Wall clock time and date at job start Tue Mar 31 2020 11:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48490 * 109.47080 * 239.99734 * 3 2 1 5 5 H 1.48500 * 109.46787 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46756 * 119.99565 * 3 2 1 7 7 C 1.38809 * 119.99407 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 175.74340 * 7 2 1 9 9 N 1.36940 * 120.00485 * 355.74794 * 7 2 1 10 10 C 1.46929 * 120.63012 * 35.34414 * 9 7 2 11 11 C 1.53191 * 108.77170 * 126.39104 * 10 9 7 12 12 C 1.53039 * 109.31011 * 54.64057 * 11 10 9 13 13 C 1.53046 * 109.53857 * 298.62889 * 12 11 10 14 14 H 1.09004 * 109.49517 * 301.38309 * 13 12 11 15 15 C 1.53001 * 109.49855 * 181.32014 * 13 12 11 16 16 H 1.09002 * 109.58348 * 188.49918 * 15 13 12 17 17 C 1.53198 * 109.70159 * 308.85310 * 15 13 12 18 18 C 1.53043 * 109.30997 * 174.49254 * 17 15 13 19 19 C 1.53038 * 109.53864 * 298.63746 * 18 17 15 20 20 C 1.52758 * 109.38658 * 61.23623 * 19 18 17 21 21 N 1.46921 * 109.58709 * 68.21337 * 15 13 12 22 22 C 1.34779 * 120.63081 * 6.44123 * 21 15 13 23 23 O 1.21280 * 120.00075 * 356.69062 * 22 21 15 24 24 C 1.50700 * 119.99807 * 176.97237 * 22 21 15 25 25 F 1.39902 * 109.47000 * 184.99921 * 24 22 21 26 26 F 1.39902 * 109.47283 * 304.99401 * 24 22 21 27 27 C 1.46930 * 120.60443 * 215.32914 * 9 7 2 28 28 H 0.97009 * 119.99711 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58225 * 6.60786 * 10 9 7 30 30 H 1.08992 * 109.70325 * 246.25175 * 10 9 7 31 31 H 1.08998 * 109.50038 * 294.68944 * 11 10 9 32 32 H 1.09003 * 109.49400 * 174.58568 * 11 10 9 33 33 H 1.09007 * 109.45882 * 178.61381 * 12 11 10 34 34 H 1.08995 * 109.45494 * 58.64554 * 12 11 10 35 35 H 1.08995 * 109.49988 * 294.44482 * 17 15 13 36 36 H 1.09001 * 109.49334 * 54.51270 * 17 15 13 37 37 H 1.08998 * 109.45629 * 58.65547 * 18 17 15 38 38 H 1.08995 * 109.45568 * 178.61694 * 18 17 15 39 39 H 1.09002 * 109.49906 * 181.32063 * 19 18 17 40 40 H 1.09011 * 109.49679 * 301.41493 * 19 18 17 41 41 H 1.08996 * 109.51379 * 185.70147 * 20 19 18 42 42 H 1.09004 * 109.43195 * 65.42824 * 20 19 18 43 43 H 1.08992 * 109.47791 * 64.99861 * 24 22 21 44 44 H 1.09006 * 109.56228 * 113.80330 * 27 9 7 45 45 H 1.09004 * 109.61814 * 353.37687 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0879 -1.2036 -0.0689 9 7 1.3283 -2.3864 0.0890 10 6 0.0167 -2.5449 -0.5540 11 6 0.0564 -3.7819 -1.4568 12 6 0.5044 -4.9933 -0.6359 13 6 1.9129 -4.7488 -0.0895 14 1 2.5991 -4.5730 -0.9180 15 6 2.3729 -5.9737 0.7035 16 1 3.3069 -5.7466 1.2176 17 6 1.3018 -6.3567 1.7297 18 6 1.7070 -7.6601 2.4218 19 6 1.8052 -8.7812 1.3848 20 6 2.8763 -8.4269 0.3549 21 7 2.5767 -7.1048 -0.2117 22 6 2.4852 -6.9341 -1.5455 23 8 2.1735 -5.8531 -1.9985 24 6 2.7640 -8.0881 -2.4737 25 9 2.7178 -7.6422 -3.7990 26 9 4.0332 -8.6096 -2.2013 27 6 1.8950 -3.5225 0.8286 28 1 -0.4850 0.8402 -0.0004 29 1 -0.2054 -1.6620 -1.1534 30 1 -0.7528 -2.6726 0.2073 31 1 0.7600 -3.6147 -2.2723 32 1 -0.9373 -3.9664 -1.8650 33 1 0.5099 -5.8798 -1.2702 34 1 -0.1858 -5.1448 0.1940 35 1 1.2093 -5.5640 2.4721 36 1 0.3462 -6.4947 1.2238 37 1 2.6743 -7.5282 2.9067 38 1 0.9587 -7.9218 3.1699 39 1 2.0710 -9.7143 1.8817 40 1 0.8449 -8.8969 0.8821 41 1 2.8784 -9.1731 -0.4397 42 1 3.8522 -8.4040 0.8398 43 1 2.0129 -8.8637 -2.3251 44 1 1.2806 -3.7308 1.7046 45 1 2.9120 -3.2851 1.1410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053064209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:45 Heat of formation + Delta-G solvation = -83.500437 kcal Electronic energy + Delta-G solvation = -29102.729143 eV Core-core repulsion = 24985.677705 eV Total energy + Delta-G solvation = -4117.051438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.31093 -47.32420 -40.95286 -37.59745 -37.00363 -33.62995 -33.02806 -31.59428 -30.26759 -28.64417 -28.09338 -25.18048 -24.88130 -23.77576 -22.00138 -21.46929 -20.92106 -19.56609 -18.90020 -18.01623 -17.54641 -17.32137 -16.54989 -15.82936 -15.38250 -15.09853 -14.78029 -14.58746 -14.35725 -14.13260 -13.89728 -13.79809 -13.60117 -13.42150 -13.21951 -12.97890 -12.71332 -12.54416 -12.19523 -12.11855 -11.89893 -11.58844 -11.25181 -11.07554 -10.95810 -10.84741 -10.70145 -10.47190 -10.42128 -10.24671 -9.91148 -9.66128 -9.36671 -9.19916 -8.81484 -8.47163 -8.31640 -6.39609 -5.66880 -3.19526 2.17181 2.47796 3.44176 3.48472 3.49803 3.53925 3.80029 4.37028 4.42477 4.53636 4.56111 4.66934 4.75016 4.97636 5.13302 5.16613 5.34324 5.44242 5.48798 5.57669 5.69358 5.72653 5.85010 5.85680 5.96604 5.99759 6.07416 6.24581 6.33038 6.38881 6.56142 6.64084 6.71186 6.83351 7.00906 7.06963 7.13025 7.21255 7.34063 7.65691 7.87272 7.94955 8.00263 8.65294 9.36674 9.96664 10.56785 11.38185 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.004250 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.517213 B = 6586.613681 C = 7320.440845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.167 3.833 11 C -0.137 4.137 12 C -0.086 4.086 13 C -0.108 4.108 14 H 0.105 0.895 15 C 0.154 3.846 16 H 0.074 0.926 17 C -0.136 4.136 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.103 3.897 21 N -0.591 5.591 22 C 0.455 3.545 23 O -0.455 6.455 24 C 0.252 3.748 25 F -0.177 7.177 26 F -0.192 7.192 27 C 0.152 3.848 28 H 0.253 0.747 29 H 0.096 0.904 30 H 0.009 0.991 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.127 0.873 44 H 0.014 0.986 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 -22.216 1.853 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.176 4.176 12 C -0.123 4.123 13 C -0.128 4.128 14 H 0.123 0.877 15 C 0.052 3.948 16 H 0.092 0.908 17 C -0.174 4.174 18 C -0.158 4.158 19 C -0.173 4.173 20 C -0.020 4.020 21 N -0.326 5.326 22 C 0.237 3.763 23 O -0.327 6.327 24 C 0.195 3.805 25 F -0.158 7.158 26 F -0.173 7.173 27 C 0.024 3.976 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.145 0.855 44 H 0.032 0.968 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.139 -21.432 1.574 21.718 hybrid contribution 0.537 0.631 -0.016 0.828 sum 3.676 -20.801 1.559 21.181 Atomic orbital electron populations 1.69916 1.05310 1.25279 1.54484 1.25290 0.95513 0.98106 1.00139 0.86376 0.78920 0.83455 0.78062 1.20996 1.21629 1.20955 1.19106 0.90664 0.83298 1.44884 0.92180 1.43891 1.19575 1.09346 1.58334 1.20956 0.85977 0.95318 0.93582 1.22131 0.98503 0.97440 0.99548 1.21613 0.94849 0.98179 0.97660 1.22394 0.99096 0.92427 0.98909 0.87694 1.21544 0.98185 0.85337 0.89714 0.90798 1.22136 0.99511 0.97407 0.98391 1.21547 1.01882 0.94889 0.97520 1.21862 0.99295 0.99010 0.97161 1.21783 0.99182 0.83578 0.97457 1.48048 1.69306 1.10622 1.04666 1.20895 0.81507 0.90002 0.83873 1.90993 1.42306 1.23499 1.75924 1.21794 0.83928 0.94951 0.79877 1.93060 1.96494 1.90893 1.35350 1.93022 1.43231 1.87533 1.93533 1.21006 0.96733 0.87669 0.92166 0.93643 0.88607 0.97278 0.92631 0.94430 0.93234 0.94365 0.89932 0.90683 0.91786 0.91644 0.90617 0.91429 0.90218 0.90592 0.85544 0.96835 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.97 10.61 55.49 0.59 -26.39 16 2 C 0.01 0.22 5.32 -17.43 -0.09 0.13 16 3 Si 0.90 22.35 29.56 -169.99 -5.02 17.32 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -7.15 9.55 -15.06 -0.14 -7.30 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.59 -15.54 3.00 -172.31 -0.52 -16.06 16 10 C 0.17 4.30 5.27 -3.71 -0.02 4.28 16 11 C -0.14 -3.01 6.02 -26.61 -0.16 -3.17 16 12 C -0.09 -1.61 3.48 -26.69 -0.09 -1.70 16 13 C -0.11 -1.99 1.58 -90.50 -0.14 -2.14 16 14 H 0.11 2.26 5.71 -53.23 -0.30 1.96 16 15 C 0.15 2.12 2.63 -67.60 -0.18 1.94 16 16 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 17 C -0.14 -1.62 4.66 -26.61 -0.12 -1.74 16 18 C -0.12 -1.03 5.89 -26.69 -0.16 -1.19 16 19 C -0.14 -0.94 6.06 -26.84 -0.16 -1.11 16 20 C 0.10 0.81 5.85 -3.93 -0.02 0.79 16 21 N -0.59 -6.97 2.95 -165.48 -0.49 -7.46 16 22 C 0.45 6.20 6.50 -10.98 -0.07 6.13 16 23 O -0.46 -8.22 9.81 5.56 0.05 -8.16 16 24 C 0.25 2.65 4.59 36.01 0.17 2.81 16 25 F -0.18 -2.38 16.95 2.25 0.04 -2.34 16 26 F -0.19 -2.02 15.75 2.25 0.04 -1.98 16 27 C 0.15 3.27 5.70 -3.71 -0.02 3.25 16 28 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.10 2.77 5.91 -51.93 -0.31 2.46 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 1.32 7.99 -51.93 -0.42 0.91 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.89 5.21 -51.92 -0.27 0.62 16 34 H 0.04 0.70 6.30 -51.93 -0.33 0.37 16 35 H 0.08 1.06 6.87 -51.93 -0.36 0.70 16 36 H 0.07 0.97 6.04 -51.93 -0.31 0.65 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.08 0.49 5.46 -51.93 -0.28 0.20 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.13 0.79 7.79 -51.93 -0.40 0.38 16 44 H 0.01 0.29 6.65 -51.93 -0.35 -0.05 16 45 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -32.61 336.18 -8.14 -40.74 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.67 Total: -1.74 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.22 Total: 0.99 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.42 Total: -49.90 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.05 Total: -8.16 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.61 -8.14 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053064209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.756 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds