Wall clock time and date at job start Tue Mar 31 2020 10:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00286 * 2 1 4 4 H 1.48506 * 109.47493 * 240.00259 * 3 2 1 5 5 H 1.48506 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47542 * 120.00170 * 3 2 1 7 7 C 1.38816 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99924 * 163.08887 * 7 2 1 9 9 N 1.36936 * 120.00312 * 343.08255 * 7 2 1 10 10 C 1.46933 * 120.60488 * 331.80886 * 9 7 2 11 11 C 1.53189 * 108.77076 * 233.57375 * 10 9 7 12 12 C 1.53041 * 109.33740 * 305.41220 * 11 10 9 13 13 C 1.53041 * 109.53983 * 61.35144 * 12 11 10 14 14 H 1.09001 * 109.49698 * 58.61525 * 13 12 11 15 15 C 1.52996 * 109.49842 * 178.68486 * 13 12 11 16 16 H 1.08996 * 109.49689 * 59.99526 * 15 13 12 17 17 C 1.53045 * 109.49722 * 180.02562 * 15 13 12 18 18 C 1.53036 * 109.53914 * 181.28532 * 17 15 13 19 19 C 1.53197 * 109.33817 * 298.67995 * 18 17 15 20 20 N 1.46924 * 108.77427 * 54.61899 * 19 18 17 21 21 C 1.34779 * 120.63173 * 126.41516 * 20 19 18 22 22 O 1.21276 * 120.00368 * 179.97438 * 21 20 19 23 23 C 1.50703 * 119.99577 * 359.97438 * 21 20 19 24 24 F 1.39894 * 109.47307 * 55.00066 * 23 21 20 25 25 F 1.39898 * 109.46753 * 174.99814 * 23 21 20 26 26 C 1.46925 * 118.73914 * 306.39377 * 20 19 18 27 27 C 1.46929 * 120.62859 * 151.82146 * 9 7 2 28 28 H 0.96998 * 119.99746 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.56610 * 113.80025 * 10 9 7 30 30 H 1.09007 * 109.61416 * 353.37102 * 10 9 7 31 31 H 1.08997 * 109.50231 * 185.44114 * 11 10 9 32 32 H 1.09001 * 109.49661 * 65.37868 * 11 10 9 33 33 H 1.08999 * 109.46050 * 181.36594 * 12 11 10 34 34 H 1.08993 * 109.45842 * 301.32859 * 12 11 10 35 35 H 1.09010 * 109.45494 * 301.33122 * 17 15 13 36 36 H 1.08999 * 109.46386 * 61.29341 * 17 15 13 37 37 H 1.08993 * 109.49891 * 178.71367 * 18 17 15 38 38 H 1.09004 * 109.47472 * 58.62733 * 18 17 15 39 39 H 1.09001 * 109.58288 * 294.83584 * 19 18 17 40 40 H 1.08997 * 109.70295 * 174.47763 * 19 18 17 41 41 H 1.08997 * 109.46894 * 294.99776 * 23 21 20 42 42 H 1.09008 * 109.58849 * 293.81970 * 26 20 19 43 43 H 1.09003 * 109.58928 * 173.39997 * 26 20 19 44 44 H 1.08992 * 109.58469 * 6.61076 * 27 9 7 45 45 H 1.09002 * 109.70235 * 246.24906 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2224 -0.2726 9 7 1.3700 -2.3626 0.3440 10 6 0.2264 -2.3406 1.2663 11 6 0.4977 -3.3211 2.4115 12 6 0.8123 -4.7023 1.8323 13 6 2.0676 -4.6181 0.9609 14 1 2.9027 -4.2552 1.5601 15 6 2.4000 -6.0057 0.4088 16 1 1.5654 -6.3680 -0.1912 17 6 3.6557 -5.9216 -0.4621 18 6 3.9708 -7.3028 -1.0407 19 6 4.2410 -8.2832 0.1050 20 7 3.0963 -8.2615 1.0258 21 6 2.4657 -9.4035 1.3645 22 8 1.5223 -9.3724 2.1259 23 6 2.9328 -10.7191 0.7968 24 9 4.2933 -10.8900 1.0745 25 9 2.2038 -11.7625 1.3772 26 6 2.6525 -6.9713 1.5709 27 6 1.8138 -3.6528 -0.2013 28 1 -0.4850 0.8401 0.0004 29 1 -0.6769 -2.6402 0.7350 30 1 0.0998 -1.3353 1.6683 31 1 -0.3827 -3.3866 3.0508 32 1 1.3473 -2.9702 2.9974 33 1 0.9819 -5.4073 2.6460 34 1 -0.0279 -5.0421 1.2268 35 1 3.4866 -5.2164 -1.2759 36 1 4.4958 -5.5820 0.1438 37 1 4.8518 -7.2376 -1.6791 38 1 3.1214 -7.6536 -1.6269 39 1 5.1438 -7.9834 0.6372 40 1 4.3695 -9.2891 -0.2947 41 1 2.7787 -10.7244 -0.2822 42 1 3.4258 -6.5645 2.2227 43 1 1.7313 -7.1110 2.1366 44 1 2.7343 -3.5128 -0.7677 45 1 1.0418 -4.0612 -0.8535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053003490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:16 Heat of formation + Delta-G solvation = -125.397482 kcal Electronic energy + Delta-G solvation = -27801.913078 eV Core-core repulsion = 23683.044847 eV Total energy + Delta-G solvation = -4118.868231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.56101 -47.57176 -40.49829 -38.51906 -36.93635 -34.13365 -32.78562 -31.60306 -30.46756 -29.30728 -27.79423 -25.74417 -24.88655 -23.62301 -22.22722 -21.44808 -20.51980 -19.75404 -19.06906 -18.55750 -18.06704 -17.54049 -16.69846 -16.24898 -15.41303 -15.05938 -14.89094 -14.67011 -14.35777 -14.22478 -14.02126 -13.85623 -13.75149 -13.44489 -13.32446 -13.18331 -13.07503 -12.65238 -12.46105 -12.39159 -12.17723 -11.73442 -11.46435 -11.22568 -10.97216 -10.88057 -10.70538 -10.59539 -10.33803 -10.17730 -10.15014 -10.11273 -9.87355 -9.43371 -9.36342 -8.95515 -8.45497 -6.65429 -5.78392 -3.21284 1.85298 2.21649 3.32169 3.37283 3.43547 3.44383 3.56171 4.14865 4.23917 4.43852 4.48944 4.66061 4.72944 4.87334 5.05859 5.11363 5.31909 5.36264 5.45144 5.52486 5.55635 5.62772 5.69115 5.77800 5.85796 5.89919 5.99962 6.07436 6.19908 6.25290 6.38709 6.39793 6.47018 6.66181 6.72364 6.81479 6.86826 6.91136 7.01239 7.42359 7.49437 7.68793 7.79010 8.45774 9.21831 9.85741 10.42763 11.29832 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.002952 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.070761 B = 9483.345978 C =10129.416722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.095 4.095 14 H 0.069 0.931 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.119 4.119 18 C -0.136 4.136 19 C 0.098 3.902 20 N -0.593 5.593 21 C 0.471 3.529 22 O -0.504 6.504 23 C 0.257 3.743 24 F -0.188 7.188 25 F -0.176 7.176 26 C 0.114 3.886 27 C 0.156 3.844 28 H 0.254 0.746 29 H 0.016 0.984 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.508 -19.297 -0.934 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.045 3.955 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.116 4.116 14 H 0.087 0.913 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.156 4.156 18 C -0.174 4.174 19 C -0.024 4.024 20 N -0.326 5.326 21 C 0.254 3.746 22 O -0.379 6.379 23 C 0.200 3.800 24 F -0.169 7.169 25 F -0.157 7.157 26 C -0.007 4.007 27 C 0.029 3.971 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.153 0.847 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 7.895 -19.135 -0.512 20.706 hybrid contribution 0.512 0.746 0.000 0.905 sum 8.406 -18.389 -0.512 20.225 Atomic orbital electron populations 1.70029 1.05275 1.25585 1.53768 1.25040 0.95261 0.98379 1.00917 0.86386 0.78924 0.83439 0.78100 1.20908 1.21648 1.21050 1.19125 0.92458 0.84868 1.41874 0.91838 1.44028 1.35872 1.01403 1.50087 1.20775 0.88540 0.98175 0.88046 1.22179 0.99974 0.96219 0.99808 1.21499 0.97332 0.97414 0.98127 1.21670 0.98003 0.92940 0.99008 0.91305 1.21535 0.98100 0.95676 0.95871 0.90861 1.21654 0.97778 0.96106 1.00110 1.21962 1.02511 0.95910 0.96985 1.22027 0.88461 1.00938 0.91017 1.48178 1.31645 1.06807 1.45963 1.20994 0.84566 0.85903 0.83175 1.90819 1.27184 1.85848 1.33999 1.21629 0.73866 0.85000 0.99485 1.93035 1.32428 1.95959 1.95484 1.93061 1.77025 1.58543 1.87098 1.21970 1.01640 0.80681 0.96448 1.20902 0.97338 0.86628 0.92217 0.93596 0.96587 0.89702 0.93418 0.92854 0.93601 0.92821 0.90351 0.91543 0.90249 0.91362 0.90202 0.89896 0.84749 0.90811 0.88389 0.92828 0.96742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.20 55.49 0.62 -25.50 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 8 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -14.54 2.99 -172.31 -0.52 -15.06 16 10 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 11 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 12 C -0.11 -1.77 4.86 -26.69 -0.13 -1.90 16 13 C -0.10 -1.52 1.92 -90.50 -0.17 -1.69 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.09 -1.14 1.92 -90.50 -0.17 -1.31 16 16 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.12 -1.24 4.86 -26.69 -0.13 -1.37 16 18 C -0.14 -1.02 6.08 -26.61 -0.16 -1.18 16 19 C 0.10 0.71 5.91 -3.71 -0.02 0.69 16 20 N -0.59 -6.11 2.97 -172.76 -0.51 -6.63 16 21 C 0.47 5.49 7.55 -10.98 -0.08 5.41 16 22 O -0.50 -7.98 16.03 5.56 0.09 -7.89 16 23 C 0.26 2.18 4.62 36.01 0.17 2.35 16 24 F -0.19 -1.61 15.53 2.25 0.03 -1.57 16 25 F -0.18 -1.95 16.95 2.25 0.04 -1.91 16 26 C 0.11 1.35 5.19 -3.71 -0.02 1.33 16 27 C 0.16 3.08 5.28 -3.71 -0.02 3.06 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 2.27 6.06 -51.92 -0.31 1.96 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.69 6.50 -51.93 -0.34 0.35 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.90 6.50 -51.92 -0.34 0.57 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.44 5.34 -51.93 -0.28 0.16 16 41 H 0.14 0.57 7.92 -51.93 -0.41 0.16 16 42 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.10 1.34 5.59 -51.93 -0.29 1.05 16 44 H 0.05 1.03 6.52 -51.93 -0.34 0.69 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -31.74 348.97 -8.10 -39.84 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.93 Total: -2.51 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.16 Total: -0.48 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.41 Total: -47.18 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.07 Total: -3.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.74 -8.10 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053003490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.556 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds