Wall clock time and date at job start Tue Mar 31 2020 10:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99796 * 2 1 4 4 H 1.48506 * 109.46781 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47162 * 299.99266 * 3 2 1 6 6 H 1.48497 * 109.47453 * 59.99894 * 3 2 1 7 7 C 1.38810 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00319 * 160.39838 * 7 2 1 9 9 N 1.36939 * 119.99855 * 340.40642 * 7 2 1 10 10 C 1.43431 * 120.53724 * 156.68829 * 9 7 2 11 11 C 1.54906 * 116.07962 * 271.58338 * 10 9 7 12 12 C 1.54968 * 110.23298 * 318.54835 * 11 10 9 13 13 C 1.50133 * 110.74840 * 321.35174 * 12 11 10 14 14 H 1.09005 * 110.24485 * 338.47647 * 13 12 11 15 15 N 1.46495 * 110.25282 * 216.56201 * 13 12 11 16 16 C 1.34769 * 120.00086 * 156.93102 * 15 13 12 17 17 O 1.21279 * 120.00120 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00373 * 179.97438 * 16 15 13 19 19 H 1.09009 * 110.01392 * 59.29752 * 18 16 15 20 20 C 1.53871 * 110.03895 * 180.69386 * 18 16 15 21 21 C 1.54262 * 106.59963 * 119.28194 * 20 18 16 22 22 C 1.54893 * 104.19516 * 23.61594 * 21 20 18 23 23 F 1.39895 * 110.75651 * 80.37154 * 22 21 20 24 24 F 1.39903 * 110.75337 * 203.55674 * 22 21 20 25 25 C 1.54272 * 110.03010 * 297.91248 * 18 16 15 26 26 C 1.52526 * 105.53672 * 97.51291 * 13 12 11 27 27 C 1.46236 * 114.28345 * 270.52589 * 26 13 12 28 28 H 0.96995 * 119.99894 * 0.02562 * 1 2 3 29 29 H 1.09002 * 108.16284 * 33.30166 * 10 9 7 30 30 H 1.09003 * 108.16161 * 149.86719 * 10 9 7 31 31 H 1.09001 * 109.35534 * 78.84309 * 11 10 9 32 32 H 1.08999 * 109.35748 * 198.57371 * 11 10 9 33 33 H 1.09001 * 109.43538 * 200.90852 * 12 11 10 34 34 H 1.08999 * 109.05221 * 81.55358 * 12 11 10 35 35 H 0.96999 * 119.99578 * 336.93671 * 15 13 12 36 36 H 1.09000 * 110.03241 * 238.56993 * 20 18 16 37 37 H 1.09008 * 110.02673 * 359.97438 * 20 18 16 38 38 H 1.09010 * 110.48324 * 142.28995 * 21 20 18 39 39 H 1.08992 * 110.48931 * 264.93148 * 21 20 18 40 40 H 1.08995 * 110.48503 * 335.77871 * 25 18 16 41 41 H 1.09004 * 110.48509 * 98.42598 * 25 18 16 42 42 H 1.09006 * 108.52044 * 31.76748 * 26 13 12 43 43 H 1.09003 * 108.51959 * 149.28338 * 26 13 12 44 44 H 1.08998 * 109.84931 * 177.92098 * 27 26 13 45 45 H 1.09005 * 109.84332 * 298.90365 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0433 -1.2294 -0.3132 9 7 1.3850 -2.3535 0.3988 10 6 1.8644 -3.6322 -0.0398 11 6 1.2862 -4.1536 -1.3790 12 6 -0.2342 -3.8636 -1.4553 13 6 -0.8830 -4.0707 -0.1173 14 1 -0.2677 -4.7222 0.5034 15 7 -2.2196 -4.6463 -0.2854 16 6 -2.7891 -5.3338 0.7241 17 8 -2.1953 -5.4756 1.7720 18 6 -4.1643 -5.9254 0.5514 19 1 -4.1667 -6.6268 -0.2830 20 6 -4.5963 -6.6414 1.8431 21 6 -5.8738 -5.9303 2.3350 22 6 -6.4611 -5.2783 1.0586 23 9 -7.1670 -6.2190 0.3012 24 9 -7.2812 -4.1939 1.3883 25 6 -5.1944 -4.8043 0.3022 26 6 -0.9805 -2.6832 0.5086 27 6 0.1863 -2.2978 1.3014 28 1 -0.4850 0.8400 -0.0004 29 1 2.9484 -3.5734 -0.1378 30 1 1.6382 -4.3641 0.7357 31 1 1.7911 -3.6576 -2.2080 32 1 1.4486 -5.2291 -1.4483 33 1 -0.6946 -4.5308 -2.1841 34 1 -0.3842 -2.8311 -1.7706 35 1 -2.6946 -4.5326 -1.1235 36 1 -4.8090 -7.6901 1.6355 37 1 -3.8109 -6.5613 2.5948 38 1 -6.5759 -6.6525 2.7520 39 1 -5.6258 -5.1679 3.0734 40 1 -4.8367 -3.8597 0.7119 41 1 -5.4003 -4.7054 -0.7636 42 1 -1.1140 -1.9522 -0.2890 43 1 -1.8606 -2.6542 1.1510 44 1 0.0566 -1.2848 1.6824 45 1 0.3154 -2.9924 2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052432445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:14 Heat of formation + Delta-G solvation = -121.676039 kcal Electronic energy + Delta-G solvation = -27998.829391 eV Core-core repulsion = 23880.122534 eV Total energy + Delta-G solvation = -4118.706857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.04825 -47.20591 -40.14246 -38.04221 -36.47458 -34.62889 -32.56151 -31.12117 -30.57326 -29.34406 -28.33599 -26.10158 -24.10166 -23.11810 -22.16606 -21.44935 -20.02596 -19.81524 -19.08391 -17.98488 -17.14080 -16.74681 -16.65626 -16.10359 -15.64263 -15.32683 -14.88106 -14.30151 -14.17154 -14.08748 -13.89045 -13.74864 -13.53454 -13.40740 -13.14212 -12.90731 -12.62354 -12.32883 -12.03840 -11.89845 -11.67965 -11.61325 -11.43479 -11.24093 -10.97851 -10.84808 -10.79137 -10.76598 -10.36619 -10.17349 -10.02938 -9.82255 -9.56676 -9.51208 -9.27489 -8.68945 -8.35113 -6.72428 -5.80090 -3.18807 2.73643 3.30268 3.36800 3.45828 3.47595 3.50295 3.58303 3.95632 4.19650 4.50565 4.69165 4.80117 4.88982 5.00994 5.06028 5.15625 5.32099 5.32795 5.39323 5.54784 5.59124 5.66121 5.68276 5.75093 5.81661 6.00038 6.10415 6.24501 6.28843 6.46312 6.51295 6.63698 6.84004 6.87768 6.90809 7.05068 7.10436 7.24796 7.57431 7.73460 7.77782 7.94740 8.41795 8.43551 9.18497 9.86481 10.39806 11.27234 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.003352 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.105259 B = 8351.667121 C = 9079.637769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.154 3.846 11 C -0.139 4.139 12 C -0.113 4.113 13 C 0.145 3.855 14 H 0.084 0.916 15 N -0.717 5.717 16 C 0.516 3.484 17 O -0.534 6.534 18 C -0.113 4.113 19 H 0.106 0.894 20 C -0.117 4.117 21 C -0.156 4.156 22 C 0.277 3.723 23 F -0.193 7.193 24 F -0.195 7.195 25 C -0.150 4.150 26 C -0.131 4.131 27 C 0.169 3.831 28 H 0.251 0.749 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.394 0.606 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.028 0.972 44 H 0.091 0.909 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.440 -12.729 -0.564 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.102 0.898 15 N -0.366 5.366 16 C 0.301 3.699 17 O -0.411 6.411 18 C -0.134 4.134 19 H 0.125 0.875 20 C -0.154 4.154 21 C -0.194 4.194 22 C 0.241 3.759 23 F -0.174 7.174 24 F -0.176 7.176 25 C -0.189 4.189 26 C -0.171 4.171 27 C 0.045 3.955 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -11.106 -12.656 0.203 16.839 hybrid contribution -0.197 1.029 -0.793 1.313 sum -11.302 -11.628 -0.590 16.226 Atomic orbital electron populations 1.69966 1.05091 1.25051 1.54552 1.24874 0.95224 0.98145 1.01358 0.86279 0.79442 0.84216 0.77155 1.20429 1.21962 1.21693 1.19266 0.93650 0.85390 1.39278 0.91469 1.44270 1.33752 1.00892 1.52059 1.20430 0.96473 0.88220 0.92381 1.22851 0.94896 0.98407 1.01938 1.21719 0.96072 1.02435 0.94884 1.20537 0.80978 0.96193 0.98126 0.89759 1.46282 1.19622 1.54439 1.16247 1.20191 0.87166 0.78486 0.84055 1.90682 1.63992 1.59491 1.26963 1.21874 0.92801 0.97644 1.01098 0.87548 1.22137 0.97316 0.98933 0.97034 1.23325 0.98408 1.01915 0.95771 1.22025 0.84454 0.77400 0.92062 1.92999 1.81086 1.65564 1.77798 1.93013 1.75497 1.55936 1.93130 1.23297 0.92378 1.00427 1.02753 1.21325 0.98783 0.94638 1.02342 1.20093 0.84967 1.00532 0.89929 0.93867 0.94859 0.95289 0.92633 0.93742 0.94087 0.90124 0.77241 0.90376 0.87544 0.88998 0.88075 0.87511 0.88327 0.88000 0.95318 0.89115 0.97282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 9.43 55.49 0.52 -23.77 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.50 9.63 -15.06 -0.14 -6.65 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.18 2.60 -175.08 -0.46 -14.64 16 10 C 0.15 3.18 5.17 -4.66 -0.02 3.16 16 11 C -0.14 -2.50 6.41 -24.69 -0.16 -2.66 16 12 C -0.11 -1.97 5.32 -27.12 -0.14 -2.12 16 13 C 0.14 2.57 2.19 -69.60 -0.15 2.42 16 14 H 0.08 1.67 5.76 -51.93 -0.30 1.37 16 15 N -0.72 -10.10 4.91 -55.44 -0.27 -10.37 16 16 C 0.52 7.30 6.93 -10.99 -0.08 7.22 16 17 O -0.53 -9.66 14.89 5.56 0.08 -9.57 16 18 C -0.11 -1.13 3.29 -90.65 -0.30 -1.43 16 19 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 20 C -0.12 -1.12 6.40 -25.62 -0.16 -1.28 16 21 C -0.16 -1.41 6.43 -25.07 -0.16 -1.57 16 22 C 0.28 2.84 2.50 -24.70 -0.06 2.78 16 23 F -0.19 -2.11 17.21 2.25 0.04 -2.07 16 24 F -0.19 -2.34 17.22 2.25 0.04 -2.30 16 25 C -0.15 -1.44 5.90 -25.03 -0.15 -1.59 16 26 C -0.13 -2.77 4.74 -30.19 -0.14 -2.91 16 27 C 0.17 3.97 5.24 -5.20 -0.03 3.95 16 28 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 30 H 0.03 0.58 6.89 -51.93 -0.36 0.22 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.60 7.83 -51.93 -0.41 0.20 16 34 H 0.08 1.66 6.83 -51.93 -0.35 1.30 16 35 H 0.39 4.45 8.47 -40.82 -0.35 4.11 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 1.23 6.39 -51.92 -0.33 0.90 16 38 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.11 1.15 7.85 -51.93 -0.41 0.74 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 2.42 5.30 -51.93 -0.28 2.14 16 43 H 0.03 0.60 7.96 -51.93 -0.41 0.19 16 44 H 0.09 2.39 6.05 -51.93 -0.31 2.07 16 45 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -29.18 350.90 -8.43 -37.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.85 Total: 4.38 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.79 Total: -0.72 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.21 Total: -48.77 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.08 Total: -4.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.18 -8.43 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052432445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.069 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds