Wall clock time and date at job start Tue Mar 31 2020 10:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99862 * 2 1 4 4 H 1.48499 * 109.47475 * 272.90768 * 3 2 1 5 5 H 1.48506 * 109.47422 * 32.91077 * 3 2 1 6 6 H 1.48502 * 109.47032 * 152.91110 * 3 2 1 7 7 C 1.38812 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00162 * 339.36203 * 7 2 1 9 9 N 1.36937 * 119.99871 * 159.36571 * 7 2 1 10 10 C 1.46930 * 120.62957 * 332.62193 * 9 7 2 11 11 C 1.53190 * 108.77785 * 233.58945 * 10 9 7 12 12 C 1.53039 * 109.30995 * 305.36614 * 11 10 9 13 13 C 1.52997 * 109.46169 * 181.38219 * 12 11 10 14 14 H 1.09006 * 109.50293 * 299.91260 * 13 12 11 15 15 C 1.53049 * 109.49522 * 59.97148 * 13 12 11 16 16 C 1.53041 * 109.53989 * 181.31837 * 15 13 12 17 17 C 1.53198 * 109.31152 * 298.63663 * 16 15 13 18 18 N 1.46924 * 108.77614 * 54.63483 * 17 16 15 19 19 C 1.34776 * 120.63129 * 126.41247 * 18 17 16 20 20 O 1.21282 * 119.99926 * 180.02562 * 19 18 17 21 21 C 1.50697 * 119.99917 * 359.97438 * 19 18 17 22 22 F 1.39902 * 109.47091 * 184.99932 * 21 19 18 23 23 F 1.39901 * 109.47372 * 305.00175 * 21 19 18 24 24 C 1.46927 * 118.73885 * 306.39252 * 18 17 16 25 25 C 1.53039 * 109.52885 * 61.37320 * 12 11 10 26 26 C 1.46919 * 120.63138 * 152.60218 * 9 7 2 27 27 H 0.97002 * 120.00018 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58369 * 113.80289 * 10 9 7 29 29 H 1.09002 * 109.58311 * 353.37896 * 10 9 7 30 30 H 1.08992 * 109.49927 * 185.41345 * 11 10 9 31 31 H 1.09001 * 109.52097 * 65.33106 * 11 10 9 32 32 H 1.08994 * 109.46551 * 301.35586 * 12 11 10 33 33 H 1.08999 * 109.45671 * 301.34103 * 15 13 12 34 34 H 1.09001 * 109.46025 * 61.31149 * 15 13 12 35 35 H 1.08996 * 109.49611 * 58.58676 * 16 15 13 36 36 H 1.09000 * 109.49939 * 178.68525 * 16 15 13 37 37 H 1.08996 * 109.58463 * 174.42336 * 17 16 15 38 38 H 1.08997 * 109.58457 * 294.70696 * 17 16 15 39 39 H 1.08999 * 109.46780 * 65.00482 * 21 19 18 40 40 H 1.09001 * 109.58554 * 293.81926 * 24 18 17 41 41 H 1.08996 * 109.58979 * 173.39588 * 24 18 17 42 42 H 1.09001 * 109.50204 * 58.57490 * 25 12 11 43 43 H 1.09000 * 109.50242 * 178.67833 * 25 12 11 44 44 H 1.08999 * 109.58755 * 246.19852 * 26 9 7 45 45 H 1.08999 * 109.58835 * 6.62569 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0820 -1.3982 5 1 1.4798 2.6342 0.7607 6 1 3.5772 1.4232 0.6376 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3287 9 7 3.3137 -1.2401 -0.4185 10 6 3.8177 -0.2582 -1.3884 11 6 4.4629 -1.0073 -2.5585 12 6 5.5295 -1.9639 -2.0205 13 6 6.2001 -2.6889 -3.1891 14 1 5.4520 -3.2558 -3.7432 15 6 6.8553 -1.6639 -4.1177 16 6 7.4982 -2.3856 -5.3043 17 6 8.5841 -3.3365 -4.7910 18 7 7.9925 -4.2326 -3.7882 19 6 8.1094 -5.5699 -3.9081 20 8 7.6161 -6.2990 -3.0739 21 6 8.8521 -6.1593 -5.0795 22 9 8.7420 -7.5536 -5.0478 23 9 8.3027 -5.6751 -6.2715 24 6 7.2713 -3.6432 -2.6519 25 6 4.8753 -2.9897 -1.0922 26 6 4.2350 -2.2630 0.0948 27 1 -0.4850 0.8401 0.0004 28 1 4.5600 0.3805 -0.9097 29 1 2.9911 0.3503 -1.7553 30 1 4.9255 -0.2916 -3.2380 31 1 3.7007 -1.5752 -3.0921 32 1 6.2784 -1.3982 -1.4663 33 1 6.0991 -0.9685 -4.4820 34 1 7.6203 -1.1140 -3.5696 35 1 6.7382 -2.9557 -5.8385 36 1 7.9444 -1.6533 -5.9772 37 1 8.9766 -3.9247 -5.6204 38 1 9.3906 -2.7598 -4.3381 39 1 9.9032 -5.8765 -5.0226 40 1 7.9696 -3.0916 -2.0223 41 1 6.7976 -4.4337 -2.0699 42 1 4.1088 -3.5388 -1.6392 43 1 5.6314 -3.6851 -0.7278 44 1 5.0113 -1.7878 0.6945 45 1 3.6838 -2.9773 0.7064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047218328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:53 Heat of formation + Delta-G solvation = -117.372004 kcal Electronic energy + Delta-G solvation = -27891.838815 eV Core-core repulsion = 23773.318595 eV Total energy + Delta-G solvation = -4118.520220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.62078 -47.63140 -40.58618 -38.71916 -37.15008 -34.41709 -32.69349 -31.65745 -30.47596 -29.89701 -28.43954 -25.65114 -25.13311 -23.44065 -22.36232 -21.85190 -20.69001 -19.81428 -19.35011 -18.72233 -18.04577 -17.61737 -16.80838 -16.33069 -15.52572 -15.24632 -15.18599 -14.83963 -14.40498 -14.28852 -14.11924 -13.92947 -13.87158 -13.68313 -13.49050 -13.22900 -13.18869 -12.94911 -12.64620 -12.47804 -12.28425 -11.82714 -11.67853 -11.54436 -11.21164 -11.05195 -10.78450 -10.76107 -10.45883 -10.34344 -10.21755 -10.08035 -9.73901 -9.57443 -9.40249 -9.04581 -8.58654 -6.93810 -5.92701 -3.27713 1.76698 2.16934 3.25889 3.31870 3.48531 3.49246 3.51719 4.09428 4.19216 4.36096 4.54557 4.57418 4.61576 4.72466 4.93556 4.99815 5.01181 5.20117 5.32108 5.34688 5.43469 5.49455 5.51633 5.60157 5.77107 5.81157 5.82755 5.87814 6.02243 6.04630 6.12037 6.22180 6.27061 6.41614 6.48056 6.58419 6.67809 6.71007 6.75177 6.77000 7.02634 7.42813 7.99887 8.35715 8.97768 9.75062 10.13623 11.23582 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026995 B = 0.003102 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.994221 B = 9023.513481 C = 9553.731899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.258 4.258 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.126 3.874 11 C -0.128 4.128 12 C -0.070 4.070 13 C -0.096 4.096 14 H 0.075 0.925 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.092 3.908 18 N -0.594 5.594 19 C 0.471 3.529 20 O -0.501 6.501 21 C 0.258 3.742 22 F -0.175 7.175 23 F -0.185 7.185 24 C 0.114 3.886 25 C -0.133 4.133 26 C 0.149 3.851 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.020 0.980 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.904 -6.288 -12.793 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.715 3.285 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.167 4.167 12 C -0.089 4.089 13 C -0.115 4.115 14 H 0.094 0.906 15 C -0.157 4.157 16 C -0.171 4.171 17 C -0.031 4.031 18 N -0.327 5.327 19 C 0.253 3.747 20 O -0.375 6.375 21 C 0.201 3.799 22 F -0.156 7.156 23 F -0.167 7.167 24 C -0.008 4.008 25 C -0.172 4.172 26 C 0.023 3.977 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.450 -6.628 -12.326 26.455 hybrid contribution 0.377 1.007 -0.222 1.099 sum 22.828 -5.621 -12.549 26.649 Atomic orbital electron populations 1.69846 1.05738 1.26476 1.53272 1.25285 0.95223 0.97561 0.99652 0.86929 0.79995 0.84704 0.76904 1.21707 1.23256 1.19639 1.18947 0.85070 0.94725 1.39868 0.89775 1.44359 1.08606 1.33388 1.46668 1.21322 0.97095 0.92024 0.89521 1.22095 0.97603 0.98252 0.98746 1.21016 0.96892 0.96443 0.94590 1.21604 0.96605 0.96017 0.97269 0.90634 1.21680 1.00272 0.97949 0.95800 1.21895 0.98272 0.98459 0.98481 1.22088 0.96493 0.93170 0.91308 1.48150 1.53882 1.04505 1.26182 1.21015 0.82271 0.83450 0.87924 1.90832 1.45791 1.58940 1.41961 1.21628 0.99973 0.76956 0.81381 1.93068 1.97422 1.28870 1.96276 1.93020 1.88133 1.87171 1.48336 1.21947 0.94125 0.97650 0.87029 1.22127 0.99384 0.97367 0.98296 1.20914 0.92326 0.91276 0.93205 0.92830 0.95963 0.91102 0.92689 0.91777 0.91618 0.90571 0.91676 0.91119 0.90363 0.89308 0.90507 0.84799 0.90799 0.88209 0.91877 0.92673 0.96159 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.97 55.49 0.78 -27.42 16 2 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 3 Si 0.88 22.48 24.34 -169.99 -4.14 18.34 16 4 H -0.29 -7.05 6.62 56.52 0.37 -6.68 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.27 -6.77 6.63 56.52 0.38 -6.39 16 7 C -0.26 -7.28 10.04 -15.06 -0.15 -7.44 16 8 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 9 N -0.61 -14.41 2.77 -172.32 -0.48 -14.89 16 10 C 0.13 2.70 4.20 -3.71 -0.02 2.68 16 11 C -0.13 -2.13 5.05 -26.61 -0.13 -2.27 16 12 C -0.07 -0.99 1.74 -90.58 -0.16 -1.15 16 13 C -0.10 -1.09 1.92 -90.50 -0.17 -1.27 16 14 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.12 -1.09 4.85 -26.69 -0.13 -1.22 16 16 C -0.13 -0.96 6.08 -26.61 -0.16 -1.12 16 17 C 0.09 0.58 6.12 -3.71 -0.02 0.56 16 18 N -0.59 -5.61 2.97 -172.77 -0.51 -6.12 16 19 C 0.47 5.18 7.55 -10.99 -0.08 5.10 16 20 O -0.50 -7.68 16.03 5.56 0.09 -7.59 16 21 C 0.26 2.04 4.67 36.00 0.17 2.21 16 22 F -0.18 -1.87 16.95 2.25 0.04 -1.83 16 23 F -0.19 -1.55 15.25 2.25 0.03 -1.52 16 24 C 0.11 1.22 5.19 -3.71 -0.02 1.20 16 25 C -0.13 -2.12 5.05 -26.61 -0.13 -2.26 16 26 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.02 0.47 7.07 -51.93 -0.37 0.11 16 29 H 0.07 1.69 4.49 -51.93 -0.23 1.45 16 30 H 0.05 0.79 6.33 -51.93 -0.33 0.46 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.75 6.33 -51.93 -0.33 0.42 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.43 5.03 -51.93 -0.26 0.17 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.13 0.43 8.11 -51.93 -0.42 0.01 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 1.28 5.59 -51.93 -0.29 0.99 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.77 6.50 -51.93 -0.34 0.43 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -33.68 342.03 -6.99 -40.67 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.82 Total: -3.25 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.13 Total: -1.55 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.22 Total: -48.43 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.07 Total: -3.35 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.68 -6.99 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047218328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.705 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds