Wall clock time and date at job start Tue Mar 31 2020 11:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.50703 * 109.47074 * 240.00453 * 2 1 3 5 5 O 1.21278 * 120.00134 * 126.71956 * 4 2 1 6 6 N 1.34778 * 119.99514 * 306.72371 * 4 2 1 7 7 C 1.47171 * 136.00386 * 354.23405 * 6 4 2 8 8 C 1.52671 * 87.96030 * 206.73595 * 7 6 4 9 9 C 1.47159 * 135.99855 * 174.60021 * 6 4 2 10 10 C 1.52553 * 113.91366 * 88.15292 * 8 7 6 11 11 C 1.53353 * 109.13204 * 190.30394 * 10 8 7 12 12 N 1.46885 * 108.75124 * 307.76395 * 11 10 8 13 13 C 1.36932 * 120.45851 * 235.64907 * 12 11 10 14 14 H 1.08000 * 120.00377 * 32.91704 * 13 12 11 15 15 C 1.38817 * 119.99822 * 212.91840 * 13 12 11 16 16 N 1.31620 * 120.00018 * 10.31555 * 15 13 12 17 17 Si 1.86797 * 120.00011 * 190.31530 * 15 13 12 18 18 H 1.48501 * 109.47352 * 90.00259 * 17 15 13 19 19 H 1.48505 * 109.46862 * 209.99854 * 17 15 13 20 20 H 1.48501 * 109.47436 * 330.00026 * 17 15 13 21 21 C 1.46896 * 119.07738 * 55.61733 * 12 11 10 22 22 C 1.52554 * 114.24719 * 220.74855 * 8 7 6 23 23 C 1.52993 * 109.47321 * 120.00280 * 2 1 3 24 24 F 1.39904 * 109.47302 * 174.83641 * 23 2 1 25 25 F 1.39901 * 109.47273 * 294.83627 * 23 2 1 26 26 H 1.09004 * 109.46968 * 305.70829 * 1 2 3 27 27 H 1.08998 * 109.47064 * 65.70616 * 1 2 3 28 28 H 1.08995 * 109.47081 * 185.71328 * 1 2 3 29 29 H 1.08997 * 109.47048 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47245 * 300.00204 * 3 2 1 31 31 H 1.09004 * 109.47205 * 60.00804 * 3 2 1 32 32 H 1.08993 * 113.48442 * 321.43335 * 7 6 4 33 33 H 1.08998 * 113.49020 * 91.94114 * 7 6 4 34 34 H 1.08999 * 113.49376 * 268.06394 * 9 6 4 35 35 H 1.09003 * 113.49039 * 38.56911 * 9 6 4 36 36 H 1.09002 * 109.52627 * 310.20048 * 10 8 7 37 37 H 1.09003 * 109.52828 * 70.40861 * 10 8 7 38 38 H 1.08995 * 109.59278 * 187.97870 * 11 10 8 39 39 H 1.09007 * 109.58508 * 67.53680 * 11 10 8 40 40 H 0.96999 * 120.00044 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.59200 * 184.59165 * 21 12 11 42 42 H 1.08998 * 109.58761 * 64.14619 * 21 12 11 43 43 H 1.08997 * 109.52913 * 289.73717 * 22 8 7 44 44 H 1.09001 * 109.52948 * 49.95403 * 22 8 7 45 45 H 1.09000 * 109.47115 * 54.83754 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.8265 -0.1624 -1.9653 6 7 1.5989 -1.9545 -1.5145 7 6 0.7557 -2.9598 -0.8478 8 6 1.5199 -4.0329 -1.6194 9 6 1.7664 -2.9063 -2.6243 10 6 2.7799 -4.5233 -0.9130 11 6 3.5918 -5.3936 -1.8800 12 7 2.7117 -6.4310 -2.4341 13 6 3.0416 -7.7550 -2.3194 14 1 3.5788 -8.1044 -1.4501 15 6 2.6856 -8.6482 -3.3207 16 7 2.2159 -8.2002 -4.4657 17 14 2.8732 -10.4858 -3.0430 18 1 1.6211 -11.0283 -2.4571 19 1 3.1444 -11.1572 -4.3395 20 1 4.0031 -10.7330 -2.1116 21 6 1.4724 -6.0282 -3.1122 22 6 0.6452 -5.1628 -2.1538 23 6 2.0400 -0.7213 1.2491 24 9 3.4340 -0.8250 1.1913 25 9 1.6732 0.0031 2.3884 26 1 -0.3633 0.5998 0.8345 27 1 -0.3633 0.4228 -0.9366 28 1 -0.3633 -1.0225 0.1023 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.9093 -3.0096 0.2301 33 1 -0.2972 -2.8944 -1.1219 34 1 0.9909 -2.8263 -3.3861 35 1 2.7722 -2.9112 -3.0444 36 1 3.3795 -3.6678 -0.6018 37 1 2.5018 -5.1120 -0.0388 38 1 4.4173 -5.8625 -1.3446 39 1 3.9818 -4.7753 -2.6886 40 1 1.9675 -8.8243 -5.1655 41 1 0.9022 -6.9151 -3.3884 42 1 1.7151 -5.4539 -4.0063 43 1 0.2921 -5.7742 -1.3234 44 1 -0.2077 -4.7424 -2.6867 45 1 1.6032 -1.7188 1.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050656722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:51 Heat of formation + Delta-G solvation = -102.884050 kcal Electronic energy + Delta-G solvation = -28483.320527 eV Core-core repulsion = 24365.428552 eV Total energy + Delta-G solvation = -4117.891975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.10967 -48.07900 -42.17564 -40.03215 -37.57660 -36.29056 -34.24790 -32.23267 -31.41508 -29.01945 -28.33304 -27.57684 -26.98431 -26.03358 -24.02119 -23.44641 -22.24194 -20.18390 -19.58946 -18.65884 -18.49855 -18.25611 -18.16519 -17.32386 -16.82366 -16.60890 -16.39974 -15.66756 -15.34599 -15.13870 -14.97226 -14.86742 -14.60444 -14.49671 -14.43125 -14.14155 -14.02478 -13.73940 -13.45744 -13.28193 -13.17165 -13.08191 -13.02575 -12.85695 -12.75974 -12.58726 -12.34969 -12.23478 -12.01147 -11.82163 -11.78312 -11.35322 -11.25494 -11.12910 -10.78905 -10.48705 -9.78336 -8.55559 -7.83526 -5.36144 1.32257 1.49058 1.50122 1.58657 1.64323 2.52923 2.65043 2.97852 3.06401 3.25563 3.33323 3.39771 3.66200 3.76211 3.82418 3.96527 3.98368 4.05233 4.25539 4.35902 4.47656 4.54589 4.60359 4.61521 4.66944 4.69771 4.72046 4.73397 4.81511 4.86221 4.95321 5.05436 5.09823 5.14778 5.17632 5.21304 5.36370 5.37621 5.58496 5.69110 5.86643 6.46396 6.64238 6.93267 7.21255 7.90237 8.42466 9.21050 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.003310 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.541017 B = 8457.444687 C = 8709.222398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.547 3.453 5 O -0.577 6.577 6 N -0.638 5.638 7 C 0.111 3.889 8 C -0.077 4.077 9 C 0.109 3.891 10 C -0.094 4.094 11 C 0.144 3.856 12 N -0.607 5.607 13 C -0.264 4.264 14 H 0.062 0.938 15 C -0.044 4.044 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.272 1.272 21 C 0.176 3.824 22 C -0.107 4.107 23 C 0.270 3.730 24 F -0.216 7.216 25 F -0.195 7.195 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.001 0.999 40 H 0.250 0.750 41 H 0.056 0.944 42 H -0.006 1.006 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 15.608 12.489 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.189 4.189 4 C 0.337 3.663 5 O -0.456 6.456 6 N -0.371 5.371 7 C -0.010 4.010 8 C -0.078 4.078 9 C -0.013 4.013 10 C -0.133 4.133 11 C 0.018 3.982 12 N -0.331 5.331 13 C -0.394 4.394 14 H 0.080 0.920 15 C -0.240 4.240 16 N -0.580 5.580 17 Si 0.794 3.206 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.197 1.197 21 C 0.050 3.950 22 C -0.146 4.146 23 C 0.216 3.784 24 F -0.198 7.198 25 F -0.176 7.176 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.012 0.988 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.877 16.048 12.046 21.942 hybrid contribution 0.865 -1.018 -0.645 1.483 sum -8.011 15.031 11.401 20.496 Atomic orbital electron populations 1.21946 0.87394 1.05256 1.05066 1.21939 1.01696 0.98138 0.90891 1.21685 1.01249 0.91900 1.04065 1.20068 0.80179 0.79085 0.86975 1.90699 1.35628 1.66094 1.53210 1.49686 1.50151 1.13230 1.24051 1.23474 0.96740 0.81630 0.99187 1.21526 0.96735 0.93285 0.96290 1.23116 1.01733 0.84728 0.91741 1.21531 0.95139 0.98406 0.98247 1.20959 0.92741 0.90180 0.94301 1.44221 1.20616 1.01452 1.66765 1.19479 1.34093 0.84933 1.00904 0.92043 1.25888 1.01289 1.02341 0.94503 1.70127 1.48815 1.34173 1.04841 0.85297 0.78159 0.80651 0.76479 1.20740 1.22415 1.19690 1.20633 0.86667 0.96297 0.91376 1.21841 0.97159 0.95766 0.99872 1.22155 0.76277 0.97260 0.82719 1.92999 1.33129 1.97073 1.96575 1.92983 1.91102 1.80710 1.52790 0.88548 0.90592 0.89430 0.93426 0.90972 0.88942 0.88334 0.85618 0.88195 0.93377 0.92317 0.90691 0.93374 0.98070 0.94128 0.92584 0.98835 0.91301 0.89730 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.07 71.98 0.58 -0.95 16 2 C -0.12 -2.29 0.52 -52.93 -0.03 -2.32 16 3 C -0.13 -2.57 7.54 71.98 0.54 -2.03 16 4 C 0.55 14.69 6.35 87.66 0.56 15.25 16 5 O -0.58 -21.16 16.76 -3.02 -0.05 -21.22 16 6 N -0.64 -15.13 3.34 -858.55 -2.87 -18.00 16 7 C 0.11 1.85 5.41 83.22 0.45 2.30 16 8 C -0.08 -2.02 0.83 -52.60 -0.04 -2.06 16 9 C 0.11 3.05 7.57 83.32 0.63 3.68 16 10 C -0.09 -2.89 5.26 30.56 0.16 -2.73 16 11 C 0.14 5.90 6.41 86.42 0.55 6.46 16 12 N -0.61 -29.15 2.94 -698.65 -2.06 -31.21 16 13 C -0.26 -14.10 9.55 84.04 0.80 -13.29 16 14 H 0.06 3.23 7.85 -2.91 -0.02 3.21 16 15 C -0.04 -2.42 5.04 84.86 0.43 -1.99 16 16 N -0.93 -53.77 11.10 21.65 0.24 -53.53 16 17 Si 0.97 43.80 29.57 68.60 2.03 45.83 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.18 7.74 5.21 86.42 0.45 8.19 16 22 C -0.11 -3.19 5.31 30.57 0.16 -3.02 16 23 C 0.27 4.91 4.19 71.98 0.30 5.21 16 24 F -0.22 -5.61 16.60 44.97 0.75 -4.87 16 25 F -0.19 -3.44 16.40 44.97 0.74 -2.70 16 26 H 0.10 0.76 8.08 -2.38 -0.02 0.74 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.66 6.14 -2.39 -0.01 0.65 16 29 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.37 7.68 -2.39 -0.02 1.36 16 32 H 0.10 1.18 6.05 -2.39 -0.01 1.17 16 33 H 0.13 1.35 7.95 -2.39 -0.02 1.33 16 34 H 0.10 2.50 8.06 -2.39 -0.02 2.49 16 35 H 0.05 1.66 7.53 -2.39 -0.02 1.64 16 36 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16 39 H 0.00 0.06 7.60 -2.38 -0.02 0.04 16 40 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.06 2.85 6.08 -2.39 -0.01 2.84 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 45 H 0.14 1.76 5.80 -2.39 -0.01 1.75 16 Total: -1.00 -70.83 354.89 5.31 -65.52 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.98 Total: 7.47 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 5.55 Total: 12.69 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.69 Total: -102.73 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 1.48 Total: -7.56 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.83 5.31 -65.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050656722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.364 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds