Wall clock time and date at job start Tue Mar 31 2020 10:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00286 * 2 1 4 4 H 1.48506 * 109.47493 * 240.00259 * 3 2 1 5 5 H 1.48506 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47542 * 120.00170 * 3 2 1 7 7 C 1.38816 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99924 * 163.08887 * 7 2 1 9 9 N 1.36936 * 120.00312 * 343.08255 * 7 2 1 10 10 C 1.46933 * 120.60488 * 331.80886 * 9 7 2 11 11 C 1.53189 * 108.77076 * 233.57375 * 10 9 7 12 12 C 1.53041 * 109.33740 * 305.41220 * 11 10 9 13 13 C 1.53041 * 109.53983 * 61.35144 * 12 11 10 14 14 H 1.09001 * 109.49698 * 58.61525 * 13 12 11 15 15 C 1.52996 * 109.49842 * 178.68486 * 13 12 11 16 16 H 1.08996 * 109.49689 * 59.99526 * 15 13 12 17 17 C 1.53045 * 109.49722 * 180.02562 * 15 13 12 18 18 C 1.53036 * 109.53914 * 181.28532 * 17 15 13 19 19 C 1.53197 * 109.33817 * 298.67995 * 18 17 15 20 20 N 1.46924 * 108.77427 * 54.61899 * 19 18 17 21 21 C 1.34779 * 120.63173 * 126.41516 * 20 19 18 22 22 O 1.21276 * 120.00368 * 179.97438 * 21 20 19 23 23 C 1.50703 * 119.99577 * 359.97438 * 21 20 19 24 24 F 1.39894 * 109.47307 * 55.00066 * 23 21 20 25 25 F 1.39898 * 109.46753 * 174.99814 * 23 21 20 26 26 C 1.46925 * 118.73914 * 306.39377 * 20 19 18 27 27 C 1.46929 * 120.62859 * 151.82146 * 9 7 2 28 28 H 0.96998 * 119.99746 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.56610 * 113.80025 * 10 9 7 30 30 H 1.09007 * 109.61416 * 353.37102 * 10 9 7 31 31 H 1.08997 * 109.50231 * 185.44114 * 11 10 9 32 32 H 1.09001 * 109.49661 * 65.37868 * 11 10 9 33 33 H 1.08999 * 109.46050 * 181.36594 * 12 11 10 34 34 H 1.08993 * 109.45842 * 301.32859 * 12 11 10 35 35 H 1.09010 * 109.45494 * 301.33122 * 17 15 13 36 36 H 1.08999 * 109.46386 * 61.29341 * 17 15 13 37 37 H 1.08993 * 109.49891 * 178.71367 * 18 17 15 38 38 H 1.09004 * 109.47472 * 58.62733 * 18 17 15 39 39 H 1.09001 * 109.58288 * 294.83584 * 19 18 17 40 40 H 1.08997 * 109.70295 * 174.47763 * 19 18 17 41 41 H 1.08997 * 109.46894 * 294.99776 * 23 21 20 42 42 H 1.09008 * 109.58849 * 293.81970 * 26 20 19 43 43 H 1.09003 * 109.58928 * 173.39997 * 26 20 19 44 44 H 1.08992 * 109.58469 * 6.61076 * 27 9 7 45 45 H 1.09002 * 109.70235 * 246.24906 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2224 -0.2726 9 7 1.3700 -2.3626 0.3440 10 6 0.2264 -2.3406 1.2663 11 6 0.4977 -3.3211 2.4115 12 6 0.8123 -4.7023 1.8323 13 6 2.0676 -4.6181 0.9609 14 1 2.9027 -4.2552 1.5601 15 6 2.4000 -6.0057 0.4088 16 1 1.5654 -6.3680 -0.1912 17 6 3.6557 -5.9216 -0.4621 18 6 3.9708 -7.3028 -1.0407 19 6 4.2410 -8.2832 0.1050 20 7 3.0963 -8.2615 1.0258 21 6 2.4657 -9.4035 1.3645 22 8 1.5223 -9.3724 2.1259 23 6 2.9328 -10.7191 0.7968 24 9 4.2933 -10.8900 1.0745 25 9 2.2038 -11.7625 1.3772 26 6 2.6525 -6.9713 1.5709 27 6 1.8138 -3.6528 -0.2013 28 1 -0.4850 0.8401 0.0004 29 1 -0.6769 -2.6402 0.7350 30 1 0.0998 -1.3353 1.6683 31 1 -0.3827 -3.3866 3.0508 32 1 1.3473 -2.9702 2.9974 33 1 0.9819 -5.4073 2.6460 34 1 -0.0279 -5.0421 1.2268 35 1 3.4866 -5.2164 -1.2759 36 1 4.4958 -5.5820 0.1438 37 1 4.8518 -7.2376 -1.6791 38 1 3.1214 -7.6536 -1.6269 39 1 5.1438 -7.9834 0.6372 40 1 4.3695 -9.2891 -0.2947 41 1 2.7787 -10.7244 -0.2822 42 1 3.4258 -6.5645 2.2227 43 1 1.7313 -7.1110 2.1366 44 1 2.7343 -3.5128 -0.7677 45 1 1.0418 -4.0612 -0.8535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053003490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:16 Heat of formation + Delta-G solvation = -144.012132 kcal Electronic energy + Delta-G solvation = -27802.720270 eV Core-core repulsion = 23683.044847 eV Total energy + Delta-G solvation = -4119.675422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.24637 -48.27509 -41.40943 -39.78414 -38.17842 -35.60221 -34.07138 -32.80543 -32.21724 -30.45355 -28.80170 -27.32792 -26.06971 -24.78792 -23.66754 -22.74773 -21.64361 -20.69911 -20.53589 -19.29072 -18.78172 -18.61735 -18.27277 -17.17197 -16.83801 -16.32825 -15.96372 -15.75816 -15.50779 -15.26687 -15.09005 -14.93283 -14.86840 -14.60977 -14.51885 -14.32483 -14.12041 -13.97735 -13.82652 -13.63480 -13.16930 -13.01075 -12.97454 -12.64938 -12.46016 -12.28409 -11.98813 -11.93617 -11.82717 -11.71228 -11.61412 -11.46022 -11.16936 -10.90973 -10.79257 -10.52501 -9.83968 -8.66321 -7.86295 -5.32399 1.00402 1.43054 1.46743 1.49603 1.56049 2.51601 2.66322 2.94661 3.28013 3.49177 3.58495 3.68303 3.72637 3.86638 3.88319 4.05494 4.13618 4.19919 4.30193 4.38063 4.47777 4.59263 4.63033 4.73460 4.77144 4.83748 4.86411 4.91812 4.98909 5.02334 5.08876 5.15055 5.25534 5.33415 5.36354 5.38926 5.45568 5.52298 5.58834 5.67031 5.77341 6.04928 6.39805 6.65861 7.15370 7.87716 8.40004 9.19830 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.002952 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.070761 B = 9483.345978 C =10129.416722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.176 3.824 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.082 4.082 14 H 0.066 0.934 15 C -0.080 4.080 16 H 0.065 0.935 17 C -0.119 4.119 18 C -0.128 4.128 19 C 0.094 3.906 20 N -0.588 5.588 21 C 0.463 3.537 22 O -0.557 6.557 23 C 0.264 3.736 24 F -0.186 7.186 25 F -0.193 7.193 26 C 0.118 3.882 27 C 0.155 3.845 28 H 0.249 0.751 29 H -0.010 1.010 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.188 0.812 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 -21.115 -1.591 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.051 3.949 11 C -0.171 4.171 12 C -0.139 4.139 13 C -0.103 4.103 14 H 0.085 0.915 15 C -0.099 4.099 16 H 0.083 0.917 17 C -0.157 4.157 18 C -0.166 4.166 19 C -0.027 4.027 20 N -0.320 5.320 21 C 0.248 3.752 22 O -0.435 6.435 23 C 0.207 3.793 24 F -0.167 7.167 25 F -0.174 7.174 26 C -0.004 4.004 27 C 0.030 3.970 28 H 0.058 0.942 29 H 0.008 0.992 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.205 0.795 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 10.465 -20.983 -1.193 23.478 hybrid contribution -0.263 1.314 0.174 1.351 sum 10.203 -19.669 -1.018 22.181 Atomic orbital electron populations 1.70197 1.06812 1.25851 1.55498 1.25825 0.95997 1.01611 1.01350 0.85346 0.77553 0.79166 0.78427 1.19835 1.22269 1.20424 1.19508 0.92888 0.86002 1.40856 0.91305 1.44317 1.35804 1.02531 1.50738 1.20569 0.87745 0.97482 0.89146 1.22023 1.00599 0.96406 0.98116 1.21466 0.97476 0.96096 0.98854 1.21458 0.97478 0.94143 0.97180 0.91509 1.21357 0.99032 0.93332 0.96226 0.91688 1.21645 0.96627 0.98046 0.99370 1.21931 1.03729 0.93741 0.97194 1.22317 0.87440 1.02568 0.90387 1.48265 1.31956 1.05878 1.45876 1.21653 0.83867 0.87254 0.82466 1.90796 1.29559 1.86775 1.36371 1.21898 0.73410 0.82477 1.01491 1.93042 1.32191 1.95771 1.95679 1.93029 1.77575 1.59129 1.87680 1.21759 1.01167 0.81524 0.95987 1.21040 0.96936 0.85427 0.93600 0.94206 0.99193 0.93171 0.91932 0.92973 0.91207 0.93485 0.91664 0.91094 0.87780 0.91139 0.89097 0.87095 0.79508 0.90003 0.90423 0.92235 0.97780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 11.20 21.65 0.24 -55.96 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 44.74 29.59 68.60 2.03 46.77 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.26 -14.36 9.58 84.03 0.81 -13.56 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -30.68 2.99 -699.06 -2.09 -32.78 16 10 C 0.18 8.74 5.30 86.36 0.46 9.20 16 11 C -0.13 -5.11 6.08 30.67 0.19 -4.93 16 12 C -0.10 -3.32 4.86 30.62 0.15 -3.17 16 13 C -0.08 -2.55 1.92 -10.72 -0.02 -2.57 16 14 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 15 C -0.08 -1.85 1.92 -10.72 -0.02 -1.87 16 16 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 17 C -0.12 -2.19 4.86 30.62 0.15 -2.04 16 18 C -0.13 -1.43 6.08 30.67 0.19 -1.25 16 19 C 0.09 0.97 5.91 86.36 0.51 1.48 16 20 N -0.59 -10.57 2.97 -818.90 -2.43 -13.01 16 21 C 0.46 9.87 7.55 87.66 0.66 10.53 16 22 O -0.56 -17.39 16.03 -3.02 -0.05 -17.44 16 23 C 0.26 3.63 4.62 71.24 0.33 3.96 16 24 F -0.19 -2.50 15.53 44.97 0.70 -1.80 16 25 F -0.19 -3.91 16.95 44.97 0.76 -3.14 16 26 C 0.12 2.58 5.19 86.36 0.45 3.03 16 27 C 0.16 6.17 5.28 86.36 0.46 6.63 16 28 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 29 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 30 H 0.05 2.82 6.06 -2.38 -0.01 2.80 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.00 6.50 -2.39 -0.02 1.98 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.39 6.50 -2.38 -0.02 1.37 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 0.58 5.34 -2.39 -0.01 0.57 16 41 H 0.19 0.66 7.92 -2.39 -0.02 0.64 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.08 2.06 5.59 -2.39 -0.01 2.05 16 44 H 0.06 2.26 6.52 -2.39 -0.02 2.25 16 45 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -72.30 348.97 4.86 -67.44 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.99 Total: 7.02 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 4.71 Total: 2.91 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -4.28 Total: -101.75 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.05 Total: -17.44 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 1.46 Total: -4.95 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.30 4.86 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053003490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.575 kcal (2) G-P(sol) polarization free energy of solvation -72.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds