Wall clock time and date at job start Tue Mar 31 2020 11:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00398 * 2 1 4 4 H 1.48495 * 109.47498 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47036 * 299.99971 * 3 2 1 6 6 H 1.48499 * 109.46890 * 59.99455 * 3 2 1 7 7 C 1.38811 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00290 * 164.14385 * 7 2 1 9 9 N 1.36936 * 119.99812 * 344.14223 * 7 2 1 10 10 C 1.46928 * 120.63421 * 333.09543 * 9 7 2 11 11 C 1.53189 * 108.77688 * 233.63216 * 10 9 7 12 12 C 1.53046 * 109.31134 * 305.36176 * 11 10 9 13 13 C 1.53035 * 109.53818 * 61.36513 * 12 11 10 14 14 H 1.09003 * 109.52301 * 58.60355 * 13 12 11 15 15 C 1.52998 * 109.50111 * 178.68194 * 13 12 11 16 16 H 1.09008 * 109.58456 * 308.53709 * 15 13 12 17 17 C 1.53188 * 109.58431 * 68.95926 * 15 13 12 18 18 C 1.53040 * 109.31193 * 174.42205 * 17 15 13 19 19 C 1.53036 * 109.54121 * 298.63993 * 18 17 15 20 20 C 1.53190 * 109.31067 * 61.36427 * 19 18 17 21 21 N 1.46921 * 108.77748 * 305.36221 * 20 19 18 22 22 C 1.34774 * 120.63545 * 233.63449 * 21 20 19 23 23 O 1.21284 * 120.00238 * 177.61846 * 22 21 20 24 24 C 1.50699 * 119.99711 * 357.61854 * 22 21 20 25 25 F 1.39898 * 109.47548 * 55.00205 * 24 22 21 26 26 F 1.39900 * 109.47134 * 175.00478 * 24 22 21 27 27 C 1.46932 * 120.63060 * 153.11720 * 9 7 2 28 28 H 0.97001 * 119.99684 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58014 * 353.41996 * 10 9 7 30 30 H 1.08998 * 109.58607 * 113.69916 * 10 9 7 31 31 H 1.08999 * 109.50146 * 65.31240 * 11 10 9 32 32 H 1.09006 * 109.49369 * 185.41414 * 11 10 9 33 33 H 1.08997 * 109.45699 * 301.34825 * 12 11 10 34 34 H 1.09003 * 109.46002 * 181.38928 * 12 11 10 35 35 H 1.08993 * 109.50321 * 294.38024 * 17 15 13 36 36 H 1.09004 * 109.49853 * 54.44494 * 17 15 13 37 37 H 1.09005 * 109.45778 * 178.61387 * 18 17 15 38 38 H 1.09001 * 109.46068 * 58.66422 * 18 17 15 39 39 H 1.08997 * 109.49539 * 301.40807 * 19 18 17 40 40 H 1.09001 * 109.49650 * 181.31501 * 19 18 17 41 41 H 1.09001 * 109.59075 * 65.15535 * 20 19 18 42 42 H 1.09002 * 109.58382 * 185.43603 * 20 19 18 43 43 H 1.09008 * 109.47164 * 295.00105 * 24 22 21 44 44 H 1.08998 * 109.58258 * 6.58586 * 27 9 7 45 45 H 1.08995 * 109.58518 * 246.15716 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0594 -1.2201 -0.2550 9 7 1.3645 -2.3653 0.3251 10 6 0.1892 -2.3483 1.2066 11 6 0.4263 -3.3241 2.3635 12 6 0.7686 -4.7048 1.7989 13 6 2.0529 -4.6154 0.9715 14 1 2.8649 -4.2462 1.5980 15 6 2.4122 -6.0023 0.4348 16 1 2.4168 -6.7213 1.2541 17 6 1.3849 -6.4270 -0.6193 18 6 1.8253 -7.7495 -1.2512 19 6 3.1774 -7.5612 -1.9428 20 6 4.2249 -7.1494 -0.9036 21 7 3.7412 -5.9596 -0.1903 22 6 4.5017 -4.8497 -0.1112 23 8 4.0738 -3.8595 0.4431 24 6 5.8839 -4.8392 -0.7116 25 9 5.8095 -5.2046 -2.0600 26 9 6.4286 -3.5549 -0.6058 27 6 1.8343 -3.6542 -0.2011 28 1 -0.4850 0.8401 -0.0004 29 1 0.0427 -1.3427 1.6009 30 1 -0.6937 -2.6525 0.6443 31 1 1.2532 -2.9668 2.9772 32 1 -0.4756 -3.3931 2.9718 33 1 -0.0482 -5.0507 1.1654 34 1 0.9136 -5.4071 2.6199 35 1 0.4111 -6.5559 -0.1471 36 1 1.3166 -5.6598 -1.3906 37 1 1.0834 -8.0665 -1.9842 38 1 1.9168 -8.5099 -0.4755 39 1 3.0925 -6.7836 -2.7019 40 1 3.4793 -8.4973 -2.4125 41 1 4.3767 -7.9637 -0.1951 42 1 5.1658 -6.9205 -1.4042 43 1 6.5174 -5.5476 -0.1777 44 1 2.7733 -3.5103 -0.7356 45 1 1.0860 -4.0673 -0.8775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053064215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:53 Heat of formation + Delta-G solvation = -78.023796 kcal Electronic energy + Delta-G solvation = -29572.372129 eV Core-core repulsion = 25455.558175 eV Total energy + Delta-G solvation = -4116.813953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.18571 -47.19053 -40.82441 -37.50424 -36.98564 -33.55816 -32.96937 -31.59107 -30.20819 -28.59496 -27.89158 -25.16793 -24.78795 -23.75619 -21.98377 -21.44117 -20.96403 -19.40662 -18.88326 -17.86338 -17.44840 -17.19112 -16.53200 -15.72678 -15.17344 -14.98721 -14.75955 -14.59434 -14.32647 -13.96707 -13.87930 -13.73046 -13.41193 -13.28866 -13.11910 -12.99215 -12.74153 -12.33998 -12.27503 -12.10310 -11.85853 -11.56904 -11.16918 -11.10552 -10.84463 -10.73335 -10.64925 -10.40478 -10.35330 -10.07597 -9.92463 -9.64333 -9.35839 -9.20230 -8.76817 -8.37087 -8.24281 -6.41930 -5.57473 -2.96470 2.29652 2.62770 3.49985 3.57105 3.62544 3.66769 3.92278 4.53994 4.55775 4.66698 4.67913 4.77390 4.82820 5.03161 5.19511 5.21063 5.36819 5.47630 5.56886 5.63489 5.71645 5.77807 5.80638 5.86648 5.95033 5.98945 6.06548 6.21137 6.34087 6.38932 6.48542 6.59940 6.69320 6.84320 6.87612 7.04361 7.12004 7.23454 7.35561 7.60791 7.88115 8.02170 8.10412 8.68359 9.44956 10.09645 10.65152 11.51113 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.005850 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.750067 B = 4785.268365 C = 6141.508648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.008 4.008 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.066 0.934 9 N -0.585 5.585 10 C 0.168 3.832 11 C -0.139 4.139 12 C -0.106 4.106 13 C -0.113 4.113 14 H 0.109 0.891 15 C 0.157 3.843 16 H 0.069 0.931 17 C -0.139 4.139 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.094 3.906 21 N -0.595 5.595 22 C 0.447 3.553 23 O -0.438 6.438 24 C 0.253 3.747 25 F -0.190 7.190 26 F -0.174 7.174 27 C 0.163 3.837 28 H 0.249 0.751 29 H 0.089 0.911 30 H 0.012 0.988 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.127 0.873 44 H 0.064 0.936 45 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 -19.951 -0.452 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.205 4.205 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.084 0.916 9 N -0.307 5.307 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.144 4.144 13 C -0.133 4.133 14 H 0.127 0.873 15 C 0.055 3.945 16 H 0.087 0.913 17 C -0.177 4.177 18 C -0.157 4.157 19 C -0.171 4.171 20 C -0.029 4.029 21 N -0.331 5.331 22 C 0.230 3.770 23 O -0.309 6.309 24 C 0.196 3.804 25 F -0.172 7.172 26 F -0.155 7.155 27 C 0.037 3.963 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.144 0.856 44 H 0.082 0.918 45 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 8.030 -19.199 -0.186 20.812 hybrid contribution 0.416 0.766 -0.174 0.889 sum 8.446 -18.434 -0.360 20.280 Atomic orbital electron populations 1.70032 1.05109 1.24813 1.55906 1.24969 0.95282 0.98106 1.02128 0.86257 0.79533 0.84332 0.77028 1.20287 1.22022 1.21829 1.19311 0.92281 0.84578 1.39480 0.91609 1.43963 1.32425 1.01460 1.52826 1.20811 0.88164 0.98448 0.88412 1.22145 0.99506 0.96197 1.00028 1.21544 0.97357 0.97486 0.98055 1.22460 0.98293 0.92032 1.00542 0.87349 1.21483 0.79808 0.99399 0.93800 0.91319 1.22150 0.98681 0.97374 0.99541 1.21537 0.96640 0.97704 0.99792 1.21870 0.95276 1.01916 0.98041 1.21996 0.98535 0.87528 0.94806 1.47972 1.17830 1.12995 1.54260 1.20989 0.87139 0.84605 0.84278 1.91065 1.68395 1.32229 1.39200 1.21795 0.95856 0.82894 0.79845 1.92973 1.97291 1.90981 1.35915 1.93079 1.86082 1.40593 1.95787 1.21270 0.96691 0.86269 0.92030 0.94092 0.89298 0.96971 0.92913 0.93710 0.93124 0.94222 0.90533 0.90039 0.91733 0.92122 0.91025 0.90834 0.91189 0.89158 0.85581 0.91817 0.97738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 11.03 55.49 0.61 -27.40 16 2 C -0.01 -0.25 4.96 -17.43 -0.09 -0.34 16 3 Si 0.90 23.41 29.58 -169.99 -5.03 18.38 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 7 C -0.23 -6.75 9.61 -15.06 -0.14 -6.89 16 8 H 0.07 2.01 7.87 -52.49 -0.41 1.60 16 9 N -0.59 -15.79 3.00 -172.32 -0.52 -16.30 16 10 C 0.17 4.29 5.31 -3.71 -0.02 4.27 16 11 C -0.14 -2.88 6.08 -26.61 -0.16 -3.04 16 12 C -0.11 -1.87 4.96 -26.69 -0.13 -2.00 16 13 C -0.11 -2.07 1.57 -90.50 -0.14 -2.21 16 14 H 0.11 2.26 5.65 -53.32 -0.30 1.96 16 15 C 0.16 2.15 2.64 -67.60 -0.18 1.97 16 16 H 0.07 0.84 8.13 -51.92 -0.42 0.42 16 17 C -0.14 -1.75 4.65 -26.61 -0.12 -1.88 16 18 C -0.12 -1.11 5.88 -26.69 -0.16 -1.26 16 19 C -0.13 -1.14 6.08 -26.61 -0.16 -1.31 16 20 C 0.09 0.81 6.13 -3.71 -0.02 0.79 16 21 N -0.59 -7.45 2.95 -165.23 -0.49 -7.93 16 22 C 0.45 6.74 6.60 -10.99 -0.07 6.67 16 23 O -0.44 -8.80 9.95 5.55 0.06 -8.75 16 24 C 0.25 3.04 4.73 36.01 0.17 3.22 16 25 F -0.19 -2.29 15.11 2.25 0.03 -2.26 16 26 F -0.17 -2.73 16.95 2.25 0.04 -2.69 16 27 C 0.16 3.69 4.42 -3.71 -0.02 3.67 16 28 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.09 2.55 5.92 -51.93 -0.31 2.24 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.87 6.91 -51.93 -0.36 0.51 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.95 7.01 -51.93 -0.36 0.58 16 36 H 0.08 1.24 5.88 -51.93 -0.31 0.93 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.68 4.95 -51.93 -0.26 0.42 16 43 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 44 H 0.06 1.53 4.92 -51.80 -0.25 1.28 16 45 H 0.01 0.12 5.90 -51.93 -0.31 -0.19 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -34.17 336.37 -8.13 -42.30 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.65 Total: -2.06 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.25 Total: 1.65 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.39 Total: -51.63 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.06 Total: -8.75 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.95 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.03 Total: 18.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.17 -8.13 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053064215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.728 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds