Wall clock time and date at job start Tue Mar 31 2020 10:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86806 * 119.99536 * 2 1 4 4 H 1.48495 * 109.46933 * 239.99983 * 3 2 1 5 5 H 1.48496 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46635 * 120.00224 * 3 2 1 7 7 C 1.38809 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00011 * 195.66304 * 7 2 1 9 9 N 1.36940 * 119.99972 * 15.67304 * 7 2 1 10 10 C 1.47598 * 118.64333 * 26.49874 * 9 7 2 11 11 C 1.53947 * 112.14079 * 137.89670 * 10 9 7 12 12 C 1.50879 * 109.99144 * 319.49354 * 11 10 9 13 13 C 1.52431 * 109.43356 * 92.01415 * 12 11 10 14 14 H 1.09003 * 108.55431 * 36.06294 * 13 12 11 15 15 N 1.46498 * 108.45420 * 153.70093 * 13 12 11 16 16 C 1.34774 * 120.00278 * 209.59841 * 15 13 12 17 17 O 1.21285 * 119.99835 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00310 * 180.02562 * 16 15 13 19 19 H 1.08991 * 110.01413 * 58.60985 * 18 16 15 20 20 C 1.53871 * 110.03374 * 180.02562 * 18 16 15 21 21 C 1.54266 * 106.60165 * 119.28282 * 20 18 16 22 22 C 1.54894 * 104.19319 * 23.60782 * 21 20 18 23 23 F 1.39898 * 110.75310 * 80.37297 * 22 21 20 24 24 F 1.39898 * 110.75468 * 203.74330 * 22 21 20 25 25 C 1.54269 * 110.03050 * 297.16581 * 18 16 15 26 26 C 1.47092 * 114.22068 * 274.84413 * 13 12 11 27 27 C 1.44578 * 118.64150 * 206.52078 * 9 7 2 28 28 H 0.96996 * 119.99950 * 359.97438 * 1 2 3 29 29 H 1.08995 * 108.95365 * 17.20276 * 10 9 7 30 30 H 1.09006 * 108.94486 * 258.57700 * 10 9 7 31 31 H 1.09002 * 109.36973 * 79.62429 * 11 10 9 32 32 H 1.09001 * 109.36810 * 199.37426 * 11 10 9 33 33 H 1.09005 * 109.49327 * 211.79212 * 12 11 10 34 34 H 1.09001 * 109.49107 * 331.86267 * 12 11 10 35 35 H 0.96999 * 119.99750 * 29.60014 * 15 13 12 36 36 H 1.08995 * 110.03444 * 238.57192 * 20 18 16 37 37 H 1.09004 * 110.03051 * 359.94814 * 20 18 16 38 38 H 1.09001 * 110.48505 * 142.28739 * 21 20 18 39 39 H 1.08999 * 110.48792 * 264.93240 * 21 20 18 40 40 H 1.09001 * 110.48696 * 335.78771 * 25 18 16 41 41 H 1.09006 * 110.48320 * 98.42288 * 25 18 16 42 42 H 1.08998 * 109.33006 * 302.52602 * 26 13 12 43 43 H 1.09002 * 109.32660 * 183.04755 * 26 13 12 44 44 H 1.08999 * 109.44994 * 30.73904 * 27 9 7 45 45 H 1.09002 * 109.44819 * 150.68678 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0603 -1.2195 0.2520 9 7 1.3639 -2.3659 -0.3214 10 6 0.1798 -2.2984 -1.2000 11 6 0.1716 -3.4241 -2.2501 12 6 1.5639 -3.6343 -2.7919 13 6 2.2709 -4.7069 -1.9714 14 1 1.5395 -5.4628 -1.6852 15 7 3.2873 -5.3410 -2.8146 16 6 3.6283 -6.6282 -2.6064 17 8 3.0933 -7.2617 -1.7212 18 6 4.6743 -7.2803 -3.4733 19 1 5.6133 -6.7316 -3.4017 20 6 4.8827 -8.7417 -3.0389 21 6 4.5234 -9.6188 -4.2560 22 6 4.7158 -8.6786 -5.4718 23 9 6.0677 -8.5895 -5.8205 24 9 3.9493 -9.1113 -6.5592 25 6 4.1953 -7.3210 -4.9392 26 6 2.9228 -4.2028 -0.7530 27 6 1.8692 -3.6098 0.2147 28 1 -0.4850 0.8400 0.0004 29 1 0.1734 -1.3363 -1.7123 30 1 -0.7193 -2.3779 -0.5888 31 1 -0.1797 -4.3468 -1.7882 32 1 -0.4967 -3.1515 -3.0670 33 1 1.5049 -3.9565 -3.8316 34 1 2.1226 -2.7002 -2.7315 35 1 3.7149 -4.8345 -3.5227 36 1 5.9232 -8.9026 -2.7569 37 1 4.2280 -8.9789 -2.2004 38 1 5.1978 -10.4725 -4.3233 39 1 3.4880 -9.9535 -4.1926 40 1 3.1069 -7.2846 -4.9860 41 1 4.6301 -6.4973 -5.5056 42 1 3.6415 -3.4288 -1.0223 43 1 3.4463 -5.0214 -0.2589 44 1 2.3305 -3.4261 1.1851 45 1 1.0466 -4.3154 0.3317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052432444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:10 Heat of formation + Delta-G solvation = -129.222480 kcal Electronic energy + Delta-G solvation = -27565.761747 eV Core-core repulsion = 23446.727652 eV Total energy + Delta-G solvation = -4119.034095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.15902 -47.32656 -40.34243 -38.12835 -36.60406 -34.85593 -32.56548 -31.66098 -30.49831 -29.24049 -28.41780 -26.08537 -24.17255 -23.47040 -22.15065 -21.54498 -20.25267 -19.78288 -19.20610 -18.14399 -17.30189 -16.88184 -16.69483 -16.21497 -15.84688 -15.44375 -15.09992 -14.47745 -14.30168 -14.21532 -13.96657 -13.65209 -13.58562 -13.43598 -13.36930 -12.93630 -12.68429 -12.55699 -12.38626 -11.99928 -11.82801 -11.78946 -11.43071 -11.25238 -11.08190 -10.96318 -10.84225 -10.73454 -10.48219 -10.29443 -10.14460 -9.94378 -9.77693 -9.66977 -9.58382 -8.88054 -8.40519 -6.67098 -5.78799 -3.22586 2.58750 3.14821 3.36317 3.38083 3.42686 3.43203 3.46666 3.82717 4.07492 4.48980 4.57637 4.67663 4.77588 4.89811 4.93580 5.02353 5.17642 5.19359 5.33211 5.43690 5.44918 5.54606 5.59587 5.69273 5.72356 5.89198 5.99500 6.03460 6.17629 6.30026 6.44447 6.47734 6.61360 6.73967 6.78424 6.81604 6.89581 7.02382 7.41966 7.59395 7.70002 7.81550 8.25810 8.46698 9.23785 9.90638 10.35859 11.28529 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.002787 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.920421 B =10045.928585 C =10109.887387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.178 3.822 11 C -0.141 4.141 12 C -0.112 4.112 13 C 0.160 3.840 14 H 0.075 0.925 15 N -0.724 5.724 16 C 0.517 3.483 17 O -0.537 6.537 18 C -0.113 4.113 19 H 0.108 0.892 20 C -0.117 4.117 21 C -0.156 4.156 22 C 0.277 3.723 23 F -0.192 7.192 24 F -0.196 7.196 25 C -0.150 4.150 26 C -0.154 4.154 27 C 0.162 3.838 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -15.892 -10.923 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.053 3.947 11 C -0.180 4.180 12 C -0.150 4.150 13 C 0.057 3.943 14 H 0.093 0.907 15 N -0.374 5.374 16 C 0.302 3.698 17 O -0.414 6.414 18 C -0.135 4.135 19 H 0.127 0.873 20 C -0.155 4.155 21 C -0.194 4.194 22 C 0.241 3.759 23 F -0.173 7.173 24 F -0.176 7.176 25 C -0.188 4.188 26 C -0.196 4.196 27 C 0.033 3.967 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.230 0.770 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.943 -16.201 -10.296 20.774 hybrid contribution 0.826 1.193 -0.644 1.587 sum 8.768 -15.008 -10.940 20.538 Atomic orbital electron populations 1.70061 1.05194 1.25512 1.54071 1.25030 0.95251 0.98307 1.00787 0.86406 0.78915 0.83565 0.78077 1.21121 1.21686 1.20937 1.19162 0.92368 0.85031 1.42326 0.91802 1.43673 1.32411 1.01825 1.53264 1.21018 0.88625 0.95523 0.89572 1.21981 0.95111 1.01012 0.99906 1.21228 0.97708 0.99174 0.96859 1.20040 0.89131 0.94654 0.90429 0.90695 1.46510 1.42431 1.11792 1.36653 1.20230 0.83101 0.82111 0.84374 1.90680 1.54195 1.63281 1.33242 1.21884 0.99460 0.98629 0.93533 0.87346 1.22143 1.03727 0.91000 0.98604 1.23327 1.05142 0.98491 0.92441 1.21983 0.73602 0.96795 0.83557 1.93011 1.33883 1.97097 1.93284 1.93009 1.75136 1.91100 1.58390 1.23269 1.03992 0.96132 0.95415 1.21869 1.00803 0.99878 0.97014 1.20564 0.93866 0.88266 0.93959 0.93632 0.90703 0.95720 0.93411 0.92530 0.93248 0.90056 0.77048 0.90255 0.87556 0.88924 0.88164 0.87765 0.88272 0.91965 0.92970 0.93327 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.01 55.49 0.61 -24.98 16 2 C 0.00 0.13 4.87 -17.43 -0.08 0.05 16 3 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.26 -6.83 9.44 -15.06 -0.14 -6.98 16 8 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -14.07 2.27 -172.09 -0.39 -14.46 16 10 C 0.18 4.06 4.66 -2.95 -0.01 4.05 16 11 C -0.14 -2.51 5.72 -27.30 -0.16 -2.67 16 12 C -0.11 -1.79 4.98 -28.09 -0.14 -1.93 16 13 C 0.16 2.52 1.96 -71.06 -0.14 2.38 16 14 H 0.07 1.31 6.66 -51.93 -0.35 0.96 16 15 N -0.72 -8.97 4.82 -56.88 -0.27 -9.24 16 16 C 0.52 6.48 6.84 -10.99 -0.08 6.41 16 17 O -0.54 -8.75 14.71 5.55 0.08 -8.67 16 18 C -0.11 -1.01 3.30 -90.65 -0.30 -1.30 16 19 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.12 -1.00 6.40 -25.61 -0.16 -1.16 16 21 C -0.16 -1.20 6.43 -25.07 -0.16 -1.36 16 22 C 0.28 2.46 2.51 -24.76 -0.06 2.40 16 23 F -0.19 -1.91 17.21 2.25 0.04 -1.87 16 24 F -0.20 -2.03 17.21 2.25 0.04 -1.99 16 25 C -0.15 -1.19 5.91 -25.09 -0.15 -1.34 16 26 C -0.15 -2.73 5.19 -28.58 -0.15 -2.87 16 27 C 0.16 3.37 5.66 -4.08 -0.02 3.34 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.07 1.91 6.33 -51.93 -0.33 1.58 16 30 H 0.02 0.62 8.03 -51.93 -0.42 0.21 16 31 H 0.05 0.83 7.32 -51.93 -0.38 0.45 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.67 8.04 -51.93 -0.42 0.25 16 34 H 0.08 1.49 7.47 -51.93 -0.39 1.10 16 35 H 0.40 3.90 8.61 -40.82 -0.35 3.55 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.11 1.11 6.39 -51.93 -0.33 0.77 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.86 7.85 -51.93 -0.41 0.45 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 44 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 45 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -30.09 355.89 -8.44 -38.53 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.12 Total: 2.13 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.76 Total: -0.99 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.05 Total: -48.69 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.09 -8.44 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052432444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.695 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds