Wall clock time and date at job start Tue Mar 31 2020 11:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.50703 * 109.47074 * 240.00453 * 2 1 3 5 5 O 1.21278 * 120.00134 * 126.71956 * 4 2 1 6 6 N 1.34778 * 119.99514 * 306.72371 * 4 2 1 7 7 C 1.47171 * 136.00386 * 354.23405 * 6 4 2 8 8 C 1.52671 * 87.96030 * 206.73595 * 7 6 4 9 9 C 1.47159 * 135.99855 * 174.60021 * 6 4 2 10 10 C 1.52553 * 113.91366 * 88.15292 * 8 7 6 11 11 C 1.53353 * 109.13204 * 190.30394 * 10 8 7 12 12 N 1.46885 * 108.75124 * 307.76395 * 11 10 8 13 13 C 1.36932 * 120.45851 * 235.64907 * 12 11 10 14 14 H 1.08000 * 120.00377 * 32.91704 * 13 12 11 15 15 C 1.38817 * 119.99822 * 212.91840 * 13 12 11 16 16 N 1.31620 * 120.00018 * 10.31555 * 15 13 12 17 17 Si 1.86797 * 120.00011 * 190.31530 * 15 13 12 18 18 H 1.48501 * 109.47352 * 90.00259 * 17 15 13 19 19 H 1.48505 * 109.46862 * 209.99854 * 17 15 13 20 20 H 1.48501 * 109.47436 * 330.00026 * 17 15 13 21 21 C 1.46896 * 119.07738 * 55.61733 * 12 11 10 22 22 C 1.52554 * 114.24719 * 220.74855 * 8 7 6 23 23 C 1.52993 * 109.47321 * 120.00280 * 2 1 3 24 24 F 1.39904 * 109.47302 * 174.83641 * 23 2 1 25 25 F 1.39901 * 109.47273 * 294.83627 * 23 2 1 26 26 H 1.09004 * 109.46968 * 305.70829 * 1 2 3 27 27 H 1.08998 * 109.47064 * 65.70616 * 1 2 3 28 28 H 1.08995 * 109.47081 * 185.71328 * 1 2 3 29 29 H 1.08997 * 109.47048 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47245 * 300.00204 * 3 2 1 31 31 H 1.09004 * 109.47205 * 60.00804 * 3 2 1 32 32 H 1.08993 * 113.48442 * 321.43335 * 7 6 4 33 33 H 1.08998 * 113.49020 * 91.94114 * 7 6 4 34 34 H 1.08999 * 113.49376 * 268.06394 * 9 6 4 35 35 H 1.09003 * 113.49039 * 38.56911 * 9 6 4 36 36 H 1.09002 * 109.52627 * 310.20048 * 10 8 7 37 37 H 1.09003 * 109.52828 * 70.40861 * 10 8 7 38 38 H 1.08995 * 109.59278 * 187.97870 * 11 10 8 39 39 H 1.09007 * 109.58508 * 67.53680 * 11 10 8 40 40 H 0.96999 * 120.00044 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.59200 * 184.59165 * 21 12 11 42 42 H 1.08998 * 109.58761 * 64.14619 * 21 12 11 43 43 H 1.08997 * 109.52913 * 289.73717 * 22 8 7 44 44 H 1.09001 * 109.52948 * 49.95403 * 22 8 7 45 45 H 1.09000 * 109.47115 * 54.83754 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.8265 -0.1624 -1.9653 6 7 1.5989 -1.9545 -1.5145 7 6 0.7557 -2.9598 -0.8478 8 6 1.5199 -4.0329 -1.6194 9 6 1.7664 -2.9063 -2.6243 10 6 2.7799 -4.5233 -0.9130 11 6 3.5918 -5.3936 -1.8800 12 7 2.7117 -6.4310 -2.4341 13 6 3.0416 -7.7550 -2.3194 14 1 3.5788 -8.1044 -1.4501 15 6 2.6856 -8.6482 -3.3207 16 7 2.2159 -8.2002 -4.4657 17 14 2.8732 -10.4858 -3.0430 18 1 1.6211 -11.0283 -2.4571 19 1 3.1444 -11.1572 -4.3395 20 1 4.0031 -10.7330 -2.1116 21 6 1.4724 -6.0282 -3.1122 22 6 0.6452 -5.1628 -2.1538 23 6 2.0400 -0.7213 1.2491 24 9 3.4340 -0.8250 1.1913 25 9 1.6732 0.0031 2.3884 26 1 -0.3633 0.5998 0.8345 27 1 -0.3633 0.4228 -0.9366 28 1 -0.3633 -1.0225 0.1023 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.9093 -3.0096 0.2301 33 1 -0.2972 -2.8944 -1.1219 34 1 0.9909 -2.8263 -3.3861 35 1 2.7722 -2.9112 -3.0444 36 1 3.3795 -3.6678 -0.6018 37 1 2.5018 -5.1120 -0.0388 38 1 4.4173 -5.8625 -1.3446 39 1 3.9818 -4.7753 -2.6886 40 1 1.9675 -8.8243 -5.1655 41 1 0.9022 -6.9151 -3.3884 42 1 1.7151 -5.4539 -4.0063 43 1 0.2921 -5.7742 -1.3234 44 1 -0.2077 -4.7424 -2.6867 45 1 1.6032 -1.7188 1.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050656722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:52 Heat of formation + Delta-G solvation = -84.814168 kcal Electronic energy + Delta-G solvation = -28482.536958 eV Core-core repulsion = 24365.428552 eV Total energy + Delta-G solvation = -4117.108406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.25190 -47.20416 -41.05853 -38.86808 -35.97020 -35.37644 -32.51850 -30.70538 -29.82926 -27.91868 -27.28972 -26.76047 -25.97903 -24.33083 -22.59755 -22.22534 -20.74913 -19.19177 -18.14290 -17.70967 -17.62885 -17.29545 -16.62872 -16.14512 -15.59978 -15.40910 -14.90329 -14.18343 -14.09404 -13.89605 -13.78312 -13.66291 -13.57085 -13.52493 -13.21496 -13.03562 -12.83886 -12.62736 -12.46299 -12.33338 -12.24625 -11.92913 -11.62595 -11.57181 -11.45186 -11.04936 -10.93533 -10.80031 -10.52282 -10.34096 -10.17474 -9.96009 -9.84225 -9.67728 -9.42766 -8.69845 -8.50372 -6.62738 -5.82007 -3.31576 2.35460 2.67074 3.34733 3.42081 3.43123 3.46806 3.81814 3.88397 4.12644 4.43057 4.46460 4.52141 4.68628 4.77892 4.96482 5.14088 5.17442 5.24271 5.32305 5.35750 5.39286 5.47647 5.48703 5.52571 5.58944 5.65125 5.74439 5.87997 5.94773 6.01597 6.02058 6.22414 6.39598 6.52113 6.55979 6.61016 6.78333 6.93085 7.29564 7.62956 7.68059 7.76525 8.01047 8.46041 9.19845 9.80442 10.38832 11.25758 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.003310 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.541017 B = 8457.444687 C = 8709.222398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C -0.132 4.132 4 C 0.552 3.448 5 O -0.526 6.526 6 N -0.640 5.640 7 C 0.095 3.905 8 C -0.074 4.074 9 C 0.115 3.885 10 C -0.108 4.108 11 C 0.147 3.853 12 N -0.590 5.590 13 C -0.255 4.255 14 H 0.063 0.937 15 C 0.006 3.994 16 N -0.904 5.904 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.172 3.828 22 C -0.125 4.125 23 C 0.273 3.727 24 F -0.194 7.194 25 F -0.198 7.198 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 15.014 10.064 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.189 4.189 4 C 0.340 3.660 5 O -0.401 6.401 6 N -0.375 5.375 7 C -0.028 4.028 8 C -0.074 4.074 9 C -0.007 4.007 10 C -0.148 4.148 11 C 0.021 3.979 12 N -0.313 5.313 13 C -0.384 4.384 14 H 0.081 0.919 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.734 3.266 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.046 3.954 22 C -0.165 4.165 23 C 0.219 3.781 24 F -0.176 7.176 25 F -0.179 7.179 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.488 15.449 9.578 19.300 hybrid contribution 0.038 -0.852 0.164 0.868 sum -6.450 14.597 9.742 18.697 Atomic orbital electron populations 1.21886 0.90330 1.03667 1.04151 1.21923 0.99549 0.98979 0.92781 1.21679 1.02787 0.91343 1.03099 1.19418 0.81055 0.79143 0.86401 1.90720 1.33366 1.64812 1.51233 1.49672 1.50116 1.13356 1.24366 1.23387 0.95878 0.85395 0.98138 1.21661 0.97115 0.93250 0.95419 1.23112 1.02994 0.83722 0.90822 1.21745 0.94774 0.99093 0.99167 1.20885 0.92447 0.90530 0.94065 1.43966 1.19268 1.01584 1.66441 1.19179 1.34745 0.83406 1.01115 0.91901 1.25192 1.00879 0.98512 0.94656 1.69959 1.47461 1.33251 1.04117 0.86274 0.77989 0.85360 0.77010 1.21411 1.21699 1.20410 1.20787 0.86875 0.97067 0.90627 1.22096 0.97175 0.96186 1.01018 1.21860 0.77383 0.96022 0.82813 1.93035 1.31107 1.96950 1.96470 1.92977 1.91289 1.80583 1.53048 0.90425 0.90654 0.91180 0.90927 0.90841 0.91066 0.91167 0.89301 0.89638 0.90066 0.92918 0.91687 0.92568 0.96333 0.93572 0.89139 0.96322 0.91849 0.92803 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.07 37.16 0.30 -0.81 16 2 C -0.13 -1.37 0.52 -155.66 -0.08 -1.45 16 3 C -0.13 -1.38 7.54 37.16 0.28 -1.10 16 4 C 0.55 7.84 6.35 -10.98 -0.07 7.77 16 5 O -0.53 -9.53 16.76 5.56 0.09 -9.44 16 6 N -0.64 -8.42 3.34 -185.30 -0.62 -9.04 16 7 C 0.09 1.02 5.41 -8.35 -0.05 0.98 16 8 C -0.07 -1.05 0.83 -155.16 -0.13 -1.18 16 9 C 0.12 1.68 7.57 -8.21 -0.06 1.61 16 10 C -0.11 -1.75 5.26 -26.78 -0.14 -1.89 16 11 C 0.15 2.96 6.41 -3.65 -0.02 2.94 16 12 N -0.59 -13.92 2.94 -172.18 -0.51 -14.42 16 13 C -0.25 -6.70 9.55 -15.06 -0.14 -6.85 16 14 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 15 C 0.01 0.17 5.04 -17.43 -0.09 0.09 16 16 N -0.90 -25.26 11.10 55.49 0.62 -24.64 16 17 Si 0.90 21.06 29.57 -169.99 -5.03 16.03 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.17 3.74 5.21 -3.64 -0.02 3.73 16 22 C -0.12 -2.01 5.31 -26.78 -0.14 -2.15 16 23 C 0.27 2.92 4.19 37.15 0.16 3.08 16 24 F -0.19 -2.66 16.60 2.25 0.04 -2.63 16 25 F -0.20 -2.09 16.40 2.25 0.04 -2.05 16 26 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.48 6.14 -51.93 -0.32 0.16 16 29 H 0.07 0.88 7.82 -51.93 -0.41 0.48 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 32 H 0.07 0.65 6.05 -51.93 -0.31 0.33 16 33 H 0.09 0.79 7.95 -51.93 -0.41 0.37 16 34 H 0.09 1.15 8.06 -51.93 -0.42 0.73 16 35 H 0.08 1.36 7.53 -51.93 -0.39 0.96 16 36 H 0.05 0.82 7.95 -51.93 -0.41 0.41 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.14 7.92 -51.93 -0.41 0.72 16 39 H 0.02 0.39 7.60 -51.93 -0.39 0.00 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.09 2.25 6.08 -51.93 -0.32 1.93 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 45 H 0.11 0.99 5.80 -51.93 -0.30 0.69 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -30.65 354.89 -7.23 -37.88 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.00 Total: -1.80 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.21 Total: 4.77 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.51 Total: -48.11 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.68 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.65 -7.23 -37.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050656722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.936 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds