Wall clock time and date at job start Tue Mar 31 2020 11:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39900 * 109.47446 * 2 1 4 4 F 1.39900 * 109.47172 * 239.99708 * 2 1 3 5 5 C 1.53000 * 109.47152 * 119.99966 * 2 1 3 6 6 C 1.50696 * 109.47229 * 179.97438 * 5 2 1 7 7 O 1.21283 * 120.00210 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00145 * 179.97438 * 6 5 2 9 9 C 1.46934 * 120.70997 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.92678 * 234.23515 * 9 8 6 11 11 C 1.53185 * 109.28004 * 304.68004 * 10 9 8 12 12 C 1.52072 * 109.67744 * 59.96224 * 11 10 9 13 13 C 1.54347 * 110.61232 * 64.19005 * 12 11 10 14 14 C 1.54464 * 102.85812 * 83.53698 * 13 12 11 15 15 N 1.47086 * 107.30398 * 21.47780 * 14 13 12 16 16 C 1.36934 * 125.63204 * 180.71467 * 15 14 13 17 17 H 1.07998 * 120.00325 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99566 * 0.02917 * 16 15 14 19 19 N 1.31613 * 120.00266 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99869 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47140 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47308 * 119.99655 * 20 18 16 23 23 H 1.48500 * 109.46794 * 239.99705 * 20 18 16 24 24 C 1.47582 * 108.74538 * 0.97799 * 15 14 13 25 25 C 1.47111 * 120.71180 * 179.97438 * 8 6 5 26 26 H 1.09002 * 109.47123 * 300.00340 * 1 2 3 27 27 H 1.09004 * 109.47306 * 60.00260 * 1 2 3 28 28 H 1.08998 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47257 * 59.99937 * 5 2 1 30 30 H 1.09002 * 109.46856 * 299.99856 * 5 2 1 31 31 H 1.08999 * 109.56314 * 114.40260 * 9 8 6 32 32 H 1.08997 * 109.56138 * 354.06903 * 9 8 6 33 33 H 1.09004 * 109.50034 * 184.73444 * 10 9 8 34 34 H 1.08998 * 109.50090 * 64.62372 * 10 9 8 35 35 H 1.09004 * 109.43431 * 299.89847 * 11 10 9 36 36 H 1.09002 * 109.39981 * 180.02562 * 11 10 9 37 37 H 1.08999 * 110.73474 * 325.19521 * 13 12 11 38 38 H 1.08998 * 110.89339 * 201.95098 * 13 12 11 39 39 H 1.08999 * 109.88093 * 262.05487 * 14 13 12 40 40 H 1.08998 * 110.00540 * 140.97610 * 14 13 12 41 41 H 0.96999 * 120.00420 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.37617 * 95.54583 * 24 15 14 43 43 H 1.08999 * 110.38190 * 217.89750 * 24 15 14 44 44 H 1.09001 * 109.57951 * 7.96491 * 25 8 6 45 45 H 1.09000 * 109.57830 * 247.57607 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2492 6 6 3.5469 -0.7218 1.2489 7 8 4.1534 -0.1966 0.3394 8 7 4.2208 -1.3051 2.2600 9 6 3.5020 -1.9454 3.3701 10 6 3.9976 -1.3504 4.6919 11 6 5.5195 -1.5033 4.7763 12 6 6.1728 -0.7719 3.6140 13 6 5.9080 0.7457 3.7091 14 6 7.0090 1.2266 4.6798 15 7 8.0793 0.2177 4.6618 16 6 9.2321 0.2645 5.3992 17 1 9.9599 -0.5290 5.3146 18 6 9.4654 1.3318 6.2556 19 7 8.5787 2.2990 6.3584 20 14 11.0384 1.3961 7.2611 21 1 11.8640 0.1976 6.9657 22 1 11.8005 2.6213 6.9102 23 1 10.7009 1.4201 8.7070 24 6 7.7085 -0.8501 3.7130 25 6 5.6918 -1.3152 2.2752 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6767 -1.7488 1.2493 30 1 1.6766 -0.2073 2.1392 31 1 3.6935 -3.0183 3.3583 32 1 2.4325 -1.7627 3.2659 33 1 3.5322 -1.8770 5.5251 34 1 3.7350 -0.2935 4.7364 35 1 5.7808 -2.5606 4.7324 36 1 5.8742 -1.0809 5.7164 37 1 4.9180 0.9395 4.1219 38 1 6.0180 1.2213 2.7346 39 1 6.6018 1.3167 5.6869 40 1 7.4014 2.1890 4.3514 41 1 8.7418 3.0450 6.9565 42 1 8.1615 -0.6663 2.7387 43 1 8.0150 -1.8229 4.0976 44 1 6.0698 -0.6867 1.4689 45 1 6.0514 -2.3358 2.1444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054192254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:43 Heat of formation + Delta-G solvation = -114.106911 kcal Electronic energy + Delta-G solvation = -28246.528713 eV Core-core repulsion = 24128.150078 eV Total energy + Delta-G solvation = -4118.378635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.95997 -46.94462 -40.43080 -38.43303 -35.89723 -33.64493 -32.86685 -31.88018 -30.32741 -28.96555 -28.48946 -25.70453 -25.26933 -23.60953 -22.27994 -22.01312 -20.19113 -19.46331 -18.15730 -17.71947 -17.47847 -16.92122 -16.60160 -15.93898 -15.43473 -15.30748 -14.91743 -14.61003 -14.11746 -13.88157 -13.75494 -13.44897 -13.30742 -13.27291 -13.22241 -13.04906 -12.87256 -12.65081 -12.35884 -12.27695 -12.06513 -11.95316 -11.73348 -11.28973 -11.01830 -10.95300 -10.87479 -10.67600 -10.57006 -10.10501 -10.03286 -9.91796 -9.79065 -9.65108 -9.55487 -8.56712 -8.50738 -6.78385 -5.67746 -3.00854 2.55837 2.84130 3.41182 3.46780 3.49199 3.54524 3.80174 4.07941 4.16238 4.52206 4.59193 4.73354 4.80557 4.91623 4.98849 5.05598 5.18143 5.19739 5.28978 5.35974 5.43103 5.44066 5.54503 5.58966 5.73024 5.86664 5.89855 5.97148 6.00913 6.12986 6.32651 6.38531 6.47361 6.55945 6.65762 6.70983 6.82722 6.96104 7.37162 7.60736 7.69285 7.87470 8.12088 8.29399 9.25719 9.86100 10.52961 11.43781 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003164 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.673424 B = 8847.280709 C = 9101.699594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.306 3.694 3 F -0.191 7.191 4 F -0.194 7.194 5 C -0.189 4.189 6 C 0.514 3.486 7 O -0.524 6.524 8 N -0.604 5.604 9 C 0.107 3.893 10 C -0.137 4.137 11 C -0.096 4.096 12 C -0.085 4.085 13 C -0.131 4.131 14 C 0.181 3.819 15 N -0.603 5.603 16 C -0.225 4.225 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.148 3.852 25 C 0.130 3.870 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.251 0.749 42 H 0.019 0.981 43 H 0.039 0.961 44 H 0.093 0.907 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 -9.815 -7.689 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.269 3.731 3 F -0.172 7.172 4 F -0.175 7.175 5 C -0.229 4.229 6 C 0.300 3.700 7 O -0.399 6.399 8 N -0.337 5.337 9 C -0.016 4.016 10 C -0.175 4.175 11 C -0.134 4.134 12 C -0.087 4.087 13 C -0.169 4.169 14 C 0.056 3.944 15 N -0.329 5.329 16 C -0.354 4.354 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.741 3.259 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.022 3.978 25 C 0.008 3.992 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.139 -9.375 -8.054 22.782 hybrid contribution 0.887 0.157 0.647 1.109 sum -18.251 -9.217 -7.407 21.747 Atomic orbital electron populations 1.22799 0.91368 1.05400 1.05665 1.20620 0.92904 0.76227 0.83334 1.93062 1.90545 1.36809 1.96753 1.93039 1.90601 1.80779 1.53037 1.22888 0.95707 1.04694 0.99659 1.20076 0.88933 0.78627 0.82345 1.90789 1.69677 1.44074 1.35388 1.48076 1.07488 1.56215 1.21966 1.21788 0.95945 0.97215 0.86666 1.22009 0.97601 1.01959 0.95940 1.21223 0.93101 0.99581 0.99490 1.21400 0.97286 0.96565 0.93448 1.22846 0.99808 0.93718 1.00506 1.21141 0.85766 0.91831 0.95675 1.44499 1.19925 1.21316 1.47203 1.19095 0.94747 1.05185 1.16340 0.90471 1.24790 0.98473 0.97072 1.00203 1.69985 1.34593 1.11432 1.40894 0.86063 0.82683 0.77348 0.79792 1.20552 1.21818 1.21853 1.21385 0.90092 0.92887 0.93485 1.21515 0.77811 1.01253 0.98642 0.89112 0.89692 0.89235 0.86164 0.85966 0.91185 0.90376 0.90909 0.91031 0.92439 0.90190 0.92422 0.92654 0.93848 0.94205 0.93905 0.96301 0.94244 0.88913 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 9.38 37.15 0.35 -0.79 16 2 C 0.31 3.23 1.85 -26.73 -0.05 3.18 16 3 F -0.19 -2.71 16.15 2.25 0.04 -2.67 16 4 F -0.19 -2.60 16.14 2.25 0.04 -2.56 16 5 C -0.19 -1.68 3.64 -27.88 -0.10 -1.78 16 6 C 0.51 7.11 7.47 -10.99 -0.08 7.02 16 7 O -0.52 -9.68 14.26 5.56 0.08 -9.60 16 8 N -0.60 -7.70 2.86 -173.17 -0.50 -8.20 16 9 C 0.11 0.98 6.32 -3.71 -0.02 0.96 16 10 C -0.14 -1.52 5.91 -26.54 -0.16 -1.68 16 11 C -0.10 -1.43 4.66 -27.11 -0.13 -1.55 16 12 C -0.09 -1.44 0.55 -154.08 -0.08 -1.53 16 13 C -0.13 -2.54 5.68 -25.26 -0.14 -2.68 16 14 C 0.18 4.45 5.01 -2.95 -0.01 4.43 16 15 N -0.60 -15.39 3.39 -170.32 -0.58 -15.96 16 16 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.31 10.30 55.49 0.57 -26.74 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.15 3.05 6.15 -2.88 -0.02 3.03 16 25 C 0.13 1.95 5.12 -4.08 -0.02 1.93 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.12 0.68 7.93 -51.93 -0.41 0.26 16 30 H 0.12 0.80 7.71 -51.93 -0.40 0.39 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.48 5.94 -51.93 -0.31 0.17 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.88 6.31 -51.93 -0.33 0.55 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.44 7.83 -51.93 -0.41 1.04 16 37 H 0.06 1.03 6.09 -51.93 -0.32 0.72 16 38 H 0.05 1.13 7.88 -51.93 -0.41 0.72 16 39 H 0.04 1.17 7.40 -51.93 -0.38 0.78 16 40 H 0.04 1.11 7.48 -51.93 -0.39 0.73 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 43 H 0.04 0.78 8.02 -51.93 -0.42 0.36 16 44 H 0.09 1.61 6.85 -51.93 -0.36 1.26 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -34.73 352.08 -7.84 -42.57 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.05 Total: -3.13 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.72 Total: 3.73 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.50 Total: -50.90 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.73 -7.84 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054192254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.541 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds