Wall clock time and date at job start Tue Mar 31 2020 11:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.50704 * 109.46619 * 119.99512 * 2 1 3 5 5 O 1.21283 * 119.99658 * 128.82245 * 4 2 1 6 6 N 1.34777 * 120.00117 * 308.82661 * 4 2 1 7 7 C 1.45731 * 117.75909 * 356.04756 * 6 4 2 8 8 C 1.53056 * 109.54120 * 218.89732 * 7 6 4 9 9 C 1.52941 * 108.49509 * 306.17020 * 8 7 6 10 10 C 1.52930 * 109.79149 * 65.99956 * 9 8 7 11 11 H 1.08999 * 111.26757 * 66.65730 * 10 9 8 12 12 C 1.44195 * 117.75803 * 176.03108 * 6 4 2 13 13 H 1.09000 * 109.22239 * 27.38483 * 12 6 4 14 14 C 1.54067 * 111.76342 * 266.48686 * 12 6 4 15 15 C 1.54048 * 103.74346 * 206.75029 * 14 12 6 16 16 N 1.46883 * 107.71034 * 17.12801 * 15 14 12 17 17 C 1.36939 * 125.58075 * 182.96489 * 16 15 14 18 18 H 1.08000 * 119.99708 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00098 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00148 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99916 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47391 * 60.00020 * 21 19 17 23 23 H 1.48504 * 109.46998 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47178 * 299.99960 * 21 19 17 25 25 C 1.52996 * 109.46909 * 239.99196 * 2 1 3 26 26 F 1.39897 * 109.47653 * 300.00448 * 25 2 1 27 27 F 1.39904 * 109.47100 * 60.00956 * 25 2 1 28 28 H 1.08998 * 109.46893 * 300.00483 * 1 2 3 29 29 H 1.09000 * 109.46811 * 60.00389 * 1 2 3 30 30 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46962 * 203.64279 * 3 2 1 32 32 H 1.08998 * 109.47044 * 323.63973 * 3 2 1 33 33 H 1.09003 * 109.47542 * 83.64397 * 3 2 1 34 34 H 1.08993 * 109.45941 * 338.91614 * 7 6 4 35 35 H 1.09001 * 109.45403 * 98.88194 * 7 6 4 36 36 H 1.09000 * 109.63033 * 65.88812 * 8 7 6 37 37 H 1.09000 * 109.62826 * 186.48458 * 8 7 6 38 38 H 1.09000 * 109.41209 * 305.91306 * 9 8 7 39 39 H 1.08994 * 109.37962 * 186.07052 * 9 8 7 40 40 H 1.09001 * 110.56988 * 325.31652 * 14 12 6 41 41 H 1.09000 * 110.56621 * 88.03798 * 14 12 6 42 42 H 1.09004 * 109.81136 * 136.67756 * 15 14 12 43 43 H 1.09003 * 109.81382 * 257.50751 * 15 14 12 44 44 H 0.96997 * 119.99977 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.46737 * 180.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.8552 -1.5952 1.1266 6 7 1.5669 -0.3624 2.4467 7 6 0.6463 0.7646 2.5241 8 6 0.9583 1.5957 3.7710 9 6 0.9460 0.6688 4.9874 10 6 2.0976 -0.3325 4.8871 11 1 3.0634 0.1661 4.9689 12 6 2.0138 -1.1310 3.5819 13 1 2.9967 -1.5503 3.3669 14 6 1.0381 -2.2753 3.9168 15 6 1.2500 -2.5074 5.4249 16 7 1.9336 -1.3259 5.9671 17 6 2.3508 -1.1711 7.2621 18 1 2.8464 -0.2604 7.5646 19 6 2.1367 -2.1846 8.1862 20 7 1.5323 -3.2942 7.8177 21 14 2.7051 -1.9730 9.9530 22 1 2.0310 -0.7932 10.5520 23 1 2.3598 -3.1886 10.7329 24 1 4.1757 -1.7689 9.9788 25 6 2.0400 -0.7214 -1.2491 26 9 1.5736 -2.0404 -1.2491 27 9 1.5738 -0.0619 -2.3915 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.0488 1.4711 -0.4121 32 1 1.3810 2.0609 -0.6093 33 1 2.0540 1.8230 1.0213 34 1 0.7580 1.3865 1.6360 35 1 -0.3772 0.3941 2.5815 36 1 1.9421 2.0537 3.6690 37 1 0.2013 2.3704 3.8934 38 1 -0.0007 0.1298 5.0227 39 1 1.0595 1.2617 5.8950 40 1 0.0101 -1.9731 3.7165 41 1 1.2900 -3.1716 3.3499 42 1 0.2863 -2.6353 5.9180 43 1 1.8644 -3.3944 5.5794 44 1 1.3823 -4.0022 8.4635 45 1 3.1300 -0.7218 -1.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049701165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:06 Heat of formation + Delta-G solvation = -110.216907 kcal Electronic energy + Delta-G solvation = -28981.229136 eV Core-core repulsion = 24863.019184 eV Total energy + Delta-G solvation = -4118.209952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.99901 -47.95760 -42.22978 -39.71208 -37.41497 -36.15381 -34.07751 -33.88442 -30.88009 -30.02457 -28.48187 -27.44939 -26.65847 -26.02600 -23.66434 -23.28708 -22.05775 -20.99512 -19.68852 -18.91759 -18.50711 -18.26708 -17.85431 -17.42959 -16.79884 -16.42279 -16.34222 -16.00018 -15.56878 -15.31964 -15.06010 -14.91991 -14.57967 -14.36133 -14.30545 -14.17981 -13.92109 -13.62485 -13.45020 -13.36743 -13.15128 -13.08302 -12.90584 -12.76367 -12.61947 -12.36623 -12.29588 -12.09979 -12.07965 -11.86511 -11.74125 -11.57035 -11.38135 -11.18777 -10.70804 -10.65852 -9.67472 -8.92199 -7.84553 -5.21513 1.41933 1.45597 1.49031 1.55157 1.76217 2.49280 2.67778 3.01130 3.25584 3.33482 3.45088 3.55433 3.73769 3.82832 3.89128 3.96874 4.05279 4.09653 4.15440 4.16715 4.31388 4.52309 4.56275 4.57783 4.63063 4.67809 4.77275 4.78609 4.79892 4.88003 4.93762 5.05405 5.17356 5.20407 5.21756 5.35751 5.41338 5.54255 5.60332 5.63623 5.71951 6.17660 6.27675 7.00215 7.08099 7.75263 8.39353 9.25245 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.003645 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.156191 B = 7679.691575 C = 8168.845098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.153 4.153 4 C 0.516 3.484 5 O -0.577 6.577 6 N -0.576 5.576 7 C 0.078 3.922 8 C -0.123 4.123 9 C -0.121 4.121 10 C 0.157 3.843 11 H 0.050 0.950 12 C 0.153 3.847 13 H 0.064 0.936 14 C -0.135 4.135 15 C 0.193 3.807 16 N -0.616 5.616 17 C -0.237 4.237 18 H 0.086 0.914 19 C -0.065 4.065 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.278 1.278 25 C 0.281 3.719 26 F -0.215 7.215 27 F -0.197 7.197 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.246 0.754 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 14.822 -18.415 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.128 4.128 3 C -0.209 4.209 4 C 0.304 3.696 5 O -0.456 6.456 6 N -0.306 5.306 7 C -0.042 4.042 8 C -0.161 4.161 9 C -0.161 4.161 10 C 0.050 3.950 11 H 0.068 0.932 12 C 0.047 3.953 13 H 0.082 0.918 14 C -0.174 4.174 15 C 0.067 3.933 16 N -0.340 5.340 17 C -0.366 4.366 18 H 0.103 0.897 19 C -0.258 4.258 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.199 1.199 23 H -0.223 1.223 24 H -0.204 1.204 25 C 0.227 3.773 26 F -0.197 7.197 27 F -0.178 7.178 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.156 0.844 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.055 0.945 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.209 14.231 -18.249 23.364 hybrid contribution 0.315 -1.168 1.356 1.818 sum -2.893 13.063 -16.893 21.550 Atomic orbital electron populations 1.22544 0.89334 1.03904 1.06974 1.21817 1.00966 0.99488 0.90562 1.22190 1.03497 0.89716 1.05516 1.20781 0.80700 0.82783 0.85336 1.90724 1.34777 1.33395 1.86749 1.46916 1.46150 1.32414 1.05092 1.22688 0.92904 0.87025 1.01616 1.21878 1.03949 0.97729 0.92572 1.21905 0.98277 0.97217 0.98707 1.21126 0.97315 0.90381 0.86169 0.93177 1.20630 0.97303 0.91399 0.85990 0.91797 1.22775 0.99699 0.98231 0.96733 1.20690 0.94739 0.89386 0.88471 1.44741 1.68194 1.15249 1.05860 1.19373 1.31256 1.01199 0.84768 0.89666 1.25651 1.01563 0.96232 1.02373 1.70193 1.48401 1.07308 1.34274 0.85150 0.78085 0.76611 0.79469 1.19949 1.22350 1.20433 1.21743 0.98799 0.74229 0.82533 1.92960 1.91102 1.38872 1.96727 1.92970 1.91239 1.80762 1.52807 0.86997 0.88474 0.93187 0.90531 0.87271 0.88919 0.84420 0.90179 0.90638 0.87275 0.93379 0.92914 0.90697 0.92409 0.97234 0.97221 0.94493 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 7.67 71.98 0.55 -1.94 16 2 C -0.12 -2.25 0.46 -52.93 -0.02 -2.27 16 3 C -0.15 -1.59 7.80 71.98 0.56 -1.03 16 4 C 0.52 14.23 6.19 87.66 0.54 14.77 16 5 O -0.58 -21.30 14.84 -3.04 -0.05 -21.35 16 6 N -0.58 -15.53 2.79 -802.45 -2.24 -17.77 16 7 C 0.08 1.36 3.83 86.54 0.33 1.69 16 8 C -0.12 -2.33 6.10 30.59 0.19 -2.15 16 9 C -0.12 -3.81 5.31 30.55 0.16 -3.65 16 10 C 0.16 6.19 3.29 44.83 0.15 6.33 16 11 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 12 C 0.15 5.63 2.75 45.86 0.13 5.75 16 13 H 0.06 2.74 7.05 -2.39 -0.02 2.72 16 14 C -0.13 -5.47 6.45 31.31 0.20 -5.27 16 15 C 0.19 9.91 5.39 86.66 0.47 10.38 16 16 N -0.62 -31.40 2.94 -671.98 -1.97 -33.37 16 17 C -0.24 -13.15 10.27 84.03 0.86 -12.28 16 18 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 20 N -0.95 -58.15 10.29 21.65 0.22 -57.92 16 21 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 C 0.28 5.85 3.66 71.98 0.26 6.11 16 26 F -0.22 -6.08 16.12 44.97 0.72 -5.35 16 27 F -0.20 -3.65 16.54 44.97 0.74 -2.90 16 28 H 0.11 1.22 3.79 -2.39 -0.01 1.21 16 29 H 0.10 1.04 7.78 -2.39 -0.02 1.02 16 30 H 0.05 0.96 7.80 -2.39 -0.02 0.94 16 31 H 0.08 0.77 7.91 -2.39 -0.02 0.76 16 32 H 0.11 0.59 7.91 -2.39 -0.02 0.57 16 33 H 0.09 0.87 5.55 -2.39 -0.01 0.86 16 34 H 0.14 1.42 2.89 -2.39 -0.01 1.42 16 35 H 0.08 1.30 7.21 -2.39 -0.02 1.28 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.66 8.02 -2.39 -0.02 1.64 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.01 0.54 7.60 -2.38 -0.02 0.52 16 43 H 0.01 0.56 7.25 -2.39 -0.02 0.55 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 45 H 0.12 2.36 7.98 -2.39 -0.02 2.34 16 Total: -1.00 -74.01 342.76 5.30 -68.71 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.00 Total: 8.92 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 4.85 Total: 13.20 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.99 Total: -109.06 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 1.47 Total: -8.26 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.01 5.30 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049701165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.507 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds