Wall clock time and date at job start Tue Mar 31 2020 10:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00423 * 2 1 4 4 H 1.48497 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47133 * 300.00737 * 3 2 1 6 6 H 1.48504 * 109.46662 * 60.00074 * 3 2 1 7 7 C 1.38812 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99992 * 195.68140 * 7 2 1 9 9 N 1.36943 * 120.00290 * 15.68427 * 7 2 1 10 10 C 1.44572 * 118.64668 * 206.48234 * 9 7 2 11 11 C 1.54863 * 109.59485 * 270.72573 * 10 9 7 12 12 C 1.47090 * 110.32652 * 288.72763 * 11 10 9 13 13 C 1.52566 * 114.32362 * 62.80546 * 12 11 10 14 14 H 1.09005 * 109.49128 * 34.95388 * 13 12 11 15 15 N 1.46500 * 109.49227 * 155.00479 * 13 12 11 16 16 C 1.34779 * 120.00118 * 205.00146 * 15 13 12 17 17 O 1.21286 * 119.99724 * 359.97438 * 16 15 13 18 18 C 1.50698 * 119.99930 * 179.97438 * 16 15 13 19 19 H 1.08996 * 110.43420 * 302.54110 * 18 16 15 20 20 C 1.54266 * 110.48408 * 179.97438 * 18 16 15 21 21 C 1.53873 * 106.59922 * 217.71125 * 20 18 16 22 22 C 1.54270 * 106.59925 * 0.02562 * 21 20 18 23 23 F 1.39901 * 110.48750 * 142.28404 * 22 21 20 24 24 F 1.39901 * 110.48701 * 264.79531 * 22 21 20 25 25 C 1.54889 * 104.19480 * 23.60958 * 22 21 20 26 26 C 1.50831 * 109.35545 * 274.98729 * 13 12 11 27 27 C 1.47613 * 118.63794 * 26.50230 * 9 7 2 28 28 H 0.96996 * 119.99260 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.44816 * 30.76249 * 10 9 7 30 30 H 1.09000 * 109.45316 * 150.69019 * 10 9 7 31 31 H 1.09001 * 109.32791 * 48.99214 * 11 10 9 32 32 H 1.09008 * 109.32805 * 168.46586 * 11 10 9 33 33 H 1.09001 * 108.51703 * 184.05962 * 12 11 10 34 34 H 1.09004 * 108.51331 * 301.55321 * 12 11 10 35 35 H 0.97001 * 119.99817 * 24.99568 * 15 13 12 36 36 H 1.09000 * 110.03441 * 336.99930 * 20 18 16 37 37 H 1.09000 * 110.02985 * 98.43056 * 20 18 16 38 38 H 1.09003 * 110.03011 * 119.28687 * 21 20 18 39 39 H 1.08998 * 110.03495 * 240.71755 * 21 20 18 40 40 H 1.09002 * 110.75653 * 203.74361 * 25 22 21 41 41 H 1.08999 * 110.75950 * 80.37225 * 25 22 21 42 42 H 1.09000 * 109.38535 * 331.69059 * 26 13 12 43 43 H 1.09004 * 109.34213 * 212.08073 * 26 13 12 44 44 H 1.09001 * 108.94020 * 258.55259 * 27 9 7 45 45 H 1.08997 * 108.94639 * 17.18500 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0601 -1.2198 0.2523 9 7 1.3638 -2.3659 -0.3217 10 6 1.8693 -3.6101 0.2137 11 6 2.9229 -4.2021 -0.7545 12 6 2.2711 -4.7057 -1.9731 13 6 1.5627 -3.6337 -2.7957 14 1 2.1220 -2.7001 -2.7352 15 7 1.4807 -4.0647 -4.1935 16 6 1.3768 -3.1483 -5.1763 17 8 1.3506 -1.9668 -4.9035 18 6 1.2930 -3.5917 -6.6141 19 1 2.1614 -4.1955 -6.8774 20 6 1.1800 -2.3705 -7.5500 21 6 0.2114 -2.7687 -8.6773 22 6 -0.2310 -4.2178 -8.3869 23 9 -1.5802 -4.3925 -8.7129 24 9 0.5643 -5.1241 -9.0965 25 6 -0.0162 -4.3821 -6.8618 26 6 0.1720 -3.4234 -2.2512 27 6 0.1798 -2.2982 -1.2006 28 1 -0.4849 0.8401 0.0004 29 1 2.3306 -3.4268 1.1841 30 1 1.0468 -4.3158 0.3307 31 1 3.6413 -3.4277 -1.0233 32 1 3.4468 -5.0208 -0.2609 33 1 3.0270 -5.1794 -2.5995 34 1 1.5400 -5.4620 -1.6873 35 1 1.5013 -5.0097 -4.4116 36 1 0.7840 -1.5155 -7.0020 37 1 2.1576 -2.1274 -7.9662 38 1 -0.6548 -2.1070 -8.6764 39 1 0.7189 -2.7189 -9.6406 40 1 0.1118 -5.4326 -6.6006 41 1 -0.8442 -3.9428 -6.3055 42 1 -0.1793 -4.3464 -1.7898 43 1 -0.4979 -3.1516 -3.0670 44 1 -0.7194 -2.3781 -0.5896 45 1 0.1736 -1.3359 -1.7125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052432446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:19 Heat of formation + Delta-G solvation = -129.252720 kcal Electronic energy + Delta-G solvation = -27914.888821 eV Core-core repulsion = 23795.853415 eV Total energy + Delta-G solvation = -4119.035406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.13254 -47.25728 -40.11103 -38.03834 -36.54880 -34.68739 -32.89025 -31.11791 -30.58145 -29.37513 -28.31134 -25.97262 -24.15647 -23.30283 -22.23080 -21.31920 -20.26055 -19.69758 -19.20705 -18.05830 -17.23424 -16.68816 -16.57643 -16.19032 -15.76854 -15.27178 -14.99443 -14.46250 -14.33215 -14.12016 -13.97862 -13.58905 -13.57947 -13.35874 -13.20681 -12.94311 -12.46851 -12.44065 -12.37715 -11.92448 -11.92121 -11.66443 -11.51322 -11.08101 -11.00684 -10.93141 -10.85135 -10.75916 -10.37208 -10.19322 -10.06966 -9.93394 -9.70111 -9.56215 -9.51519 -8.74943 -8.31590 -6.61262 -5.71702 -3.15479 2.74092 3.23001 3.43331 3.48344 3.51440 3.52626 3.55657 3.91447 4.12877 4.56889 4.63613 4.79179 4.84614 4.94593 5.00924 5.11324 5.18350 5.24754 5.29331 5.49791 5.52212 5.58068 5.60940 5.74654 5.80377 6.00124 6.01741 6.10626 6.20837 6.29532 6.44358 6.49579 6.59507 6.68486 6.76713 6.86030 7.00323 7.06890 7.48118 7.72373 7.77675 7.89993 8.44022 8.54118 9.30464 9.97528 10.41645 11.35914 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017117 B = 0.003570 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.416987 B = 7842.197665 C = 8650.164406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.106 4.106 13 C 0.153 3.847 14 H 0.103 0.897 15 N -0.726 5.726 16 C 0.515 3.485 17 O -0.520 6.520 18 C -0.113 4.113 19 H 0.108 0.892 20 C -0.111 4.111 21 C -0.160 4.160 22 C 0.279 3.721 23 F -0.197 7.197 24 F -0.195 7.195 25 C -0.148 4.148 26 C -0.146 4.146 27 C 0.183 3.817 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.391 0.609 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -12.040 -15.286 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.144 4.144 13 C 0.050 3.950 14 H 0.121 0.879 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.395 6.395 18 C -0.135 4.135 19 H 0.126 0.874 20 C -0.149 4.149 21 C -0.198 4.198 22 C 0.243 3.757 23 F -0.178 7.178 24 F -0.176 7.176 25 C -0.186 4.186 26 C -0.186 4.186 27 C 0.057 3.943 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.224 0.776 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.112 -11.056 -15.089 18.739 hybrid contribution 0.341 0.130 -0.341 0.499 sum 1.453 -10.926 -15.430 18.963 Atomic orbital electron populations 1.70066 1.05246 1.25268 1.54139 1.25004 0.95231 0.98320 1.00566 0.86283 0.79402 0.84254 0.77189 1.20313 1.21519 1.21833 1.19215 0.92375 0.85036 1.42274 0.91731 1.43679 1.32430 1.01904 1.53249 1.20689 0.93882 0.88393 0.94207 1.21448 1.00348 0.99954 0.96900 1.20563 0.99129 0.97445 0.97265 1.20548 0.97715 0.99310 0.77446 0.87895 1.46334 1.74727 1.09095 1.07450 1.20135 0.76856 0.86510 0.86583 1.90791 1.48328 1.16769 1.83613 1.22123 0.98816 0.98589 0.93983 0.87440 1.22063 1.00071 0.98315 0.94402 1.23165 1.02241 0.92903 1.01519 1.21908 0.72927 0.89380 0.91467 1.93015 1.34328 1.96370 1.94046 1.93010 1.73715 1.70159 1.80700 1.23415 0.99476 1.03075 0.92637 1.22428 0.95414 1.00876 0.99894 1.20940 0.88541 0.95657 0.89154 0.93782 0.93584 0.95017 0.91945 0.93040 0.93456 0.92833 0.77584 0.88162 0.90127 0.88254 0.88958 0.88396 0.87476 0.93608 0.92706 0.95697 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 11.01 55.49 0.61 -25.97 16 2 C 0.01 0.21 4.87 -17.43 -0.08 0.12 16 3 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.26 -7.11 9.44 -15.06 -0.14 -7.25 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.50 2.27 -172.09 -0.39 -14.89 16 10 C 0.16 3.16 5.66 -4.09 -0.02 3.14 16 11 C -0.15 -2.45 5.74 -28.59 -0.16 -2.61 16 12 C -0.11 -1.57 4.69 -29.79 -0.14 -1.71 16 13 C 0.15 2.61 2.06 -69.24 -0.14 2.47 16 14 H 0.10 2.26 6.92 -51.93 -0.36 1.90 16 15 N -0.73 -9.65 4.92 -55.09 -0.27 -9.92 16 16 C 0.51 7.39 6.94 -10.99 -0.08 7.32 16 17 O -0.52 -10.16 15.08 5.55 0.08 -10.08 16 18 C -0.11 -1.13 3.26 -90.10 -0.29 -1.43 16 19 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.11 -1.10 6.18 -25.61 -0.16 -1.25 16 21 C -0.16 -1.36 6.41 -25.61 -0.16 -1.52 16 22 C 0.28 2.67 2.49 -25.07 -0.06 2.61 16 23 F -0.20 -2.18 17.16 2.25 0.04 -2.14 16 24 F -0.19 -2.02 17.17 2.25 0.04 -1.98 16 25 C -0.15 -1.32 5.89 -24.72 -0.15 -1.46 16 26 C -0.15 -2.75 5.38 -27.33 -0.15 -2.90 16 27 C 0.18 4.40 4.67 -2.94 -0.01 4.39 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 0.95 7.99 -51.93 -0.41 0.53 16 30 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 34 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 35 H 0.39 3.81 8.60 -40.82 -0.35 3.46 16 36 H 0.10 1.22 6.85 -51.93 -0.36 0.87 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.80 8.11 -51.93 -0.42 0.37 16 39 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 1.03 8.05 -51.93 -0.42 0.61 16 42 H 0.05 0.79 7.32 -51.93 -0.38 0.41 16 43 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 44 H 0.02 0.65 8.03 -51.93 -0.42 0.23 16 45 H 0.08 2.19 6.33 -51.93 -0.33 1.86 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -31.86 356.73 -8.46 -40.32 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.15 Total: 2.06 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.76 Total: -0.08 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.05 Total: -50.78 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.86 -8.46 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052432446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.936 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds