Wall clock time and date at job start Tue Mar 31 2020 10:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99749 * 2 1 4 4 H 1.48501 * 109.46623 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47115 * 299.99323 * 3 2 1 6 6 H 1.48496 * 109.47160 * 59.99954 * 3 2 1 7 7 C 1.38811 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99692 * 195.67401 * 7 2 1 9 9 N 1.36931 * 120.00597 * 15.67518 * 7 2 1 10 10 C 1.44573 * 118.64455 * 206.49516 * 9 7 2 11 11 C 1.54866 * 109.60089 * 270.72077 * 10 9 7 12 12 C 1.47088 * 110.32550 * 288.73523 * 11 10 9 13 13 C 1.52571 * 114.32422 * 62.79942 * 12 11 10 14 14 H 1.09003 * 109.49084 * 34.97746 * 13 12 11 15 15 N 1.46510 * 109.49038 * 155.02190 * 13 12 11 16 16 C 1.34769 * 120.00105 * 205.00310 * 15 13 12 17 17 O 1.21286 * 119.99870 * 359.97438 * 16 15 13 18 18 C 1.50695 * 120.00073 * 179.97438 * 16 15 13 19 19 C 1.53003 * 109.47408 * 179.97438 * 18 16 15 20 20 C 1.53781 * 113.61783 * 175.00077 * 19 18 16 21 21 C 1.53779 * 87.08127 * 139.97969 * 20 19 18 22 22 F 1.39902 * 113.61395 * 89.11558 * 21 20 19 23 23 F 1.39905 * 113.61449 * 220.02160 * 21 20 19 24 24 C 1.53781 * 113.61220 * 272.50095 * 19 18 16 25 25 C 1.50876 * 109.35858 * 274.98653 * 13 12 11 26 26 C 1.47611 * 118.64276 * 26.51500 * 9 7 2 27 27 H 0.96997 * 119.99869 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.45038 * 150.68632 * 10 9 7 29 29 H 1.08994 * 109.45519 * 30.76093 * 10 9 7 30 30 H 1.08997 * 109.33268 * 168.47086 * 11 10 9 31 31 H 1.09004 * 109.18253 * 48.90980 * 11 10 9 32 32 H 1.08995 * 108.51429 * 301.54756 * 12 11 10 33 33 H 1.08999 * 108.39418 * 183.96441 * 12 11 10 34 34 H 0.96998 * 119.99398 * 24.99544 * 15 13 12 35 35 H 1.09001 * 109.47172 * 60.00063 * 18 16 15 36 36 H 1.08996 * 109.47487 * 299.99630 * 18 16 15 37 37 H 1.09000 * 112.90797 * 43.74838 * 19 18 16 38 38 H 1.08998 * 113.61295 * 25.43608 * 20 19 18 39 39 H 1.08993 * 113.69420 * 254.54391 * 20 19 18 40 40 H 1.09003 * 113.61758 * 105.47206 * 24 19 18 41 41 H 1.09000 * 113.61669 * 334.56432 * 24 19 18 42 42 H 1.09004 * 109.36541 * 212.07510 * 25 13 12 43 43 H 1.08990 * 109.37064 * 331.69340 * 25 13 12 44 44 H 1.09003 * 108.94394 * 258.55546 * 26 9 7 45 45 H 1.08999 * 108.94482 * 17.18204 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0601 -1.2195 0.2532 9 7 1.3638 -2.3662 -0.3193 10 6 1.8693 -3.6097 0.2175 11 6 2.9230 -4.2030 -0.7500 12 6 2.2712 -4.7079 -1.9681 13 6 1.5628 -3.6367 -2.7919 14 1 2.1225 -2.7031 -2.7327 15 7 1.4805 -4.0695 -4.1892 16 6 1.3766 -3.1543 -5.1731 17 8 1.3509 -1.9725 -4.9018 18 6 1.2925 -3.5995 -6.6103 19 6 1.1815 -2.3731 -7.5185 20 6 1.2122 -2.7122 -9.0181 21 6 0.1236 -1.6417 -9.2021 22 9 0.6324 -0.3589 -9.4322 23 9 -0.8711 -2.0052 -10.1163 24 6 -0.2643 -1.8966 -7.7360 25 6 0.1716 -3.4256 -2.2475 26 6 0.1798 -2.2995 -1.1984 27 1 -0.4850 0.8400 -0.0004 28 1 1.0468 -4.3152 0.3352 29 1 2.3306 -3.4255 1.1877 30 1 3.4467 -5.0211 -0.2556 31 1 3.6392 -3.4267 -1.0193 32 1 1.5401 -5.4638 -1.6815 33 1 3.0289 -5.1804 -2.5931 34 1 1.5009 -5.0147 -4.4061 35 1 0.4143 -4.2310 -6.7443 36 1 2.1886 -4.1636 -6.8691 37 1 1.8671 -1.5737 -7.2375 38 1 0.8729 -3.7231 -9.2442 39 1 2.1555 -2.4638 -9.5042 40 1 -0.5124 -0.9888 -7.1859 41 1 -1.0072 -2.6845 -7.6115 42 1 -0.4985 -3.1545 -3.0634 43 1 -0.1795 -4.3481 -1.7852 44 1 -0.7194 -2.3787 -0.5874 45 1 0.1737 -1.3377 -1.7113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052503455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:58 Heat of formation + Delta-G solvation = -101.278603 kcal Electronic energy + Delta-G solvation = -27499.862204 eV Core-core repulsion = 23382.039846 eV Total energy + Delta-G solvation = -4117.822358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.95378 -47.29571 -39.96788 -38.37357 -37.27037 -34.62751 -32.86637 -31.28371 -30.64979 -29.59411 -26.48464 -25.98323 -24.29323 -23.36895 -22.96484 -20.43009 -20.20621 -19.82885 -19.20021 -17.59371 -16.95282 -16.75574 -16.57556 -16.39624 -15.87586 -15.28167 -15.05929 -14.49760 -14.28028 -14.16776 -13.75607 -13.63348 -13.52423 -13.39288 -13.14828 -12.87230 -12.76169 -12.64107 -12.39910 -11.90454 -11.57334 -11.48742 -11.35551 -11.08054 -11.05120 -10.85186 -10.75010 -10.60717 -10.36219 -10.18112 -10.05502 -9.91910 -9.68743 -9.55012 -9.45953 -8.70171 -8.30358 -6.60213 -5.70600 -3.14414 2.88718 3.27443 3.35766 3.44527 3.52723 3.53664 3.61436 4.06743 4.13008 4.20334 4.58007 4.81476 4.97844 5.13528 5.14796 5.18077 5.22443 5.30257 5.34706 5.45405 5.51267 5.57446 5.59391 5.65614 5.75766 6.01708 6.06861 6.12357 6.21750 6.31612 6.45752 6.50443 6.61281 6.71015 6.78705 6.86921 7.02622 7.08764 7.49635 7.77242 7.79989 7.91076 8.52072 8.55290 9.31555 9.98644 10.42753 11.36988 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003558 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.420344 B = 7867.270449 C = 9170.037178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.156 3.844 11 C -0.146 4.146 12 C -0.105 4.105 13 C 0.153 3.847 14 H 0.102 0.898 15 N -0.730 5.730 16 C 0.504 3.496 17 O -0.524 6.524 18 C -0.129 4.129 19 C -0.087 4.087 20 C -0.162 4.162 21 C 0.251 3.749 22 F -0.179 7.179 23 F -0.195 7.195 24 C -0.159 4.159 25 C -0.146 4.146 26 C 0.183 3.817 27 H 0.252 0.748 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -12.662 -15.966 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.144 4.144 13 C 0.050 3.950 14 H 0.120 0.880 15 N -0.381 5.381 16 C 0.289 3.711 17 O -0.400 6.400 18 C -0.169 4.169 19 C -0.106 4.106 20 C -0.200 4.200 21 C 0.215 3.785 22 F -0.160 7.160 23 F -0.175 7.175 24 C -0.197 4.197 25 C -0.186 4.186 26 C 0.057 3.943 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.574 -11.625 -15.781 19.663 hybrid contribution 0.299 0.477 -0.346 0.661 sum 1.873 -11.147 -16.126 19.693 Atomic orbital electron populations 1.70063 1.05250 1.25272 1.54135 1.25000 0.95226 0.98312 1.00560 0.86289 0.79403 0.84271 0.77197 1.20312 1.21502 1.21837 1.19208 0.92363 0.85022 1.42302 0.91749 1.43674 1.32439 1.01913 1.53226 1.20691 0.93885 0.88408 0.94204 1.21455 1.00382 0.99922 0.96951 1.20559 0.99064 0.97482 0.97249 1.20528 0.97613 0.99224 0.77652 0.87983 1.46351 1.75131 1.09115 1.07477 1.20490 0.76849 0.86614 0.87162 1.90800 1.48263 1.16807 1.84085 1.21608 1.04471 0.98432 0.92352 1.22161 0.97475 0.98604 0.92365 1.24184 0.99086 0.99279 0.97424 1.22128 0.86950 0.80578 0.88857 1.93027 1.87086 1.40403 1.95495 1.92999 1.63228 1.91093 1.70229 1.24179 0.98890 1.04892 0.91732 1.22422 0.95498 1.00781 0.99864 1.20930 0.88501 0.95682 0.89168 0.93784 0.95038 0.93597 0.93050 0.91942 0.92875 0.93499 0.77664 0.88707 0.88458 0.86645 0.87005 0.88777 0.88241 0.87197 0.92714 0.93700 0.95757 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 11.01 55.49 0.61 -26.14 16 2 C 0.01 0.22 4.87 -17.43 -0.08 0.13 16 3 Si 0.90 22.53 29.58 -169.99 -5.03 17.50 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.26 -7.15 9.44 -15.06 -0.14 -7.29 16 8 H 0.06 1.76 7.88 -52.48 -0.41 1.34 16 9 N -0.59 -14.58 2.27 -172.11 -0.39 -14.98 16 10 C 0.16 3.18 5.65 -4.09 -0.02 3.15 16 11 C -0.15 -2.46 5.74 -28.58 -0.16 -2.63 16 12 C -0.11 -1.57 4.69 -29.79 -0.14 -1.71 16 13 C 0.15 2.63 2.06 -69.21 -0.14 2.49 16 14 H 0.10 2.26 6.92 -51.93 -0.36 1.90 16 15 N -0.73 -9.58 4.93 -55.06 -0.27 -9.86 16 16 C 0.50 7.08 7.65 -10.99 -0.08 7.00 16 17 O -0.52 -10.24 15.42 5.55 0.09 -10.16 16 18 C -0.13 -1.11 5.54 -27.88 -0.15 -1.27 16 19 C -0.09 -0.85 3.13 -89.81 -0.28 -1.13 16 20 C -0.16 -1.23 7.43 -25.92 -0.19 -1.42 16 21 C 0.25 2.64 3.28 -25.92 -0.08 2.55 16 22 F -0.18 -2.28 17.38 2.25 0.04 -2.24 16 23 F -0.19 -2.22 17.41 2.25 0.04 -2.18 16 24 C -0.16 -1.64 7.42 -25.92 -0.19 -1.83 16 25 C -0.15 -2.76 5.38 -27.32 -0.15 -2.91 16 26 C 0.18 4.44 4.67 -2.96 -0.01 4.42 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.05 0.95 7.99 -51.93 -0.41 0.53 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 33 H 0.05 0.60 8.04 -51.93 -0.42 0.18 16 34 H 0.39 3.64 8.60 -40.82 -0.35 3.29 16 35 H 0.09 0.61 7.84 -51.93 -0.41 0.20 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 1.39 7.67 -51.93 -0.40 0.99 16 38 H 0.11 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.11 0.94 7.89 -51.93 -0.41 0.53 16 42 H 0.05 1.04 7.85 -51.93 -0.41 0.63 16 43 H 0.04 0.78 7.32 -51.93 -0.38 0.40 16 44 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 45 H 0.08 2.20 6.33 -51.93 -0.33 1.88 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -32.82 361.18 -8.50 -41.32 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.18 Total: 1.74 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.85 Total: -0.45 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.05 Total: -50.98 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.08 Total: -4.42 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.82 -8.50 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052503455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.959 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds