Wall clock time and date at job start Tue Mar 31 2020 10:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99471 * 2 1 4 4 H 1.48497 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46924 * 300.00255 * 3 2 1 6 6 H 1.48500 * 109.47193 * 60.00351 * 3 2 1 7 7 C 1.38807 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99938 * 197.37155 * 7 2 1 9 9 N 1.36935 * 120.00249 * 17.36761 * 7 2 1 10 10 C 1.46929 * 120.62734 * 27.68424 * 9 7 2 11 11 C 1.53192 * 108.77548 * 126.36907 * 10 9 7 12 12 C 1.53049 * 109.31262 * 54.63447 * 11 10 9 13 13 C 1.53036 * 109.53508 * 298.63920 * 12 11 10 14 14 H 1.09008 * 109.49541 * 301.37766 * 13 12 11 15 15 C 1.53002 * 109.49348 * 181.31811 * 13 12 11 16 16 H 1.08999 * 109.49744 * 299.99374 * 15 13 12 17 17 C 1.53039 * 109.49949 * 60.06425 * 15 13 12 18 18 C 1.53043 * 109.53875 * 181.28750 * 17 15 13 19 19 C 1.53195 * 109.33455 * 298.67951 * 18 17 15 20 20 N 1.46924 * 108.77983 * 54.61797 * 19 18 17 21 21 C 1.34774 * 120.62748 * 126.41264 * 20 19 18 22 22 O 1.21290 * 119.99572 * 179.97438 * 21 20 19 23 23 C 1.50698 * 120.00420 * 359.97438 * 21 20 19 24 24 F 1.39900 * 109.47094 * 54.99885 * 23 21 20 25 25 F 1.39897 * 109.47339 * 175.00128 * 23 21 20 26 26 C 1.46922 * 118.74038 * 306.39378 * 20 19 18 27 27 C 1.46925 * 120.63493 * 207.66071 * 9 7 2 28 28 H 0.96996 * 120.00742 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58837 * 6.58425 * 10 9 7 30 30 H 1.09006 * 109.58704 * 246.15835 * 10 9 7 31 31 H 1.09002 * 109.49789 * 174.58096 * 11 10 9 32 32 H 1.08994 * 109.49991 * 294.65251 * 11 10 9 33 33 H 1.09002 * 109.45753 * 58.65321 * 12 11 10 34 34 H 1.08997 * 109.45927 * 178.62387 * 12 11 10 35 35 H 1.09003 * 109.45709 * 301.33195 * 17 15 13 36 36 H 1.08994 * 109.46698 * 61.29537 * 17 15 13 37 37 H 1.08997 * 109.49492 * 178.71351 * 18 17 15 38 38 H 1.08997 * 109.49987 * 58.64039 * 18 17 15 39 39 H 1.09003 * 109.58332 * 294.82807 * 19 18 17 40 40 H 1.08995 * 109.70261 * 174.48053 * 19 18 17 41 41 H 1.08999 * 109.47202 * 294.99882 * 23 21 20 42 42 H 1.09008 * 109.58825 * 293.82046 * 26 20 19 43 43 H 1.08992 * 109.59003 * 173.39302 * 26 20 19 44 44 H 1.09000 * 109.58223 * 113.83917 * 27 9 7 45 45 H 1.08999 * 109.57983 * 353.42130 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2787 9 7 1.3726 -2.3608 -0.3550 10 6 0.2283 -2.3338 -1.2763 11 6 0.5020 -3.3026 -2.4310 12 6 0.8203 -4.6883 -1.8645 13 6 2.0756 -4.6087 -0.9928 14 1 2.9096 -4.2383 -1.5890 15 6 2.4119 -6.0006 -0.4537 16 1 1.5784 -6.3705 0.1434 17 6 2.6651 -6.9541 -1.6236 18 6 2.9700 -8.3542 -1.0860 19 6 4.2340 -8.3016 -0.2219 20 7 4.0526 -7.2815 0.8198 21 6 4.2346 -7.5876 2.1197 22 8 4.0823 -6.7363 2.9702 23 6 4.6273 -8.9873 2.5164 24 9 5.7878 -9.3586 1.8289 25 9 4.8670 -9.0318 3.8940 26 6 3.6695 -5.9213 0.4176 27 6 1.8199 -3.6548 0.1781 28 1 -0.4851 0.8399 0.0004 29 1 0.0987 -1.3251 -1.6685 30 1 -0.6739 -2.6412 -0.7474 31 1 -0.3787 -3.3645 -3.0704 32 1 1.3502 -2.9436 -3.0138 33 1 -0.0188 -5.0357 -1.2618 34 1 0.9914 -5.3853 -2.6848 35 1 1.7798 -6.9933 -2.2583 36 1 3.5140 -6.5966 -2.2064 37 1 3.1278 -9.0378 -1.9202 38 1 2.1316 -8.7030 -0.4832 39 1 5.0908 -8.0410 -0.8433 40 1 4.4019 -9.2729 0.2431 41 1 3.8205 -9.6760 2.2656 42 1 4.4803 -5.4665 -0.1517 43 1 3.4625 -5.3226 1.3045 44 1 1.0475 -4.0698 0.8256 45 1 2.7404 -3.5176 0.7455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053003492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:24 Heat of formation + Delta-G solvation = -124.424333 kcal Electronic energy + Delta-G solvation = -27902.436785 eV Core-core repulsion = 23783.610753 eV Total energy + Delta-G solvation = -4118.826032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.51003 -47.52031 -40.44741 -38.49950 -36.91754 -34.15264 -32.54417 -31.88079 -30.39143 -29.20795 -27.81772 -25.70383 -24.87522 -23.65668 -22.17276 -21.44990 -20.51716 -19.74033 -19.07015 -18.51226 -18.01864 -17.48701 -16.68915 -16.14409 -15.35177 -15.00840 -14.83331 -14.76441 -14.32448 -14.26246 -14.05981 -13.82081 -13.64860 -13.45886 -13.29035 -13.15324 -13.06439 -12.59879 -12.49324 -12.36275 -12.18794 -11.68534 -11.42019 -11.18198 -11.00117 -10.90913 -10.82723 -10.54660 -10.25129 -10.15289 -10.13120 -10.07920 -9.84821 -9.51309 -9.31003 -8.90310 -8.43609 -6.63605 -5.75888 -3.17819 1.92871 2.27617 3.36755 3.39033 3.47036 3.49382 3.60976 4.19924 4.27835 4.43287 4.52660 4.62753 4.71669 4.85056 5.05910 5.12199 5.34235 5.37243 5.44419 5.54881 5.58998 5.61577 5.66168 5.77507 5.82616 5.87308 5.99945 6.06533 6.15193 6.22434 6.38716 6.41280 6.45599 6.64377 6.71285 6.83176 6.89400 6.91988 7.02542 7.42360 7.57410 7.69701 7.82963 8.47978 9.24625 9.88301 10.44759 11.32523 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.003439 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.908637 B = 8139.726165 C = 9235.680401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.095 4.095 14 H 0.069 0.931 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.118 4.118 18 C -0.135 4.135 19 C 0.099 3.901 20 N -0.594 5.594 21 C 0.469 3.531 22 O -0.498 6.498 23 C 0.258 3.742 24 F -0.188 7.188 25 F -0.176 7.176 26 C 0.113 3.887 27 C 0.151 3.849 28 H 0.252 0.748 29 H 0.086 0.914 30 H 0.016 0.984 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.016 0.984 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -21.674 -3.821 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.116 4.116 14 H 0.087 0.913 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.174 4.174 19 C -0.024 4.024 20 N -0.328 5.328 21 C 0.252 3.748 22 O -0.372 6.372 23 C 0.200 3.800 24 F -0.170 7.170 25 F -0.157 7.157 26 C -0.008 4.008 27 C 0.024 3.976 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.034 0.966 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.198 -21.045 -3.312 22.187 hybrid contribution 0.472 0.739 -0.013 0.877 sum 6.670 -20.305 -3.326 21.630 Atomic orbital electron populations 1.70050 1.05261 1.25311 1.54119 1.25018 0.95252 0.98365 1.01018 0.86254 0.79420 0.84069 0.77248 1.20252 1.21603 1.21735 1.19231 0.92727 0.84892 1.41189 0.91667 1.44049 1.35817 1.01239 1.50270 1.20780 0.88512 0.98370 0.87946 1.22186 0.99893 0.96263 0.99860 1.21459 0.97090 0.97350 0.97997 1.21661 0.98151 0.92873 0.98940 0.91294 1.21538 0.96899 0.96733 0.96013 0.90867 1.21660 1.02367 0.93596 0.97903 1.21957 0.97293 0.98568 0.99538 1.21992 0.99054 0.91126 0.90231 1.48161 1.66901 1.12811 1.04888 1.20997 0.80059 0.89997 0.83748 1.90855 1.49299 1.47951 1.49073 1.21629 0.86575 0.96603 0.75150 1.93033 1.52487 1.92569 1.78878 1.93063 1.95220 1.97106 1.30295 1.21963 0.97060 0.81024 1.00752 1.20961 0.97507 0.86803 0.92338 0.93749 0.89616 0.96637 0.93477 0.92847 0.92945 0.93501 0.90834 0.91634 0.90421 0.91396 0.90269 0.89909 0.84836 0.90675 0.88000 0.96592 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.81 2.99 -172.33 -0.52 -15.33 16 10 C 0.17 4.04 5.31 -3.71 -0.02 4.02 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.83 16 12 C -0.10 -1.60 4.86 -26.69 -0.13 -1.73 16 13 C -0.10 -1.52 1.92 -90.51 -0.17 -1.69 16 14 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 15 C -0.09 -1.14 1.92 -90.49 -0.17 -1.31 16 16 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 17 C -0.12 -1.10 4.86 -26.69 -0.13 -1.23 16 18 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 19 C 0.10 0.72 5.91 -3.71 -0.02 0.70 16 20 N -0.59 -6.47 2.97 -172.76 -0.51 -6.99 16 21 C 0.47 5.86 7.55 -10.99 -0.08 5.78 16 22 O -0.50 -8.54 16.03 5.55 0.09 -8.45 16 23 C 0.26 2.33 4.62 36.00 0.17 2.49 16 24 F -0.19 -1.69 15.53 2.25 0.03 -1.66 16 25 F -0.18 -2.07 16.95 2.25 0.04 -2.03 16 26 C 0.11 1.46 5.20 -3.71 -0.02 1.44 16 27 C 0.15 3.11 5.29 -3.72 -0.02 3.09 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.09 2.30 6.03 -51.93 -0.31 1.98 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.62 6.33 -51.93 -0.33 0.29 16 35 H 0.07 0.70 6.34 -51.93 -0.33 0.37 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.44 5.34 -51.93 -0.28 0.16 16 41 H 0.13 0.62 7.92 -51.93 -0.41 0.21 16 42 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 43 H 0.10 1.60 5.76 -51.93 -0.30 1.30 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.10 6.69 -51.93 -0.35 0.75 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -32.49 348.97 -8.10 -40.59 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.93 Total: -2.95 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.16 Total: 0.50 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.41 Total: -48.17 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.07 Total: -3.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.49 -8.10 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053003492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.834 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds