0.320 5.320 19 C 0.247 3.753 20 O -0.436 6.436 21 C 0.207 3.793 22 F -0.167 7.167 23 F -0.174 7.174 24 C -0.007 4.007 25 C -0.157 4.157 26 C 0.050 3.950 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.205 0.795 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.014 0.986 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.632 -19.643 -15.313 24.960 hybrid contribution 0.431 1.191 0.697 1.446 sum -1.201 -18.451 -14.616 23.570 Atomic orbital electron populations 1.70186 1.06558 1.25815 1.55345 1.25763 0.96069 1.01367 1.01279 0.85280 0.78166 0.79695 0.77485 1.21118 1.21968 1.19557 1.19513 0.92888 0.86413 1.40749 0.92147 1.44347 1.36626 1.02048 1.50568 1.21044 0.96832 0.86270 0.94393 1.21965 0.97775 0.98657 0.97333 1.20920 0.97352 0.94308 0.95566 1.21487 0.99314 0.92830 0.96362 0.91869 1.21674 0.96551 1.00717 0.96756 1.21937 1.03685 0.93347 0.97665 1.22328 0.89161 0.99080 0.92236 1.48273 1.17605 1.37472 1.28639 1.21668 0.82974 0.83364 0.87340 1.90804 1.39282 1.69221 1.44264 1.21898 0.71803 0.84227 1.01339 1.93042 1.52076 1.73803 1.97746 1.93031 1.49578 1.77527 1.97309 1.21883 1.02970 0.87754 0.88101 1.22045 1.00694 0.95159 0.97804 1.20613 0.87570 0.97723 0.89046 0.94068 0.96842 0.93676 0.90935 0.93505 0.91519 0.91077 0.90931 0.91249 0.87678 0.87242 0.89042 0.79513 0.89872 0.90648 0.93815 0.90509 0.98642 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 11.22 21.65 0.24 -55.41 16 2 C -0.05 -2.80 4.90 84.86 0.42 -2.38 16 3 Si 0.97 45.55 29.59 68.60 2.03 47.57 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.27 -15.04 9.58 84.03 0.81 -14.23 16 8 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 9 N -0.61 -31.45 2.99 -699.10 -2.09 -33.54 16 10 C 0.14 6.00 6.52 86.36 0.56 6.56 16 11 C -0.12 -4.01 5.06 30.67 0.16 -3.85 16 12 C -0.06 -1.84 1.74 -10.77 -0.02 -1.86 16 13 C -0.08 -1.77 1.93 -10.57 -0.02 -1.79 16 14 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 15 C -0.12 -1.93 4.85 30.62 0.15 -1.78 16 16 C -0.13 -1.25 6.08 30.67 0.19 -1.07 16 17 C 0.09 0.89 5.90 86.36 0.51 1.40 16 18 N -0.59 -10.36 2.97 -818.05 -2.43 -12.78 16 19 C 0.46 9.85 7.55 87.66 0.66 10.51 16 20 O -0.56 -17.59 16.03 -3.04 -0.05 -17.64 16 21 C 0.26 3.61 4.62 71.24 0.33 3.94 16 22 F -0.19 -2.47 15.53 44.97 0.70 -1.77 16 23 F -0.19 -3.93 16.95 44.97 0.76 -3.17 16 24 C 0.11 2.48 5.22 86.51 0.45 2.93 16 25 C -0.12 -4.16 5.05 30.67 0.15 -4.00 16 26 C 0.18 8.42 5.31 86.36 0.46 8.88 16 27 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.04 1.94 7.93 -2.39 -0.02 1.92 16 30 H 0.07 2.15 6.50 -2.39 -0.02 2.13 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.26 6.33 -2.39 -0.02 1.24 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.11 0.52 5.34 -2.39 -0.01 0.50 16 38 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.19 0.63 7.91 -2.39 -0.02 0.62 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 2.02 5.60 -2.39 -0.01 2.01 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 2.29 6.33 -2.39 -0.02 2.28 16 44 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 45 H 0.05 2.71 6.06 -2.39 -0.01 2.69 16 Total: -1.00 -73.40 348.67 4.96 -68.44 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 0.99 Total: 5.04 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.80 Total: 3.26 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -4.28 Total: -101.73 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.05 Total: -17.64 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 1.46 Total: -4.94 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.40 4.96 -68.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047218327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.183 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds