Wall clock time and date at job start Tue Mar 31 2020 10:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48494 * 109.47457 * 240.00155 * 3 2 1 5 5 H 1.48496 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46765 * 120.00297 * 3 2 1 7 7 C 1.38813 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00333 * 160.40781 * 7 2 1 9 9 N 1.36933 * 120.00253 * 340.40207 * 7 2 1 10 10 C 1.50171 * 120.53546 * 336.70841 * 9 7 2 11 11 C 1.46242 * 107.53585 * 109.56387 * 10 9 7 12 12 C 1.52529 * 114.27188 * 58.40605 * 11 10 9 13 13 C 1.50120 * 105.41774 * 270.59444 * 12 11 10 14 14 H 1.08998 * 109.21479 * 337.38875 * 13 12 11 15 15 N 1.46500 * 109.21057 * 218.02831 * 13 12 11 16 16 C 1.34779 * 119.99758 * 154.72586 * 15 13 12 17 17 O 1.21279 * 120.00451 * 0.28064 * 16 15 13 18 18 C 1.50705 * 119.99779 * 180.27270 * 16 15 13 19 19 C 1.53004 * 109.47054 * 180.02562 * 18 16 15 20 20 C 1.53787 * 113.61144 * 274.14173 * 19 18 16 21 21 C 1.53958 * 87.01519 * 220.04786 * 20 19 18 22 22 F 1.39898 * 113.53747 * 270.81445 * 21 20 19 23 23 F 1.39902 * 113.66592 * 139.93199 * 21 20 19 24 24 C 1.53773 * 113.61320 * 176.53296 * 19 18 16 25 25 C 1.54844 * 110.81490 * 97.68576 * 13 12 11 26 26 C 1.43432 * 120.54065 * 156.68611 * 9 7 2 27 27 H 0.96993 * 120.00094 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.84914 * 350.05635 * 10 9 7 29 29 H 1.09006 * 109.84761 * 229.07367 * 10 9 7 30 30 H 1.09000 * 108.52227 * 297.16983 * 11 10 9 31 31 H 1.08999 * 108.52309 * 179.64701 * 11 10 9 32 32 H 1.09004 * 110.24590 * 151.62720 * 12 11 10 33 33 H 1.08995 * 110.37251 * 29.63304 * 12 11 10 34 34 H 0.96992 * 120.00289 * 335.00105 * 15 13 12 35 35 H 1.08991 * 109.47466 * 300.00278 * 18 16 15 36 36 H 1.08997 * 109.46825 * 60.00648 * 18 16 15 37 37 H 1.08997 * 112.84538 * 45.33614 * 19 18 16 38 38 H 1.09001 * 113.61576 * 334.56413 * 20 19 18 39 39 H 1.09001 * 113.61520 * 105.47531 * 20 19 18 40 40 H 1.09002 * 113.61822 * 254.53224 * 24 19 18 41 41 H 1.09007 * 113.61750 * 25.34879 * 24 19 18 42 42 H 1.09002 * 109.36155 * 81.33388 * 25 13 12 43 43 H 1.08999 * 109.36153 * 200.92627 * 25 13 12 44 44 H 1.08993 * 108.15652 * 33.31119 * 26 9 7 45 45 H 1.09005 * 108.15672 * 150.08959 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3142 9 7 1.3852 -2.3539 0.3967 10 6 0.1863 -2.2990 1.2994 11 6 -0.9805 -2.6836 0.5062 12 6 -0.8828 -4.0706 -0.1210 13 6 -0.2324 -3.8594 -1.4574 14 1 -0.3827 -2.8261 -1.7701 15 7 -0.8482 -4.7546 -2.4400 16 6 -0.8295 -4.4336 -3.7489 17 8 -0.2984 -3.4061 -4.1138 18 6 -1.4683 -5.3515 -4.7591 19 6 -1.3077 -4.7584 -6.1603 20 6 -2.4125 -3.7564 -6.5354 21 6 -2.3927 -4.3839 -7.9412 22 9 -1.4808 -3.7768 -8.8112 23 9 -3.6636 -4.5382 -8.5052 24 6 -1.8537 -5.6624 -7.2780 25 6 1.2862 -4.1523 -1.3827 26 6 1.8645 -3.6322 -0.0430 27 1 -0.4850 0.8400 0.0004 28 1 0.0566 -1.2863 1.6813 29 1 0.3155 -2.9944 2.1289 30 1 -1.1140 -1.9519 -0.2906 31 1 -1.8606 -2.6553 1.1487 32 1 -1.8776 -4.4976 -0.2489 33 1 -0.2690 -4.7246 0.4982 34 1 -1.2728 -5.5764 -2.1483 35 1 -0.9844 -6.3274 -4.7204 36 1 -2.5282 -5.4621 -4.5302 37 1 -0.3001 -4.3889 -6.3506 38 1 -3.3477 -3.9166 -5.9989 39 1 -2.0844 -2.7172 -6.5155 40 1 -1.0753 -6.1597 -7.8568 41 1 -2.6349 -6.3457 -6.9447 42 1 1.4508 -5.2274 -1.4540 43 1 1.7912 -3.6557 -2.2112 44 1 2.9484 -3.5732 -0.1409 45 1 1.6348 -4.3655 0.7302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052503458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:02 Heat of formation + Delta-G solvation = -113.553517 kcal Electronic energy + Delta-G solvation = -27478.107619 eV Core-core repulsion = 23359.752982 eV Total energy + Delta-G solvation = -4118.354638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.82425 -48.18048 -41.07488 -39.58665 -38.50937 -36.16193 -34.00255 -33.29891 -32.08601 -30.50273 -27.90311 -27.18736 -25.73674 -25.10650 -23.87636 -21.97286 -21.26432 -20.78587 -20.65834 -18.60536 -18.44152 -17.97410 -17.54277 -17.22422 -16.95686 -16.89345 -16.33675 -16.03716 -15.61338 -15.29393 -15.05699 -15.00447 -14.79637 -14.49580 -14.27742 -13.99595 -13.89568 -13.51361 -13.46353 -13.36973 -13.22315 -13.05685 -12.66629 -12.40470 -12.27773 -12.13438 -12.08008 -11.92528 -11.81369 -11.70611 -11.53251 -11.37540 -11.18671 -11.10665 -10.64030 -10.43470 -9.84506 -8.63233 -7.83244 -5.22774 1.45644 1.45889 1.52641 1.82735 2.35790 2.53082 2.53788 2.85893 3.27646 3.29884 3.39212 3.44743 3.64302 3.94257 4.07679 4.15691 4.25151 4.37855 4.44320 4.52695 4.53197 4.58459 4.66663 4.68919 4.75394 4.79249 4.85423 4.90085 4.91737 4.93466 5.11179 5.20459 5.31206 5.31757 5.37130 5.48716 5.53867 5.66993 5.75211 5.84181 6.22255 6.42989 6.78975 7.19847 7.52235 7.93912 8.41180 9.20651 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.003204 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.155625 B = 8736.693411 C = 9649.265754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.041 4.041 3 Si 0.953 3.047 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.264 4.264 8 H 0.056 0.944 9 N -0.603 5.603 10 C 0.166 3.834 11 C -0.124 4.124 12 C -0.105 4.105 13 C 0.167 3.833 14 H 0.035 0.965 15 N -0.716 5.716 16 C 0.494 3.506 17 O -0.594 6.594 18 C -0.113 4.113 19 C -0.091 4.091 20 C -0.165 4.165 21 C 0.236 3.764 22 F -0.199 7.199 23 F -0.200 7.200 24 C -0.133 4.133 25 C -0.139 4.139 26 C 0.155 3.845 27 H 0.246 0.754 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.416 0.584 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.147 0.853 42 H 0.082 0.918 43 H 0.014 0.986 44 H 0.024 0.976 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.207 -18.950 -7.991 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.237 4.237 3 Si 0.782 3.218 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.394 4.394 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.043 3.957 11 C -0.163 4.163 12 C -0.143 4.143 13 C 0.063 3.937 14 H 0.054 0.946 15 N -0.368 5.368 16 C 0.283 3.717 17 O -0.475 6.475 18 C -0.153 4.153 19 C -0.110 4.110 20 C -0.203 4.203 21 C 0.200 3.800 22 F -0.180 7.180 23 F -0.181 7.181 24 C -0.171 4.171 25 C -0.181 4.181 26 C 0.027 3.973 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.253 0.747 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.165 0.835 42 H 0.100 0.900 43 H 0.033 0.967 44 H 0.042 0.958 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.937 -18.062 -8.258 21.387 hybrid contribution 0.470 1.702 -0.447 1.822 sum -7.467 -16.359 -8.704 19.979 Atomic orbital electron populations 1.70123 1.05829 1.25095 1.54980 1.25483 0.96001 1.00592 1.01661 0.85564 0.77837 0.80495 0.77858 1.21410 1.21957 1.20378 1.19345 0.93548 0.86989 1.39566 0.92600 1.44415 1.34136 1.01269 1.52639 1.20130 0.85660 0.99267 0.90650 1.20744 0.98072 0.96432 1.01029 1.21253 1.00843 0.97583 0.94611 1.20704 0.92125 0.92585 0.88318 0.94646 1.46283 1.58512 1.25726 1.06289 1.21595 0.79166 0.86773 0.84216 1.90762 1.47248 1.28922 1.80527 1.21658 1.04340 0.99254 0.90014 1.22051 0.98697 0.95717 0.94557 1.24306 1.02464 1.01177 0.92341 1.22588 0.73658 0.98760 0.85006 1.92981 1.66831 1.85239 1.72914 1.92983 1.40984 1.96211 1.87892 1.24133 1.03189 0.94683 0.95052 1.23149 0.95539 0.99991 0.99447 1.20503 0.95877 0.87432 0.93531 0.94515 0.92757 0.94909 0.92433 0.93699 0.89438 0.89940 0.74683 0.84647 0.85165 0.89887 0.85159 0.91502 0.87499 0.83480 0.89968 0.96740 0.95780 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.24 9.43 21.65 0.20 -53.03 16 2 C -0.04 -2.34 4.91 84.86 0.42 -1.92 16 3 Si 0.95 46.61 29.60 68.60 2.03 48.64 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.26 -14.90 9.63 84.03 0.81 -14.09 16 8 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 9 N -0.60 -29.66 2.60 -707.81 -1.84 -31.50 16 10 C 0.17 7.54 5.25 83.58 0.44 7.98 16 11 C -0.12 -5.05 5.02 28.36 0.14 -4.91 16 12 C -0.11 -3.25 5.33 29.51 0.16 -3.09 16 13 C 0.17 6.03 2.22 44.69 0.10 6.13 16 14 H 0.04 1.79 6.26 -2.39 -0.01 1.78 16 15 N -0.72 -18.34 4.97 -443.95 -2.21 -20.55 16 16 C 0.49 13.96 7.78 87.66 0.68 14.65 16 17 O -0.59 -25.00 15.45 -3.03 -0.05 -25.05 16 18 C -0.11 -1.65 5.52 29.85 0.16 -1.48 16 19 C -0.09 -1.68 3.09 -10.27 -0.03 -1.71 16 20 C -0.16 -3.44 7.43 31.18 0.23 -3.20 16 21 C 0.24 4.78 3.28 31.18 0.10 4.88 16 22 F -0.20 -5.15 17.38 44.97 0.78 -4.37 16 23 F -0.20 -4.31 17.41 44.97 0.78 -3.53 16 24 C -0.13 -1.62 7.43 31.12 0.23 -1.39 16 25 C -0.14 -5.21 5.98 31.87 0.19 -5.02 16 26 C 0.16 6.29 5.18 87.60 0.45 6.75 16 27 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.05 2.85 6.05 -2.39 -0.01 2.84 16 29 H 0.03 1.30 8.12 -2.38 -0.02 1.28 16 30 H 0.06 2.94 5.29 -2.39 -0.01 2.93 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.12 7.85 -2.38 -0.02 2.10 16 33 H 0.08 2.28 6.29 -2.39 -0.02 2.26 16 34 H 0.42 6.48 8.48 -92.71 -0.79 5.70 16 35 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.13 1.06 7.88 -2.39 -0.02 1.04 16 37 H 0.08 2.08 7.73 -2.39 -0.02 2.06 16 38 H 0.13 2.10 7.92 -2.39 -0.02 2.08 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.15 0.83 8.10 -2.38 -0.02 0.81 16 42 H 0.08 2.42 8.13 -2.39 -0.02 2.40 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.02 1.00 7.99 -2.39 -0.02 0.98 16 45 H 0.06 2.05 6.88 -2.38 -0.02 2.03 16 Total: -1.00 -76.35 356.08 4.01 -72.34 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.22 Total: 13.49 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.09 Total: 3.56 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.85 Total: -105.08 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 1.56 Total: -7.90 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -76.35 4.01 -72.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052503458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.210 kcal (2) G-P(sol) polarization free energy of solvation -76.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds