Wall clock time and date at job start Tue Mar 31 2020 11:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 112.84972 * 2 1 4 4 O 1.21280 * 119.99982 * 129.66377 * 3 2 1 5 5 N 1.34781 * 120.00205 * 309.66986 * 3 2 1 6 6 C 1.46499 * 119.99843 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.20624 * 35.63695 * 6 5 3 8 8 C 1.50130 * 109.20379 * 154.99964 * 6 5 3 9 9 C 1.52525 * 105.41287 * 218.02406 * 8 6 5 10 10 C 1.46241 * 114.27771 * 270.59529 * 9 8 6 11 11 N 1.50170 * 107.53215 * 58.41155 * 10 9 8 12 12 C 1.36939 * 120.53946 * 109.56644 * 11 10 9 13 13 H 1.07998 * 119.99653 * 211.16631 * 12 11 10 14 14 C 1.38810 * 119.99963 * 31.16237 * 12 11 10 15 15 N 1.31616 * 120.00103 * 19.52711 * 14 12 11 16 16 Si 1.86805 * 119.99920 * 199.51963 * 14 12 11 17 17 H 1.48505 * 109.46733 * 94.74537 * 16 14 12 18 18 H 1.48498 * 109.47004 * 214.74501 * 16 14 12 19 19 H 1.48490 * 109.47259 * 334.74587 * 16 14 12 20 20 C 1.43436 * 118.92174 * 289.58329 * 11 10 9 21 21 C 1.54846 * 109.20950 * 276.32074 * 6 5 3 22 22 C 1.53780 * 113.60924 * 228.80672 * 2 1 3 23 23 C 1.53963 * 87.01566 * 220.04752 * 22 2 1 24 24 F 1.39901 * 113.53518 * 270.81319 * 23 22 2 25 25 F 1.39894 * 113.73941 * 139.94570 * 23 22 2 26 26 C 1.53775 * 113.61108 * 131.19953 * 2 1 3 27 27 H 1.08999 * 109.47348 * 50.32798 * 1 2 3 28 28 H 1.09005 * 109.46865 * 290.33074 * 1 2 3 29 29 H 1.08999 * 109.47322 * 170.33354 * 1 2 3 30 30 H 0.96999 * 119.99417 * 0.02562 * 5 3 2 31 31 H 1.08989 * 110.25171 * 336.99757 * 8 6 5 32 32 H 1.09005 * 110.24475 * 98.91155 * 8 6 5 33 33 H 1.09002 * 108.52518 * 31.83906 * 9 8 6 34 34 H 1.09000 * 108.52428 * 149.35830 * 9 8 6 35 35 H 1.09003 * 109.84308 * 177.91690 * 10 9 8 36 36 H 1.08993 * 109.84904 * 298.89818 * 10 9 8 37 37 H 0.96997 * 120.00095 * 179.97438 * 15 14 12 38 38 H 1.09000 * 108.15937 * 213.28610 * 20 11 10 39 39 H 1.08992 * 108.15877 * 330.06638 * 20 11 10 40 40 H 1.09001 * 109.35538 * 321.00180 * 21 6 5 41 41 H 1.08999 * 109.35389 * 80.58152 * 21 6 5 42 42 H 1.08998 * 113.61814 * 334.56696 * 22 2 1 43 43 H 1.08997 * 113.61213 * 105.47151 * 22 2 1 44 44 H 1.09006 * 113.61282 * 254.52407 * 26 2 1 45 45 H 1.08996 * 113.61993 * 25.43073 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1153 1.3887 0.0000 4 8 2.9685 1.6872 0.8085 5 7 1.6903 2.2991 -0.8984 6 6 2.2589 3.6493 -0.8980 7 1 3.3155 3.5933 -0.6366 8 6 2.1200 4.2440 -2.2695 9 6 3.4035 5.0352 -2.5001 10 6 3.3416 6.4256 -2.0512 11 7 3.0211 6.4135 -0.5841 12 6 3.9671 6.7746 0.3378 13 1 3.9634 6.3250 1.3197 14 6 4.9307 7.7185 0.0102 15 7 4.7324 8.5380 -1.0005 16 14 6.5088 7.8259 1.0039 17 1 7.5680 7.0251 0.3388 18 1 6.9423 9.2434 1.0930 19 1 6.2708 7.2943 2.3699 20 6 1.7081 6.0172 -0.1642 21 6 1.5199 4.5129 0.1536 22 6 2.1460 -0.9280 -1.0603 23 6 3.1923 -1.3136 0.0012 24 9 4.3202 -0.4859 0.0004 25 9 3.5171 -2.6744 0.0036 26 6 2.1460 -0.9281 1.0602 27 1 -0.3634 0.6560 -0.7910 28 1 -0.3633 0.3571 0.9637 29 1 -0.3634 -1.0130 -0.1726 30 1 1.0076 2.0605 -1.5448 31 1 2.0243 3.4548 -3.0150 32 1 1.2545 4.9055 -2.3080 33 1 4.2170 4.5370 -1.9726 34 1 3.6295 5.0254 -3.5663 35 1 4.3037 6.9108 -2.2158 36 1 2.5608 6.9560 -2.5962 37 1 5.4056 9.1978 -1.2292 38 1 1.4501 6.5877 0.7281 39 1 1.0041 6.2857 -0.9517 40 1 0.4574 4.2704 0.1381 41 1 1.9227 4.2995 1.1437 42 1 1.4944 -1.7522 -1.3508 43 1 2.5649 -0.3969 -1.9150 44 1 2.5651 -0.3970 1.9149 45 1 1.4945 -1.7523 1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052855780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:05 Heat of formation + Delta-G solvation = -90.637987 kcal Electronic energy + Delta-G solvation = -28263.192480 eV Core-core repulsion = 24145.831535 eV Total energy + Delta-G solvation = -4117.360946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.88095 -47.20468 -40.54816 -38.39245 -36.88820 -34.72883 -32.57689 -31.56247 -30.43384 -29.40298 -26.63110 -26.20909 -24.56505 -23.91597 -22.88001 -21.58324 -20.35586 -19.23090 -19.06224 -17.57107 -16.91384 -16.70006 -16.59765 -16.41611 -15.74535 -15.13240 -14.69448 -14.58587 -14.12545 -14.00564 -13.86103 -13.63572 -13.44632 -13.37365 -13.21530 -12.88266 -12.75679 -12.67777 -12.47040 -12.28571 -11.93037 -11.56895 -11.28390 -11.18349 -11.15995 -10.87953 -10.75293 -10.65673 -10.52910 -10.36009 -10.14747 -9.80312 -9.65237 -9.55043 -9.42543 -8.72184 -8.39363 -6.60466 -5.76497 -3.21551 2.63776 3.17643 3.27501 3.42721 3.49948 3.53261 3.55877 3.94009 3.99858 4.20642 4.54838 4.68452 4.90060 5.00749 5.05873 5.15612 5.19554 5.32559 5.35436 5.43540 5.45899 5.54458 5.57917 5.66244 5.69793 5.79257 5.91354 6.07387 6.16541 6.26358 6.38813 6.55747 6.59752 6.75420 6.87764 6.90347 6.99304 7.02338 7.36604 7.66915 7.68637 7.87993 8.37860 8.53791 9.20806 9.89548 10.44874 11.30876 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.003727 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.154417 B = 7510.529907 C = 8215.520865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C 0.526 3.474 4 O -0.517 6.517 5 N -0.722 5.722 6 C 0.155 3.845 7 H 0.093 0.907 8 C -0.119 4.119 9 C -0.131 4.131 10 C 0.147 3.853 11 N -0.584 5.584 12 C -0.250 4.250 13 H 0.064 0.936 14 C 0.006 3.994 15 N -0.897 5.897 16 Si 0.896 3.104 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.278 1.278 20 C 0.161 3.839 21 C -0.151 4.151 22 C -0.150 4.150 23 C 0.254 3.746 24 F -0.165 7.165 25 F -0.193 7.193 26 C -0.145 4.145 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.392 0.608 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.101 0.899 36 H 0.022 0.978 37 H 0.253 0.747 38 H 0.039 0.961 39 H 0.027 0.973 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.286 -19.311 -3.164 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 C 0.310 3.690 4 O -0.391 6.391 5 N -0.373 5.373 6 C 0.052 3.948 7 H 0.111 0.889 8 C -0.157 4.157 9 C -0.171 4.171 10 C 0.023 3.977 11 N -0.304 5.304 12 C -0.379 4.379 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.542 5.542 16 Si 0.726 3.274 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.203 1.203 20 C 0.031 3.969 21 C -0.193 4.193 22 C -0.188 4.188 23 C 0.218 3.782 24 F -0.146 7.146 25 F -0.174 7.174 26 C -0.183 4.183 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.127 0.873 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.480 -18.908 -2.620 21.776 hybrid contribution 0.726 -0.220 0.165 0.777 sum -9.754 -19.128 -2.456 21.611 Atomic orbital electron populations 1.21662 0.90671 1.03004 1.03367 1.21801 0.98076 0.93257 0.97920 1.19656 0.82392 0.85309 0.81661 1.90774 1.30840 1.79600 1.37934 1.46419 1.42733 1.13134 1.35029 1.21255 0.99407 0.78465 0.95655 0.88861 1.21329 1.00271 0.99206 0.94925 1.20997 0.96263 1.00289 0.99527 1.20335 1.02468 0.91621 0.83271 1.43934 1.08503 1.76018 1.01985 1.19146 1.06603 1.16471 0.95728 0.91879 1.24993 1.00394 0.95369 0.98494 1.70016 1.33849 1.19415 1.30878 0.86357 0.84172 0.76727 0.80098 1.21449 1.21842 1.20273 1.20261 0.88070 0.90760 0.97810 1.23327 0.97842 0.99337 0.98786 1.24219 0.96651 1.00254 0.97696 1.22015 0.82975 0.72651 1.00596 1.93118 1.53735 1.70635 1.97097 1.92995 1.94354 1.32843 1.97238 1.24057 0.95981 0.99714 0.98586 0.91480 0.91153 0.91096 0.77393 0.92519 0.90972 0.92233 0.93899 0.88115 0.95952 0.93730 0.94255 0.95516 0.93196 0.92511 0.86097 0.88480 0.87330 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.09 37.16 0.34 -0.49 16 2 C -0.11 -1.02 1.25 -154.85 -0.19 -1.22 16 3 C 0.53 7.48 6.27 -10.98 -0.07 7.41 16 4 O -0.52 -9.94 14.48 5.56 0.08 -9.86 16 5 N -0.72 -9.41 4.86 -54.25 -0.26 -9.68 16 6 C 0.15 2.60 2.22 -68.39 -0.15 2.45 16 7 H 0.09 1.98 6.27 -51.93 -0.33 1.66 16 8 C -0.12 -1.84 5.33 -28.40 -0.15 -1.99 16 9 C -0.13 -2.47 5.20 -30.19 -0.16 -2.63 16 10 C 0.15 3.36 5.37 -5.20 -0.03 3.33 16 11 N -0.58 -14.36 2.56 -175.09 -0.45 -14.81 16 12 C -0.25 -6.94 9.54 -15.06 -0.14 -7.08 16 13 H 0.06 1.79 7.90 -52.49 -0.41 1.38 16 14 C 0.01 0.17 4.93 -17.43 -0.09 0.09 16 15 N -0.90 -25.90 11.25 55.49 0.62 -25.28 16 16 Si 0.90 22.27 29.60 -169.99 -5.03 17.24 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 C 0.16 3.36 5.18 -4.66 -0.02 3.34 16 21 C -0.15 -2.71 5.98 -24.76 -0.15 -2.86 16 22 C -0.15 -1.26 7.02 -25.82 -0.18 -1.44 16 23 C 0.25 2.96 3.27 -25.82 -0.08 2.88 16 24 F -0.17 -2.63 15.76 2.25 0.04 -2.59 16 25 F -0.19 -2.29 17.41 2.25 0.04 -2.25 16 26 C -0.15 -1.44 6.82 -25.92 -0.18 -1.61 16 27 H 0.07 0.37 7.11 -51.93 -0.37 0.00 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.30 7.98 -51.93 -0.41 -0.11 16 30 H 0.39 3.74 7.46 -40.82 -0.30 3.43 16 31 H 0.06 0.72 7.85 -51.94 -0.41 0.31 16 32 H 0.07 1.10 6.29 -51.93 -0.33 0.78 16 33 H 0.06 1.24 6.93 -51.93 -0.36 0.88 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 2.64 5.65 -51.93 -0.29 2.34 16 36 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 39 H 0.03 0.52 6.88 -51.93 -0.36 0.16 16 40 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.12 0.65 7.99 -51.93 -0.41 0.24 16 43 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 44 H 0.11 1.30 7.41 -51.93 -0.38 0.92 16 45 H 0.12 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -32.57 353.62 -7.77 -40.33 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.88 Total: 1.39 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.26 Total: 0.17 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.09 Total: -49.77 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.57 -7.77 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052855780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.305 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds