Wall clock time and date at job start Tue Mar 31 2020 11:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 112.84942 * 2 1 4 4 O 1.21282 * 120.00084 * 228.80614 * 3 2 1 5 5 N 1.34780 * 120.00183 * 48.80472 * 3 2 1 6 6 C 1.46497 * 120.00296 * 179.97438 * 5 3 2 7 7 H 1.08998 * 108.44971 * 327.31746 * 6 5 3 8 8 C 1.52566 * 108.51217 * 209.77021 * 6 5 3 9 9 C 1.50887 * 109.35682 * 153.73686 * 8 6 5 10 10 C 1.54296 * 110.23551 * 91.79835 * 9 8 6 11 11 N 1.47609 * 111.93994 * 319.69821 * 10 9 8 12 12 C 1.36938 * 118.64087 * 137.78219 * 11 10 9 13 13 H 1.08003 * 120.00042 * 207.41798 * 12 11 10 14 14 C 1.38818 * 120.00037 * 27.41453 * 12 11 10 15 15 N 1.31611 * 119.99878 * 16.08903 * 14 12 11 16 16 Si 1.86795 * 119.99805 * 195.81406 * 14 12 11 17 17 H 1.48501 * 109.47440 * 89.99968 * 16 14 12 18 18 H 1.48500 * 109.47390 * 209.99889 * 16 14 12 19 19 H 1.48500 * 109.47421 * 330.00028 * 16 14 12 20 20 C 1.44575 * 122.71569 * 317.49671 * 11 10 9 21 21 C 1.47093 * 108.50871 * 85.00349 * 6 5 3 22 22 C 1.53783 * 113.69489 * 131.27333 * 2 1 3 23 23 C 1.53779 * 87.08193 * 89.12155 * 22 2 1 24 24 F 1.39892 * 113.61650 * 270.88492 * 23 22 2 25 25 F 1.39904 * 113.68492 * 139.99119 * 23 22 2 26 26 C 1.53780 * 113.61170 * 228.80839 * 2 1 3 27 27 H 1.08996 * 109.47665 * 69.66223 * 1 2 3 28 28 H 1.09001 * 109.47020 * 189.66994 * 1 2 3 29 29 H 1.09006 * 109.47173 * 309.65990 * 1 2 3 30 30 H 0.96997 * 119.99650 * 0.02562 * 5 3 2 31 31 H 1.08999 * 109.49032 * 273.69659 * 8 6 5 32 32 H 1.08995 * 109.49144 * 33.75113 * 8 6 5 33 33 H 1.08998 * 109.36397 * 212.07589 * 9 8 6 34 34 H 1.08998 * 109.36838 * 331.69539 * 9 8 6 35 35 H 1.09002 * 109.13865 * 199.01785 * 10 9 8 36 36 H 1.08993 * 108.96357 * 80.26469 * 10 9 8 37 37 H 0.97002 * 119.99651 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.45362 * 211.02501 * 20 11 10 39 39 H 1.08990 * 109.44985 * 330.95059 * 20 11 10 40 40 H 1.08997 * 109.33097 * 63.79791 * 21 6 5 41 41 H 1.09004 * 109.18942 * 304.22682 * 21 6 5 42 42 H 1.09003 * 113.61356 * 203.67605 * 22 2 1 43 43 H 1.08997 * 113.60886 * 334.57402 * 22 2 1 44 44 H 1.09005 * 113.61786 * 25.34181 * 26 2 1 45 45 H 1.08998 * 113.61830 * 156.16416 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9881 1.6789 -0.7904 5 7 1.6684 2.3083 0.8783 6 6 2.2377 3.6581 0.8787 7 1 3.2870 3.5901 0.5919 8 6 2.1614 4.2156 2.2968 9 6 3.2498 5.2427 2.4896 10 6 2.7220 6.6508 2.1441 11 7 1.8529 6.6367 0.9511 12 6 0.7053 7.3836 0.9662 13 1 -0.1406 7.0862 0.3641 14 6 0.6290 8.5231 1.7554 15 7 1.7278 9.0660 2.2351 16 14 -1.0324 9.2902 2.1302 17 1 -1.5839 8.6938 3.3733 18 1 -0.8714 10.7550 2.3132 19 1 -1.9629 9.0315 1.0021 20 6 2.1662 5.8715 -0.2349 21 6 1.5297 4.4637 -0.1280 22 6 2.1480 -0.9289 1.0584 23 6 2.0950 -2.0420 -0.0014 24 9 0.8943 -2.7599 -0.0005 25 9 3.2229 -2.8697 -0.0040 26 6 2.1459 -0.9280 -1.0603 27 1 -0.3634 0.3571 -0.9635 28 1 -0.3633 -1.0131 0.1726 29 1 -0.3634 0.6559 0.7912 30 1 0.9705 2.0761 1.5106 31 1 1.1889 4.6828 2.4521 32 1 2.2944 3.4054 3.0137 33 1 3.5827 5.2260 3.5274 34 1 4.0908 5.0049 1.8383 35 1 3.5672 7.3136 1.9584 36 1 2.1535 7.0338 2.9915 37 1 1.6745 9.8620 2.7869 38 1 1.7703 6.3832 -1.1121 39 1 3.2477 5.7747 -0.3290 40 1 0.4830 4.5620 0.1596 41 1 1.5929 3.9649 -1.0951 42 1 3.1610 -0.6487 1.3471 43 1 1.4974 -1.1094 1.9141 44 1 1.4938 -1.1079 -1.9150 45 1 3.1579 -0.6468 -1.3519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052855779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:01 Heat of formation + Delta-G solvation = -97.585140 kcal Electronic energy + Delta-G solvation = -27761.566120 eV Core-core repulsion = 23643.903923 eV Total energy + Delta-G solvation = -4117.662197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.15910 -47.46990 -40.64670 -38.45493 -37.00165 -34.86271 -32.56103 -31.64092 -30.41279 -29.22640 -26.70759 -26.15478 -24.90149 -23.90030 -23.14931 -21.37698 -20.21993 -19.44270 -18.98980 -18.25704 -17.11750 -16.82952 -16.63425 -16.14523 -15.84218 -15.18134 -14.94089 -14.42878 -14.33362 -14.13626 -13.98752 -13.83327 -13.75387 -13.55834 -13.38077 -12.83779 -12.76088 -12.58771 -12.49860 -12.07966 -11.99792 -11.58185 -11.44580 -11.36284 -11.24173 -10.86489 -10.79879 -10.73838 -10.47678 -10.28751 -10.13999 -9.93821 -9.78384 -9.64990 -9.55923 -8.88240 -8.41869 -6.66618 -5.79390 -3.24060 2.52752 3.02323 3.22243 3.35148 3.42828 3.43710 3.44222 3.84955 3.87688 4.11682 4.48591 4.65037 4.73633 4.97086 5.08979 5.11788 5.17302 5.30625 5.32952 5.43108 5.44803 5.48042 5.59114 5.65653 5.70046 5.82958 5.98994 6.02826 6.16471 6.29262 6.43925 6.47156 6.61187 6.72799 6.77738 6.81188 6.89027 7.02301 7.40219 7.58679 7.68451 7.81564 8.24630 8.46644 9.23253 9.89895 10.35831 11.27811 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.002903 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.271333 B = 9641.841095 C = 9974.954601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.530 3.470 4 O -0.537 6.537 5 N -0.721 5.721 6 C 0.160 3.840 7 H 0.075 0.925 8 C -0.111 4.111 9 C -0.141 4.141 10 C 0.178 3.822 11 N -0.590 5.590 12 C -0.259 4.259 13 H 0.064 0.936 14 C 0.005 3.995 15 N -0.903 5.903 16 Si 0.900 3.100 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.162 3.838 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.256 3.744 24 F -0.177 7.177 25 F -0.188 7.188 26 C -0.139 4.139 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.396 0.604 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.253 0.747 38 H 0.048 0.952 39 H 0.033 0.967 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 -20.373 -0.981 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C 0.315 3.685 4 O -0.414 6.414 5 N -0.370 5.370 6 C 0.057 3.943 7 H 0.093 0.907 8 C -0.149 4.149 9 C -0.180 4.180 10 C 0.053 3.947 11 N -0.311 5.311 12 C -0.389 4.389 13 H 0.082 0.918 14 C -0.193 4.193 15 N -0.547 5.547 16 Si 0.730 3.270 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 C 0.033 3.967 21 C -0.195 4.195 22 C -0.186 4.186 23 C 0.220 3.780 24 F -0.158 7.158 25 F -0.169 7.169 26 C -0.177 4.177 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.061 -20.013 -1.447 20.065 hybrid contribution -1.263 0.102 0.602 1.403 sum -1.202 -19.910 -0.845 19.965 Atomic orbital electron populations 1.21772 0.90232 1.03909 1.03666 1.21887 0.97878 0.93134 0.97943 1.19823 0.82348 0.85415 0.80923 1.90709 1.31307 1.80344 1.39006 1.46485 1.41073 1.12781 1.36694 1.20077 0.98339 0.79331 0.96531 0.90717 1.21238 1.02180 0.97790 0.93717 1.22030 0.97191 0.98636 1.00166 1.21072 0.93817 0.89564 0.90232 1.43678 1.24980 1.52285 1.10203 1.19201 0.90953 1.02967 1.25779 0.91777 1.25050 0.96639 0.95997 1.01647 1.70068 1.25514 1.21433 1.37674 0.86336 0.84031 0.78299 0.78352 1.21519 1.21812 1.20476 1.20565 0.96351 0.89321 0.90425 1.21862 1.01099 0.99201 0.97325 1.24117 1.04823 0.92116 0.97506 1.21960 0.71749 0.83137 1.01189 1.92992 1.45032 1.80502 1.97261 1.93022 1.50917 1.75742 1.97237 1.24071 1.05694 0.90827 0.97128 0.90898 0.90378 0.91126 0.77002 0.90068 0.93192 0.92560 0.93411 0.95604 0.90938 0.93683 0.93323 0.94824 0.91923 0.92961 0.86507 0.87931 0.88297 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.95 37.16 0.33 -0.73 16 2 C -0.10 -0.97 1.26 -154.85 -0.19 -1.17 16 3 C 0.53 6.80 6.77 -10.99 -0.07 6.73 16 4 O -0.54 -8.96 15.39 5.56 0.09 -8.87 16 5 N -0.72 -8.97 4.77 -56.82 -0.27 -9.24 16 6 C 0.16 2.51 1.96 -70.99 -0.14 2.37 16 7 H 0.07 1.31 6.65 -51.93 -0.35 0.96 16 8 C -0.11 -1.76 5.00 -28.01 -0.14 -1.90 16 9 C -0.14 -2.50 5.71 -27.11 -0.15 -2.65 16 10 C 0.18 4.06 4.70 -2.76 -0.01 4.04 16 11 N -0.59 -14.01 2.26 -171.87 -0.39 -14.40 16 12 C -0.26 -6.81 9.43 -15.06 -0.14 -6.95 16 13 H 0.06 1.67 7.88 -52.48 -0.41 1.26 16 14 C 0.01 0.15 4.85 -17.43 -0.08 0.06 16 15 N -0.90 -25.52 11.11 55.49 0.62 -24.90 16 16 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 C 0.16 3.36 5.65 -4.08 -0.02 3.34 16 21 C -0.15 -2.70 5.20 -28.58 -0.15 -2.85 16 22 C -0.15 -1.18 7.00 -25.92 -0.18 -1.36 16 23 C 0.26 2.35 3.26 -25.92 -0.08 2.27 16 24 F -0.18 -1.70 15.52 2.25 0.03 -1.67 16 25 F -0.19 -2.03 17.41 2.25 0.04 -1.99 16 26 C -0.14 -1.29 6.78 -25.92 -0.18 -1.47 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.55 6.20 -51.93 -0.32 0.22 16 29 H 0.07 0.48 7.04 -51.93 -0.37 0.11 16 30 H 0.40 3.95 7.52 -40.82 -0.31 3.64 16 31 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 32 H 0.05 0.67 8.05 -51.93 -0.42 0.25 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16 35 H 0.03 0.65 8.02 -51.93 -0.42 0.23 16 36 H 0.07 1.84 6.42 -51.93 -0.33 1.50 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.05 1.04 7.99 -51.93 -0.41 0.62 16 39 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.92 7.93 -51.93 -0.41 0.51 16 42 H 0.12 0.95 8.09 -51.93 -0.42 0.53 16 43 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.13 1.30 7.43 -51.93 -0.39 0.91 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -29.93 354.89 -7.77 -37.70 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.99 Total: 2.17 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.22 Total: -0.27 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.04 Total: -48.54 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.93 -7.77 -37.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052855779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.884 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds