Wall clock time and date at job start Tue Mar 31 2020 11:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.50704 * 109.46619 * 119.99512 * 2 1 3 5 5 O 1.21283 * 119.99658 * 128.82245 * 4 2 1 6 6 N 1.34777 * 120.00117 * 308.82661 * 4 2 1 7 7 C 1.45731 * 117.75909 * 356.04756 * 6 4 2 8 8 C 1.53056 * 109.54120 * 218.89732 * 7 6 4 9 9 C 1.52941 * 108.49509 * 306.17020 * 8 7 6 10 10 C 1.52930 * 109.79149 * 65.99956 * 9 8 7 11 11 H 1.08999 * 111.26757 * 66.65730 * 10 9 8 12 12 C 1.44195 * 117.75803 * 176.03108 * 6 4 2 13 13 H 1.09000 * 109.22239 * 27.38483 * 12 6 4 14 14 C 1.54067 * 111.76342 * 266.48686 * 12 6 4 15 15 C 1.54048 * 103.74346 * 206.75029 * 14 12 6 16 16 N 1.46883 * 107.71034 * 17.12801 * 15 14 12 17 17 C 1.36939 * 125.58075 * 182.96489 * 16 15 14 18 18 H 1.08000 * 119.99708 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00098 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00148 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99916 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47391 * 60.00020 * 21 19 17 23 23 H 1.48504 * 109.46998 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47178 * 299.99960 * 21 19 17 25 25 C 1.52996 * 109.46909 * 239.99196 * 2 1 3 26 26 F 1.39897 * 109.47653 * 300.00448 * 25 2 1 27 27 F 1.39904 * 109.47100 * 60.00956 * 25 2 1 28 28 H 1.08998 * 109.46893 * 300.00483 * 1 2 3 29 29 H 1.09000 * 109.46811 * 60.00389 * 1 2 3 30 30 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46962 * 203.64279 * 3 2 1 32 32 H 1.08998 * 109.47044 * 323.63973 * 3 2 1 33 33 H 1.09003 * 109.47542 * 83.64397 * 3 2 1 34 34 H 1.08993 * 109.45941 * 338.91614 * 7 6 4 35 35 H 1.09001 * 109.45403 * 98.88194 * 7 6 4 36 36 H 1.09000 * 109.63033 * 65.88812 * 8 7 6 37 37 H 1.09000 * 109.62826 * 186.48458 * 8 7 6 38 38 H 1.09000 * 109.41209 * 305.91306 * 9 8 7 39 39 H 1.08994 * 109.37962 * 186.07052 * 9 8 7 40 40 H 1.09001 * 110.56988 * 325.31652 * 14 12 6 41 41 H 1.09000 * 110.56621 * 88.03798 * 14 12 6 42 42 H 1.09004 * 109.81136 * 136.67756 * 15 14 12 43 43 H 1.09003 * 109.81382 * 257.50751 * 15 14 12 44 44 H 0.96997 * 119.99977 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.46737 * 180.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.8552 -1.5952 1.1266 6 7 1.5669 -0.3624 2.4467 7 6 0.6463 0.7646 2.5241 8 6 0.9583 1.5957 3.7710 9 6 0.9460 0.6688 4.9874 10 6 2.0976 -0.3325 4.8871 11 1 3.0634 0.1661 4.9689 12 6 2.0138 -1.1310 3.5819 13 1 2.9967 -1.5503 3.3669 14 6 1.0381 -2.2753 3.9168 15 6 1.2500 -2.5074 5.4249 16 7 1.9336 -1.3259 5.9671 17 6 2.3508 -1.1711 7.2621 18 1 2.8464 -0.2604 7.5646 19 6 2.1367 -2.1846 8.1862 20 7 1.5323 -3.2942 7.8177 21 14 2.7051 -1.9730 9.9530 22 1 2.0310 -0.7932 10.5520 23 1 2.3598 -3.1886 10.7329 24 1 4.1757 -1.7689 9.9788 25 6 2.0400 -0.7214 -1.2491 26 9 1.5736 -2.0404 -1.2491 27 9 1.5738 -0.0619 -2.3915 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.0488 1.4711 -0.4121 32 1 1.3810 2.0609 -0.6093 33 1 2.0540 1.8230 1.0213 34 1 0.7580 1.3865 1.6360 35 1 -0.3772 0.3941 2.5815 36 1 1.9421 2.0537 3.6690 37 1 0.2013 2.3704 3.8934 38 1 -0.0007 0.1298 5.0227 39 1 1.0595 1.2617 5.8950 40 1 0.0101 -1.9731 3.7165 41 1 1.2900 -3.1716 3.3499 42 1 0.2863 -2.6353 5.9180 43 1 1.8644 -3.3944 5.5794 44 1 1.3823 -4.0022 8.4635 45 1 3.1300 -0.7218 -1.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049701165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:06 Heat of formation + Delta-G solvation = -91.183775 kcal Electronic energy + Delta-G solvation = -28980.403797 eV Core-core repulsion = 24863.019184 eV Total energy + Delta-G solvation = -4117.384613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.08151 -47.01974 -41.03964 -38.24337 -36.24102 -34.85549 -32.67689 -32.14267 -29.05624 -28.56457 -27.80146 -26.57913 -25.11971 -24.41675 -22.45819 -22.05922 -20.29545 -19.79810 -18.39711 -17.59393 -17.34305 -16.94667 -16.78974 -16.34928 -15.27394 -15.23516 -14.81850 -14.49146 -14.30188 -14.26104 -13.98850 -13.60192 -13.42242 -13.34118 -13.26526 -12.74147 -12.64378 -12.44765 -12.34284 -12.17609 -12.02186 -11.89044 -11.56753 -11.41911 -11.05926 -10.99067 -10.85539 -10.70143 -10.63388 -10.41543 -10.14749 -10.11208 -9.68135 -9.61381 -9.49953 -8.61840 -8.39783 -6.89161 -5.73077 -3.08236 2.53982 2.90002 3.39062 3.43451 3.44869 3.54773 3.95543 4.10830 4.24643 4.46098 4.56203 4.77397 4.91598 4.97822 5.01852 5.13838 5.16153 5.31838 5.35181 5.38394 5.41587 5.47651 5.50176 5.58695 5.61149 5.76108 5.84629 5.86627 5.92635 6.03868 6.18167 6.24811 6.33604 6.52432 6.54958 6.69185 6.91770 7.03387 7.41239 7.54387 7.61711 7.81310 8.15130 8.23789 9.18682 9.78543 10.43207 11.37636 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.003645 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.156191 B = 7679.691575 C = 8168.845098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.134 4.134 3 C -0.153 4.153 4 C 0.520 3.480 5 O -0.532 6.532 6 N -0.577 5.577 7 C 0.085 3.915 8 C -0.134 4.134 9 C -0.130 4.130 10 C 0.162 3.838 11 H 0.055 0.945 12 C 0.134 3.866 13 H 0.093 0.907 14 C -0.150 4.150 15 C 0.179 3.821 16 N -0.595 5.595 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.287 3.713 26 F -0.194 7.194 27 F -0.203 7.203 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 11.232 -16.823 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.138 4.138 3 C -0.210 4.210 4 C 0.306 3.694 5 O -0.408 6.408 6 N -0.308 5.308 7 C -0.037 4.037 8 C -0.173 4.173 9 C -0.171 4.171 10 C 0.053 3.947 11 H 0.072 0.928 12 C 0.030 3.970 13 H 0.111 0.889 14 C -0.189 4.189 15 C 0.055 3.945 16 N -0.320 5.320 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.233 3.767 26 F -0.175 7.175 27 F -0.185 7.185 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.420 10.569 -16.619 19.843 hybrid contribution 0.034 -0.053 0.915 0.918 sum -2.385 10.515 -15.704 19.049 Atomic orbital electron populations 1.22478 0.90751 1.04542 1.05030 1.21818 1.00010 0.98368 0.93627 1.22091 1.02458 0.91994 1.04408 1.20005 0.81657 0.83350 0.84382 1.90739 1.32708 1.31310 1.86065 1.46917 1.45645 1.31849 1.06363 1.22264 0.93255 0.87960 1.00186 1.21897 1.01957 0.98136 0.95281 1.22113 1.01042 0.97553 0.96343 1.20902 0.96089 0.90547 0.87160 0.92751 1.21173 0.99085 0.91730 0.85009 0.88865 1.22986 0.98166 0.97491 1.00293 1.21055 0.97294 0.90518 0.85680 1.44490 1.68222 1.13943 1.05308 1.18961 1.32147 1.01157 0.83534 0.90460 1.24801 1.00745 0.96318 0.98289 1.69959 1.46693 1.06563 1.33457 0.86200 0.78370 0.76832 0.84329 1.21192 1.21598 1.21136 1.21530 0.98233 0.75076 0.81882 1.93001 1.90854 1.37049 1.96582 1.92961 1.91258 1.81094 1.53164 0.88705 0.90699 0.91164 0.91091 0.90169 0.89616 0.88295 0.91417 0.91627 0.90956 0.91907 0.91782 0.92599 0.91918 0.94141 0.92923 0.93639 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 7.67 37.16 0.29 -1.29 16 2 C -0.13 -1.42 0.46 -155.66 -0.07 -1.49 16 3 C -0.15 -1.16 7.80 37.16 0.29 -0.87 16 4 C 0.52 7.57 6.19 -10.98 -0.07 7.50 16 5 O -0.53 -9.75 14.84 5.56 0.08 -9.67 16 6 N -0.58 -8.33 2.79 -167.57 -0.47 -8.80 16 7 C 0.09 0.93 3.83 -4.43 -0.02 0.91 16 8 C -0.13 -1.56 6.10 -26.73 -0.16 -1.72 16 9 C -0.13 -2.16 5.31 -26.80 -0.14 -2.30 16 10 C 0.16 3.18 3.29 -67.21 -0.22 2.96 16 11 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 12 C 0.13 2.46 2.75 -68.48 -0.19 2.27 16 13 H 0.09 1.92 7.05 -51.93 -0.37 1.56 16 14 C -0.15 -2.95 6.45 -25.63 -0.17 -3.11 16 15 C 0.18 4.35 5.39 -3.29 -0.02 4.34 16 16 N -0.60 -14.66 2.94 -163.75 -0.48 -15.14 16 17 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 20 N -0.92 -26.74 10.29 55.49 0.57 -26.17 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 C 0.29 3.27 3.66 37.16 0.14 3.40 16 26 F -0.19 -2.79 16.12 2.25 0.04 -2.75 16 27 F -0.20 -2.19 16.54 2.25 0.04 -2.15 16 28 H 0.09 0.76 3.79 -51.93 -0.20 0.56 16 29 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 30 H 0.07 0.76 7.80 -51.93 -0.41 0.35 16 31 H 0.07 0.51 7.91 -51.93 -0.41 0.10 16 32 H 0.08 0.47 7.91 -51.93 -0.41 0.06 16 33 H 0.09 0.64 5.55 -51.93 -0.29 0.35 16 34 H 0.10 0.80 2.89 -51.93 -0.15 0.65 16 35 H 0.07 0.71 7.21 -51.93 -0.37 0.34 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 43 H 0.05 1.44 7.25 -51.93 -0.38 1.06 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.12 1.19 7.98 -51.93 -0.41 0.77 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -31.44 342.76 -7.36 -38.80 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.69 Total: -0.07 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.59 Total: 3.98 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.38 Total: -50.11 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.07 Total: -4.90 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.44 -7.36 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049701165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.384 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds