Wall clock time and date at job start Tue Mar 31 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46767 * 2 1 4 4 C 1.50701 * 109.47003 * 119.99975 * 2 1 3 5 5 O 1.21283 * 119.99317 * 116.30094 * 4 2 1 6 6 N 1.34769 * 120.00243 * 296.29473 * 4 2 1 7 7 C 1.45735 * 117.75990 * 354.60185 * 6 4 2 8 8 C 1.53055 * 109.55833 * 141.10448 * 7 6 4 9 9 C 1.52946 * 108.49479 * 53.80001 * 8 7 6 10 10 C 1.53549 * 109.73358 * 293.98754 * 9 8 7 11 11 H 1.08998 * 111.61756 * 293.32132 * 10 9 8 12 12 C 1.44186 * 117.76301 * 174.61625 * 6 4 2 13 13 H 1.09005 * 109.22784 * 332.64059 * 12 6 4 14 14 C 1.54070 * 111.76538 * 93.53646 * 12 6 4 15 15 C 1.54061 * 103.73971 * 153.26179 * 14 12 6 16 16 N 1.46878 * 107.71274 * 342.87041 * 15 14 12 17 17 C 1.36939 * 125.58726 * 177.03151 * 16 15 14 18 18 H 1.07997 * 119.99892 * 186.93184 * 17 16 15 19 19 C 1.38817 * 119.99521 * 6.92818 * 17 16 15 20 20 N 1.31618 * 119.99992 * 7.46354 * 19 17 16 21 21 Si 1.86796 * 119.99736 * 187.45843 * 19 17 16 22 22 H 1.48507 * 109.46931 * 84.99120 * 21 19 17 23 23 H 1.48497 * 109.47291 * 204.98846 * 21 19 17 24 24 H 1.48503 * 109.47253 * 324.99409 * 21 19 17 25 25 C 1.52996 * 109.46778 * 240.00000 * 2 1 3 26 26 F 1.39908 * 109.47358 * 60.00104 * 25 2 1 27 27 F 1.39898 * 109.47021 * 179.97438 * 25 2 1 28 28 H 1.09003 * 109.47187 * 284.83039 * 1 2 3 29 29 H 1.08996 * 109.47398 * 44.83187 * 1 2 3 30 30 H 1.08998 * 109.47390 * 164.83461 * 1 2 3 31 31 H 1.08998 * 109.47184 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47207 * 300.00055 * 3 2 1 33 33 H 1.09000 * 109.47440 * 60.00315 * 3 2 1 34 34 H 1.09002 * 109.45329 * 261.12665 * 7 6 4 35 35 H 1.08994 * 109.45639 * 21.09378 * 7 6 4 36 36 H 1.09000 * 109.63527 * 173.50101 * 8 7 6 37 37 H 1.08999 * 109.63245 * 294.10356 * 8 7 6 38 38 H 1.09001 * 109.41534 * 54.10555 * 9 8 7 39 39 H 1.08995 * 109.41708 * 173.97259 * 9 8 7 40 40 H 1.09001 * 110.56632 * 34.70341 * 14 12 6 41 41 H 1.08999 * 110.70332 * 271.89057 * 14 12 6 42 42 H 1.09004 * 109.80911 * 223.31620 * 15 14 12 43 43 H 1.09004 * 109.80969 * 102.42271 * 15 14 12 44 44 H 0.96999 * 119.99606 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.47447 * 300.00010 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6732 -1.7342 1.1203 6 7 1.7695 -0.2081 2.4531 7 6 1.1009 1.0848 2.5264 8 6 0.0851 1.0721 3.6712 9 6 0.8029 0.6438 4.9521 10 6 1.2676 -0.8140 4.8232 11 1 0.4235 -1.5020 4.7772 12 6 2.1693 -0.9864 3.5992 13 1 2.1836 -2.0423 3.3287 14 6 3.5638 -0.5764 4.1099 15 6 3.5279 -0.9429 5.6059 16 7 2.1209 -1.1171 5.9896 17 6 1.6738 -1.5032 7.2250 18 1 0.6254 -1.7117 7.3790 19 6 2.5683 -1.6266 8.2794 20 7 3.8159 -1.2335 8.1335 21 14 2.0012 -2.3506 9.9053 22 1 2.0880 -3.8319 9.8447 23 1 2.8692 -1.8484 11.0005 24 1 0.5954 -1.9473 10.1633 25 6 2.0399 -0.7212 -1.2492 26 9 1.5736 -0.0617 -2.3916 27 9 3.4389 -0.7208 -1.2496 28 1 -0.3634 0.2630 0.9934 29 1 -0.3634 0.7288 -0.7245 30 1 -0.3634 -0.9918 -0.2688 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.8398 1.8659 2.7054 35 1 0.5856 1.2809 1.5862 36 1 -0.3322 2.0706 3.8016 37 1 -0.7130 0.3651 3.4448 38 1 1.6672 1.2875 5.1156 39 1 0.1200 0.7324 5.7970 40 1 3.7189 0.4949 3.9817 41 1 4.3432 -1.1393 3.5962 42 1 3.9746 -0.1408 6.1935 43 1 4.0739 -1.8716 5.7719 44 1 4.4407 -1.3194 8.8704 45 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049701168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:14 Heat of formation + Delta-G solvation = -89.966037 kcal Electronic energy + Delta-G solvation = -28973.358133 eV Core-core repulsion = 24856.026325 eV Total energy + Delta-G solvation = -4117.331808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.08035 -47.01475 -41.04714 -38.23265 -36.27005 -34.84493 -32.65051 -32.14221 -29.05719 -28.60402 -27.78431 -26.57499 -25.11472 -24.41337 -22.45024 -22.04142 -20.31621 -19.82307 -18.38519 -17.59551 -17.34775 -16.95137 -16.81572 -16.34046 -15.27745 -15.19901 -14.82488 -14.49981 -14.33418 -14.30257 -13.96528 -13.57525 -13.40541 -13.34442 -13.22110 -12.74912 -12.61397 -12.44001 -12.33940 -12.24368 -12.00325 -11.86175 -11.57682 -11.41921 -11.05589 -10.97747 -10.88955 -10.72423 -10.66911 -10.36014 -10.15817 -10.11729 -9.68009 -9.59813 -9.47342 -8.63769 -8.41285 -6.87841 -5.73661 -3.10079 2.54122 2.89409 3.38555 3.43586 3.45263 3.55014 3.95750 4.10791 4.24021 4.45958 4.55532 4.79345 4.90475 4.98428 5.00855 5.14479 5.17850 5.32861 5.34693 5.36701 5.41184 5.46781 5.49412 5.58040 5.61345 5.76595 5.83686 5.84844 5.94007 6.04917 6.17572 6.25147 6.32789 6.51794 6.56808 6.69951 6.92101 7.03533 7.39983 7.50301 7.64718 7.79267 8.14867 8.23398 9.17173 9.77849 10.42865 11.36302 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028617 B = 0.003615 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.210659 B = 7743.156500 C = 8176.889931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C -0.173 4.173 4 C 0.519 3.481 5 O -0.530 6.530 6 N -0.577 5.577 7 C 0.082 3.918 8 C -0.135 4.135 9 C -0.130 4.130 10 C 0.161 3.839 11 H 0.055 0.945 12 C 0.137 3.863 13 H 0.090 0.910 14 C -0.148 4.148 15 C 0.175 3.825 16 N -0.594 5.594 17 C -0.230 4.230 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.288 3.712 26 F -0.204 7.204 27 F -0.193 7.193 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.034 0.966 44 H 0.253 0.747 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 6.812 -17.416 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.230 4.230 4 C 0.305 3.695 5 O -0.406 6.406 6 N -0.307 5.307 7 C -0.040 4.040 8 C -0.173 4.173 9 C -0.170 4.170 10 C 0.052 3.948 11 H 0.073 0.927 12 C 0.032 3.968 13 H 0.108 0.892 14 C -0.188 4.188 15 C 0.050 3.950 16 N -0.318 5.318 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.233 3.767 26 F -0.185 7.185 27 F -0.174 7.174 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.296 6.237 -17.200 19.697 hybrid contribution -0.048 -0.236 0.866 0.899 sum -7.344 6.001 -16.334 18.888 Atomic orbital electron populations 1.22109 0.90347 1.04017 1.04645 1.21815 0.99489 0.98909 0.93615 1.22510 1.03009 0.92360 1.05108 1.20001 0.80164 0.84964 0.84357 1.90747 1.38972 1.24683 1.86242 1.46909 1.58100 1.20342 1.05389 1.22349 0.95871 0.84975 1.00788 1.21909 0.97753 1.01706 0.95970 1.22222 1.00110 0.99102 0.95584 1.21011 0.93021 0.93863 0.86879 0.92681 1.21086 0.95360 0.95383 0.84930 0.89209 1.22954 0.95906 1.00348 0.99551 1.21091 0.86079 1.00310 0.87523 1.44494 1.00730 1.79791 1.06809 1.18982 0.93598 1.38691 0.84590 0.90478 1.24804 0.95995 1.01367 0.97962 1.69964 1.03586 1.51309 1.31495 0.86156 0.77536 0.78943 0.83202 1.21536 1.21721 1.20726 1.21493 0.76172 0.97129 0.81876 1.92960 1.88427 1.83926 1.53189 1.93002 1.30278 1.97542 1.96574 0.89450 0.90236 0.91156 0.91113 0.90639 0.88558 0.91480 0.87872 0.90983 0.91639 0.91856 0.91768 0.92482 0.91876 0.92379 0.94734 0.93688 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.81 37.16 0.29 -0.90 16 2 C -0.13 -1.41 0.46 -155.66 -0.07 -1.48 16 3 C -0.17 -1.57 7.71 37.16 0.29 -1.28 16 4 C 0.52 7.52 6.26 -10.99 -0.07 7.45 16 5 O -0.53 -9.68 14.81 5.55 0.08 -9.60 16 6 N -0.58 -8.28 2.79 -167.71 -0.47 -8.75 16 7 C 0.08 0.90 3.70 -4.43 -0.02 0.88 16 8 C -0.13 -1.57 6.10 -26.73 -0.16 -1.73 16 9 C -0.13 -2.17 5.32 -26.47 -0.14 -2.31 16 10 C 0.16 3.14 3.34 -67.00 -0.22 2.92 16 11 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 12 C 0.14 2.48 2.65 -68.60 -0.18 2.30 16 13 H 0.09 1.81 7.18 -51.93 -0.37 1.44 16 14 C -0.15 -2.92 6.45 -25.62 -0.17 -3.09 16 15 C 0.17 4.24 5.42 -3.28 -0.02 4.22 16 16 N -0.59 -14.59 2.92 -163.50 -0.48 -15.06 16 17 C -0.23 -6.22 10.25 -15.06 -0.15 -6.37 16 18 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 19 C 0.00 -0.12 5.45 -17.43 -0.09 -0.22 16 20 N -0.92 -26.59 10.48 55.49 0.58 -26.01 16 21 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.29 3.25 3.72 37.16 0.14 3.39 16 26 F -0.20 -2.18 16.54 2.25 0.04 -2.14 16 27 F -0.19 -2.76 15.99 2.25 0.04 -2.72 16 28 H 0.09 0.65 5.40 -51.93 -0.28 0.37 16 29 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 30 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 31 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 32 H 0.07 0.58 7.80 -51.93 -0.41 0.17 16 33 H 0.10 0.75 3.89 -51.93 -0.20 0.55 16 34 H 0.07 0.72 7.60 -51.93 -0.39 0.33 16 35 H 0.10 0.84 2.63 -51.93 -0.14 0.70 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 43 H 0.03 0.93 7.85 -51.93 -0.41 0.52 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.12 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -31.39 343.46 -7.37 -38.75 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.73 Total: -0.19 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.58 Total: 3.78 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.36 Total: -49.82 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.07 Total: -4.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.39 -7.37 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049701168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.214 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds