Wall clock time and date at job start Tue Mar 31 2020 11:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39900 * 109.47446 * 2 1 4 4 F 1.39900 * 109.47172 * 239.99708 * 2 1 3 5 5 C 1.53000 * 109.47152 * 119.99966 * 2 1 3 6 6 C 1.50696 * 109.47229 * 179.97438 * 5 2 1 7 7 O 1.21283 * 120.00210 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00145 * 179.97438 * 6 5 2 9 9 C 1.46934 * 120.70997 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.92678 * 234.23515 * 9 8 6 11 11 C 1.53185 * 109.28004 * 304.68004 * 10 9 8 12 12 C 1.52072 * 109.67744 * 59.96224 * 11 10 9 13 13 C 1.54347 * 110.61232 * 64.19005 * 12 11 10 14 14 C 1.54464 * 102.85812 * 83.53698 * 13 12 11 15 15 N 1.47086 * 107.30398 * 21.47780 * 14 13 12 16 16 C 1.36934 * 125.63204 * 180.71467 * 15 14 13 17 17 H 1.07998 * 120.00325 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99566 * 0.02917 * 16 15 14 19 19 N 1.31613 * 120.00266 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99869 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47140 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47308 * 119.99655 * 20 18 16 23 23 H 1.48500 * 109.46794 * 239.99705 * 20 18 16 24 24 C 1.47582 * 108.74538 * 0.97799 * 15 14 13 25 25 C 1.47111 * 120.71180 * 179.97438 * 8 6 5 26 26 H 1.09002 * 109.47123 * 300.00340 * 1 2 3 27 27 H 1.09004 * 109.47306 * 60.00260 * 1 2 3 28 28 H 1.08998 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47257 * 59.99937 * 5 2 1 30 30 H 1.09002 * 109.46856 * 299.99856 * 5 2 1 31 31 H 1.08999 * 109.56314 * 114.40260 * 9 8 6 32 32 H 1.08997 * 109.56138 * 354.06903 * 9 8 6 33 33 H 1.09004 * 109.50034 * 184.73444 * 10 9 8 34 34 H 1.08998 * 109.50090 * 64.62372 * 10 9 8 35 35 H 1.09004 * 109.43431 * 299.89847 * 11 10 9 36 36 H 1.09002 * 109.39981 * 180.02562 * 11 10 9 37 37 H 1.08999 * 110.73474 * 325.19521 * 13 12 11 38 38 H 1.08998 * 110.89339 * 201.95098 * 13 12 11 39 39 H 1.08999 * 109.88093 * 262.05487 * 14 13 12 40 40 H 1.08998 * 110.00540 * 140.97610 * 14 13 12 41 41 H 0.96999 * 120.00420 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.37617 * 95.54583 * 24 15 14 43 43 H 1.08999 * 110.38190 * 217.89750 * 24 15 14 44 44 H 1.09001 * 109.57951 * 7.96491 * 25 8 6 45 45 H 1.09000 * 109.57830 * 247.57607 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2492 6 6 3.5469 -0.7218 1.2489 7 8 4.1534 -0.1966 0.3394 8 7 4.2208 -1.3051 2.2600 9 6 3.5020 -1.9454 3.3701 10 6 3.9976 -1.3504 4.6919 11 6 5.5195 -1.5033 4.7763 12 6 6.1728 -0.7719 3.6140 13 6 5.9080 0.7457 3.7091 14 6 7.0090 1.2266 4.6798 15 7 8.0793 0.2177 4.6618 16 6 9.2321 0.2645 5.3992 17 1 9.9599 -0.5290 5.3146 18 6 9.4654 1.3318 6.2556 19 7 8.5787 2.2990 6.3584 20 14 11.0384 1.3961 7.2611 21 1 11.8640 0.1976 6.9657 22 1 11.8005 2.6213 6.9102 23 1 10.7009 1.4201 8.7070 24 6 7.7085 -0.8501 3.7130 25 6 5.6918 -1.3152 2.2752 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6767 -1.7488 1.2493 30 1 1.6766 -0.2073 2.1392 31 1 3.6935 -3.0183 3.3583 32 1 2.4325 -1.7627 3.2659 33 1 3.5322 -1.8770 5.5251 34 1 3.7350 -0.2935 4.7364 35 1 5.7808 -2.5606 4.7324 36 1 5.8742 -1.0809 5.7164 37 1 4.9180 0.9395 4.1219 38 1 6.0180 1.2213 2.7346 39 1 6.6018 1.3167 5.6869 40 1 7.4014 2.1890 4.3514 41 1 8.7418 3.0450 6.9565 42 1 8.1615 -0.6663 2.7387 43 1 8.0150 -1.8229 4.0976 44 1 6.0698 -0.6867 1.4689 45 1 6.0514 -2.3358 2.1444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054192254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:43 Heat of formation + Delta-G solvation = -136.667173 kcal Electronic energy + Delta-G solvation = -28247.506999 eV Core-core repulsion = 24128.150078 eV Total energy + Delta-G solvation = -4119.356921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.82029 -47.84852 -41.59534 -39.79779 -37.29834 -34.89326 -34.07649 -33.08044 -31.89443 -30.55441 -29.51371 -27.34653 -26.36487 -25.31233 -23.28825 -22.90907 -22.05547 -20.59648 -19.54597 -18.66513 -18.51615 -18.37603 -17.67347 -16.88964 -16.81356 -16.50117 -16.35654 -16.08549 -15.67138 -14.98762 -14.82991 -14.73205 -14.53832 -14.27222 -14.21086 -14.06144 -13.92614 -13.63319 -13.45840 -13.35587 -13.26348 -13.03454 -13.02843 -12.88482 -12.82272 -12.34762 -12.11782 -12.03337 -11.89440 -11.84781 -11.74889 -11.55858 -11.33903 -11.18725 -10.81027 -10.72694 -9.58734 -8.90781 -7.85841 -5.21543 1.43908 1.45497 1.55731 1.58115 1.91483 2.48394 2.85588 3.17469 3.32306 3.34243 3.53352 3.54719 3.70637 3.81981 3.91648 4.00841 4.17195 4.23785 4.32364 4.37780 4.42285 4.49198 4.57231 4.63352 4.69979 4.73662 4.79347 4.87156 4.89650 4.91971 4.94942 4.97748 5.09258 5.13978 5.25772 5.43275 5.48676 5.50593 5.55687 5.63887 5.74907 6.17290 6.41408 7.08437 7.13663 7.75893 8.41764 9.24905 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003164 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.673424 B = 8847.280709 C = 9101.699594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.283 3.717 3 F -0.221 7.221 4 F -0.217 7.217 5 C -0.180 4.180 6 C 0.502 3.498 7 O -0.583 6.583 8 N -0.603 5.603 9 C 0.104 3.896 10 C -0.131 4.131 11 C -0.094 4.094 12 C -0.068 4.068 13 C -0.114 4.114 14 C 0.194 3.806 15 N -0.622 5.622 16 C -0.239 4.239 17 H 0.084 0.916 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.296 1.296 23 H -0.290 1.290 24 C 0.141 3.859 25 C 0.137 3.863 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.015 0.985 40 H -0.008 1.008 41 H 0.245 0.755 42 H 0.012 0.988 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.284 -12.776 -7.019 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.247 3.753 3 F -0.202 7.202 4 F -0.198 7.198 5 C -0.219 4.219 6 C 0.291 3.709 7 O -0.463 6.463 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.169 4.169 11 C -0.132 4.132 12 C -0.069 4.069 13 C -0.152 4.152 14 C 0.069 3.931 15 N -0.349 5.349 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.808 3.192 21 H -0.188 1.188 22 H -0.223 1.223 23 H -0.217 1.217 24 C 0.015 3.985 25 C 0.014 3.986 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.136 0.864 29 H 0.183 0.817 30 H 0.173 0.827 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.033 0.967 40 H 0.011 0.989 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.847 -12.387 -7.379 26.176 hybrid contribution 1.776 1.076 0.418 2.118 sum -20.071 -11.311 -6.961 24.068 Atomic orbital electron populations 1.22816 0.87313 1.07517 1.06507 1.21496 0.95708 0.74863 0.83265 1.93001 1.91218 1.39138 1.96865 1.92988 1.91198 1.81093 1.54560 1.23036 0.91396 1.07543 0.99961 1.21043 0.91131 0.77271 0.81460 1.90770 1.71309 1.46512 1.37744 1.48192 1.06351 1.56016 1.22939 1.22145 0.97831 0.98037 0.83662 1.21986 0.94433 1.01868 0.98600 1.21192 0.96018 0.99906 0.96064 1.21281 0.94770 0.94791 0.96080 1.22637 0.98716 0.95804 0.98074 1.20817 0.86907 0.90210 0.95179 1.44782 1.19604 1.22769 1.47704 1.19513 0.95715 1.05258 1.16328 0.89836 1.25675 1.01816 0.96907 1.01741 1.70217 1.36466 1.11922 1.41613 0.84988 0.78874 0.77456 0.77893 1.18817 1.22298 1.21654 1.21601 0.93022 0.91938 0.91903 1.21209 0.80105 1.01536 0.95758 0.86966 0.90251 0.86423 0.81735 0.82748 0.88628 0.85990 0.87785 0.92466 0.90340 0.94067 0.90477 0.94241 0.96726 0.98944 0.94536 0.97019 0.92922 0.92070 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.38 71.98 0.68 -0.82 16 2 C 0.28 5.38 1.85 30.59 0.06 5.44 16 3 F -0.22 -6.25 16.15 44.97 0.73 -5.52 16 4 F -0.22 -5.67 16.14 44.97 0.73 -4.94 16 5 C -0.18 -2.43 3.64 29.85 0.11 -2.32 16 6 C 0.50 12.85 7.47 87.66 0.65 13.50 16 7 O -0.58 -21.88 14.26 -3.04 -0.04 -21.93 16 8 N -0.60 -13.58 2.86 -820.17 -2.35 -15.92 16 9 C 0.10 1.33 6.32 86.36 0.55 1.88 16 10 C -0.13 -2.38 5.91 30.72 0.18 -2.19 16 11 C -0.09 -2.60 4.66 30.35 0.14 -2.46 16 12 C -0.07 -2.26 0.55 -51.90 -0.03 -2.29 16 13 C -0.11 -4.59 5.68 31.55 0.18 -4.41 16 14 C 0.19 10.16 5.01 86.77 0.44 10.59 16 15 N -0.62 -33.04 3.39 -692.77 -2.35 -35.39 16 16 C -0.24 -13.74 10.28 84.03 0.86 -12.87 16 17 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 19 N -0.95 -59.16 10.30 21.65 0.22 -58.94 16 20 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 C 0.14 5.89 6.15 86.54 0.53 6.42 16 25 C 0.14 3.97 5.12 86.02 0.44 4.41 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.17 0.76 7.93 -2.39 -0.02 0.74 16 30 H 0.15 1.12 7.71 -2.39 -0.02 1.10 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.12 0.58 5.94 -2.39 -0.01 0.57 16 33 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.06 1.22 6.31 -2.39 -0.02 1.21 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.04 1.47 7.83 -2.39 -0.02 1.45 16 37 H 0.08 2.78 6.09 -2.39 -0.01 2.77 16 38 H 0.04 1.70 7.88 -2.39 -0.02 1.68 16 39 H 0.01 0.83 7.40 -2.39 -0.02 0.82 16 40 H -0.01 -0.47 7.48 -2.39 -0.02 -0.49 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.01 0.52 8.00 -2.38 -0.02 0.50 16 43 H 0.05 2.05 8.02 -2.39 -0.02 2.03 16 44 H 0.06 2.18 6.85 -2.39 -0.02 2.17 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -84.62 352.08 5.20 -79.42 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 0.98 Total: 3.06 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.25 Total: 11.32 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.47 Total: -110.25 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 9 Polarization: -11.91 SS G_CDS: 1.45 Total: -10.46 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -84.62 5.20 -79.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054192254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.245 kcal (2) G-P(sol) polarization free energy of solvation -84.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds