Wall clock time and date at job start Tue Mar 31 2020 10:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48494 * 109.47457 * 240.00155 * 3 2 1 5 5 H 1.48496 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46765 * 120.00297 * 3 2 1 7 7 C 1.38813 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00333 * 160.40781 * 7 2 1 9 9 N 1.36933 * 120.00253 * 340.40207 * 7 2 1 10 10 C 1.50171 * 120.53546 * 336.70841 * 9 7 2 11 11 C 1.46242 * 107.53585 * 109.56387 * 10 9 7 12 12 C 1.52529 * 114.27188 * 58.40605 * 11 10 9 13 13 C 1.50120 * 105.41774 * 270.59444 * 12 11 10 14 14 H 1.08998 * 109.21479 * 337.38875 * 13 12 11 15 15 N 1.46500 * 109.21057 * 218.02831 * 13 12 11 16 16 C 1.34779 * 119.99758 * 154.72586 * 15 13 12 17 17 O 1.21279 * 120.00451 * 0.28064 * 16 15 13 18 18 C 1.50705 * 119.99779 * 180.27270 * 16 15 13 19 19 C 1.53004 * 109.47054 * 180.02562 * 18 16 15 20 20 C 1.53787 * 113.61144 * 274.14173 * 19 18 16 21 21 C 1.53958 * 87.01519 * 220.04786 * 20 19 18 22 22 F 1.39898 * 113.53747 * 270.81445 * 21 20 19 23 23 F 1.39902 * 113.66592 * 139.93199 * 21 20 19 24 24 C 1.53773 * 113.61320 * 176.53296 * 19 18 16 25 25 C 1.54844 * 110.81490 * 97.68576 * 13 12 11 26 26 C 1.43432 * 120.54065 * 156.68611 * 9 7 2 27 27 H 0.96993 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.84914 * 350.05635 * 10 9 7 29 29 H 1.09006 * 109.84761 * 229.07367 * 10 9 7 30 30 H 1.09000 * 108.52227 * 297.16983 * 11 10 9 31 31 H 1.08999 * 108.52309 * 179.64701 * 11 10 9 32 32 H 1.09004 * 110.24590 * 151.62720 * 12 11 10 33 33 H 1.08995 * 110.37251 * 29.63304 * 12 11 10 34 34 H 0.96992 * 120.00289 * 335.00105 * 15 13 12 35 35 H 1.08991 * 109.47466 * 300.00278 * 18 16 15 36 36 H 1.08997 * 109.46825 * 60.00648 * 18 16 15 37 37 H 1.08997 * 112.84538 * 45.33614 * 19 18 16 38 38 H 1.09001 * 113.61576 * 334.56413 * 20 19 18 39 39 H 1.09001 * 113.61520 * 105.47531 * 20 19 18 40 40 H 1.09002 * 113.61822 * 254.53224 * 24 19 18 41 41 H 1.09007 * 113.61750 * 25.34879 * 24 19 18 42 42 H 1.09002 * 109.36155 * 81.33388 * 25 13 12 43 43 H 1.08999 * 109.36153 * 200.92627 * 25 13 12 44 44 H 1.08993 * 108.15652 * 33.31119 * 26 9 7 45 45 H 1.09005 * 108.15672 * 150.08959 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3142 9 7 1.3852 -2.3539 0.3967 10 6 0.1863 -2.2990 1.2994 11 6 -0.9805 -2.6836 0.5062 12 6 -0.8828 -4.0706 -0.1210 13 6 -0.2324 -3.8594 -1.4574 14 1 -0.3827 -2.8261 -1.7701 15 7 -0.8482 -4.7546 -2.4400 16 6 -0.8295 -4.4336 -3.7489 17 8 -0.2984 -3.4061 -4.1138 18 6 -1.4683 -5.3515 -4.7591 19 6 -1.3077 -4.7584 -6.1603 20 6 -2.4125 -3.7564 -6.5354 21 6 -2.3927 -4.3839 -7.9412 22 9 -1.4808 -3.7768 -8.8112 23 9 -3.6636 -4.5382 -8.5052 24 6 -1.8537 -5.6624 -7.2780 25 6 1.2862 -4.1523 -1.3827 26 6 1.8645 -3.6322 -0.0430 27 1 -0.4850 0.8400 0.0004 28 1 0.0566 -1.2863 1.6813 29 1 0.3155 -2.9944 2.1289 30 1 -1.1140 -1.9519 -0.2906 31 1 -1.8606 -2.6553 1.1487 32 1 -1.8776 -4.4976 -0.2489 33 1 -0.2690 -4.7246 0.4982 34 1 -1.2728 -5.5764 -2.1483 35 1 -0.9844 -6.3274 -4.7204 36 1 -2.5282 -5.4621 -4.5302 37 1 -0.3001 -4.3889 -6.3506 38 1 -3.3477 -3.9166 -5.9989 39 1 -2.0844 -2.7172 -6.5155 40 1 -1.0753 -6.1597 -7.8568 41 1 -2.6349 -6.3457 -6.9447 42 1 1.4508 -5.2274 -1.4540 43 1 1.7912 -3.6557 -2.2112 44 1 2.9484 -3.5732 -0.1409 45 1 1.6348 -4.3655 0.7302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052503458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:02 Heat of formation + Delta-G solvation = -94.120543 kcal Electronic energy + Delta-G solvation = -27477.264942 eV Core-core repulsion = 23359.752982 eV Total energy + Delta-G solvation = -4117.511961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.94537 -47.28902 -39.87527 -38.33021 -37.28594 -34.57512 -32.32799 -31.56919 -30.67926 -29.27616 -26.46865 -26.12836 -24.17912 -23.65248 -22.56945 -20.52134 -20.11878 -19.67936 -19.09566 -17.57095 -16.90970 -16.76227 -16.64113 -16.33776 -15.50692 -15.43710 -14.91607 -14.57634 -14.16247 -14.00814 -13.80045 -13.68321 -13.57816 -13.35833 -13.18187 -12.77741 -12.52270 -12.42490 -12.23338 -11.86393 -11.49375 -11.40136 -11.33645 -11.23206 -11.06145 -10.75347 -10.61170 -10.57032 -10.37438 -10.21877 -10.03471 -9.75412 -9.49474 -9.35820 -9.34308 -8.56153 -8.33762 -6.68403 -5.75240 -3.13862 2.95433 3.29265 3.43650 3.44620 3.49058 3.50667 3.63744 4.08427 4.15040 4.24295 4.55873 4.86195 5.01024 5.15791 5.18548 5.24994 5.33448 5.39394 5.41242 5.48040 5.56322 5.60571 5.67526 5.75917 5.89031 6.02412 6.08490 6.27129 6.31155 6.41398 6.48993 6.71519 6.88798 6.91023 6.94626 7.03908 7.15676 7.22926 7.60079 7.77869 7.89443 7.98888 8.46732 8.60146 9.23147 9.90571 10.42723 11.32595 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.003204 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.155625 B = 8736.693411 C = 9649.265754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.155 3.845 14 H 0.102 0.898 15 N -0.730 5.730 16 C 0.503 3.497 17 O -0.529 6.529 18 C -0.130 4.130 19 C -0.086 4.086 20 C -0.158 4.158 21 C 0.251 3.749 22 F -0.180 7.180 23 F -0.195 7.195 24 C -0.162 4.162 25 C -0.150 4.150 26 C 0.162 3.838 27 H 0.253 0.747 28 H 0.090 0.910 29 H 0.006 0.994 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.390 0.610 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.033 0.967 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 -15.045 -8.490 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.120 0.880 15 N -0.381 5.381 16 C 0.288 3.712 17 O -0.405 6.405 18 C -0.170 4.170 19 C -0.105 4.105 20 C -0.196 4.196 21 C 0.215 3.785 22 F -0.161 7.161 23 F -0.175 7.175 24 C -0.200 4.200 25 C -0.193 4.193 26 C 0.032 3.968 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.024 0.976 30 H 0.121 0.879 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.223 0.777 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.684 -14.090 -8.771 17.893 hybrid contribution 0.068 0.460 -0.283 0.544 sum -6.616 -13.631 -9.054 17.651 Atomic orbital electron populations 1.69940 1.05085 1.25324 1.54190 1.24868 0.95215 0.98175 1.01082 0.86400 0.79000 0.83594 0.78002 1.21023 1.21739 1.21233 1.19164 0.93666 0.85329 1.39818 0.91553 1.44255 1.33720 1.00896 1.52044 1.20165 0.85279 1.00538 0.89891 1.20931 0.98416 0.95055 1.02426 1.21355 0.98647 0.99704 0.96161 1.21253 0.92052 0.94976 0.86512 0.88044 1.46544 1.59013 1.25520 1.06984 1.20490 0.80268 0.86970 0.83452 1.90768 1.44436 1.25773 1.79545 1.21619 1.02515 0.99637 0.93198 1.22142 1.00506 0.95060 0.92806 1.24197 1.01208 1.02621 0.91563 1.22183 0.73939 0.96813 0.85610 1.93022 1.66164 1.84593 1.72279 1.92997 1.40621 1.96130 1.87801 1.24181 1.02436 0.96098 0.97258 1.23295 0.95425 0.98379 1.02159 1.20353 0.96360 0.88196 0.91888 0.93729 0.89147 0.97609 0.87909 0.95250 0.92943 0.91959 0.77706 0.88514 0.88784 0.86771 0.87225 0.88271 0.88795 0.86992 0.93810 0.92587 0.94874 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 9.43 55.49 0.52 -24.51 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 21.89 29.60 -169.99 -5.03 16.86 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.81 9.63 -15.06 -0.14 -6.96 16 8 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 9 N -0.59 -14.27 2.60 -175.07 -0.46 -14.72 16 10 C 0.16 3.75 5.25 -5.20 -0.03 3.72 16 11 C -0.13 -2.67 5.02 -30.18 -0.15 -2.82 16 12 C -0.12 -2.04 5.33 -28.40 -0.15 -2.19 16 13 C 0.15 2.85 2.22 -68.39 -0.15 2.70 16 14 H 0.10 2.45 6.26 -51.93 -0.33 2.12 16 15 N -0.73 -10.29 4.97 -54.25 -0.27 -10.56 16 16 C 0.50 7.42 7.78 -10.98 -0.09 7.33 16 17 O -0.53 -10.62 15.45 5.56 0.09 -10.54 16 18 C -0.13 -1.19 5.52 -27.88 -0.15 -1.34 16 19 C -0.09 -0.87 3.09 -89.81 -0.28 -1.14 16 20 C -0.16 -1.67 7.43 -25.82 -0.19 -1.87 16 21 C 0.25 2.67 3.28 -25.82 -0.08 2.58 16 22 F -0.18 -2.28 17.38 2.25 0.04 -2.24 16 23 F -0.19 -2.24 17.41 2.25 0.04 -2.20 16 24 C -0.16 -1.26 7.43 -25.92 -0.19 -1.45 16 25 C -0.15 -2.86 5.98 -24.76 -0.15 -3.01 16 26 C 0.16 3.35 5.18 -4.66 -0.02 3.33 16 27 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 2.31 6.05 -51.93 -0.31 2.00 16 29 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 30 H 0.10 2.53 5.29 -51.93 -0.27 2.26 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 33 H 0.06 1.01 6.29 -51.93 -0.33 0.69 16 34 H 0.39 4.02 8.48 -40.82 -0.35 3.68 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.66 7.88 -51.93 -0.41 0.25 16 37 H 0.11 1.39 7.73 -51.93 -0.40 0.98 16 38 H 0.11 0.99 7.92 -51.93 -0.41 0.57 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.64 8.10 -51.92 -0.42 0.22 16 42 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 45 H 0.03 0.52 6.88 -51.93 -0.36 0.17 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -31.19 356.08 -8.49 -39.68 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.91 Total: 3.97 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.87 Total: -1.10 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.20 Total: -49.79 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.19 -8.49 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052503458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.440 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds