Wall clock time and date at job start Tue Mar 31 2020 12:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.58097 * 2 1 4 4 C 1.53191 * 109.58823 * 120.42610 * 2 1 3 5 5 C 1.53041 * 109.30901 * 174.42278 * 4 2 1 6 6 C 1.53036 * 109.53825 * 298.63415 * 5 4 2 7 7 H 1.09002 * 109.49324 * 181.35428 * 6 5 4 8 8 N 1.46498 * 109.49892 * 301.41264 * 6 5 4 9 9 C 1.34774 * 120.00063 * 204.99645 * 8 6 5 10 10 O 1.21284 * 120.00133 * 0.02562 * 9 8 6 11 11 C 1.50708 * 120.00082 * 180.02562 * 9 8 6 12 12 C 1.52997 * 109.47203 * 180.02562 * 11 9 8 13 13 C 1.53788 * 113.61251 * 274.14074 * 12 11 9 14 14 C 1.53957 * 87.01657 * 220.05122 * 13 12 11 15 15 F 1.39904 * 113.53229 * 270.81251 * 14 13 12 16 16 F 1.39897 * 113.66975 * 139.93635 * 14 13 12 17 17 C 1.53779 * 113.61424 * 176.53153 * 12 11 9 18 18 C 1.52761 * 109.38270 * 61.24435 * 6 5 4 19 19 N 1.46921 * 109.58489 * 239.71905 * 2 1 3 20 20 C 1.36935 * 120.63295 * 6.57981 * 19 2 1 21 21 H 1.08002 * 120.00283 * 330.62836 * 20 19 2 22 22 C 1.38811 * 120.00198 * 150.63384 * 20 19 2 23 23 N 1.31616 * 120.00024 * 336.38087 * 22 20 19 24 24 Si 1.86800 * 120.00033 * 156.10549 * 22 20 19 25 25 H 1.48502 * 109.47261 * 89.99857 * 24 22 20 26 26 H 1.48510 * 109.47197 * 209.99881 * 24 22 20 27 27 H 1.48493 * 109.47211 * 329.99946 * 24 22 20 28 28 H 1.08998 * 109.46610 * 180.28550 * 1 2 3 29 29 H 1.09003 * 109.47011 * 300.28140 * 1 2 3 30 30 H 1.09001 * 109.47323 * 60.28458 * 1 2 3 31 31 H 1.08999 * 109.49577 * 294.37145 * 4 2 1 32 32 H 1.08996 * 109.49502 * 54.47345 * 4 2 1 33 33 H 1.09003 * 109.45807 * 58.66068 * 5 4 2 34 34 H 1.09002 * 109.45324 * 178.62935 * 5 4 2 35 35 H 0.96998 * 119.99845 * 25.00981 * 8 6 5 36 36 H 1.08996 * 109.46634 * 300.00635 * 11 9 8 37 37 H 1.09005 * 109.46345 * 60.00517 * 11 9 8 38 38 H 1.08992 * 112.85035 * 45.33381 * 12 11 9 39 39 H 1.08995 * 113.61237 * 334.56582 * 13 12 11 40 40 H 1.08993 * 113.61641 * 105.47041 * 13 12 11 41 41 H 1.08995 * 113.61442 * 254.52714 * 17 12 11 42 42 H 1.09005 * 113.61102 * 25.43188 * 17 12 11 43 43 H 1.09004 * 109.50658 * 185.70309 * 18 6 5 44 44 H 1.09000 * 109.43099 * 65.42238 * 18 6 5 45 45 H 0.97006 * 120.00113 * 353.98189 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5676 -0.8493 1.1690 6 6 3.9569 -1.6655 -0.0657 7 1 5.0412 -1.7698 -0.1056 8 7 3.3407 -2.9923 0.0110 9 6 3.8972 -4.0325 -0.6407 10 8 4.9085 -3.8702 -1.2903 11 6 3.2629 -5.3974 -0.5623 12 6 4.0869 -6.3907 -1.3841 13 6 3.7080 -6.4210 -2.8742 14 6 3.8785 -7.9495 -2.8038 15 9 5.1814 -8.3795 -3.0775 16 9 2.9092 -8.6565 -3.5234 17 6 3.5700 -7.8366 -1.3014 18 6 3.4644 -0.9501 -1.3223 19 7 2.0225 -0.6980 -1.1954 20 6 1.1536 -1.1107 -2.1699 21 1 0.1376 -1.3713 -1.9125 22 6 1.5786 -1.1942 -3.4887 23 7 2.6015 -0.4738 -3.8974 24 14 0.7037 -2.3348 -4.6816 25 1 -0.4040 -1.6016 -5.3455 26 1 1.6663 -2.8116 -5.7070 27 1 0.1532 -3.4980 -3.9407 28 1 -0.3632 -1.0277 0.0051 29 1 -0.3633 0.5182 0.8875 30 1 -0.3634 0.5094 -0.8925 31 1 1.7661 -0.1694 2.1366 32 1 1.6031 -1.7269 1.2891 33 1 4.0061 0.1462 1.0994 34 1 3.9378 -1.3475 2.0650 35 1 2.5320 -3.1222 0.5307 36 1 3.2314 -5.7241 0.4770 37 1 2.2488 -5.3500 -0.9593 38 1 5.1586 -6.2993 -1.2078 39 1 2.6837 -6.1046 -3.0708 40 1 4.4354 -5.9289 -3.5198 41 1 4.1862 -8.4856 -0.6792 42 1 2.5078 -7.9079 -1.0673 43 1 3.6504 -1.5769 -2.1945 44 1 3.9928 -0.0030 -1.4311 45 1 3.0032 0.1792 -3.3030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071621899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:32 Heat of formation + Delta-G solvation = -106.401613 kcal Electronic energy + Delta-G solvation = -28287.613694 eV Core-core repulsion = 24169.569186 eV Total energy + Delta-G solvation = -4118.044508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.78236 -47.12333 -39.80512 -38.36481 -37.19820 -34.23736 -32.97174 -31.27212 -29.82897 -29.41315 -26.28540 -26.23052 -24.91393 -23.39892 -22.10881 -20.96375 -20.40081 -19.79871 -18.79097 -17.43927 -17.12922 -16.72165 -16.52950 -16.19289 -15.48041 -15.34729 -14.48794 -14.46853 -14.15335 -13.99468 -13.58798 -13.53611 -13.45427 -13.37672 -13.36502 -13.06967 -12.59068 -12.55656 -12.28081 -11.79632 -11.39971 -11.36650 -11.27506 -11.19040 -11.15051 -10.88757 -10.80230 -10.68194 -10.41180 -10.38951 -10.08775 -9.98883 -9.77224 -9.36089 -9.20955 -8.49547 -8.32448 -6.82407 -6.01040 -3.21640 3.12277 3.45826 3.47536 3.50512 3.61807 3.66261 3.81435 4.25280 4.35124 4.42150 4.57807 5.04463 5.14070 5.21491 5.26100 5.32599 5.34365 5.37501 5.38543 5.43195 5.55765 5.57798 5.68437 5.81491 5.87604 5.91962 5.99444 6.04403 6.19879 6.24944 6.26475 6.33433 6.38217 6.49421 6.52557 6.66329 6.96306 7.01638 7.15977 7.23658 8.03224 8.04795 8.60303 8.74448 9.13880 9.87646 10.32567 11.25299 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.004794 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.005381 B = 5839.700048 C = 7066.143312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.125 3.875 7 H 0.076 0.924 8 N -0.702 5.702 9 C 0.513 3.487 10 O -0.546 6.546 11 C -0.129 4.129 12 C -0.084 4.084 13 C -0.158 4.158 14 C 0.250 3.750 15 F -0.182 7.182 16 F -0.194 7.194 17 C -0.161 4.161 18 C 0.142 3.858 19 N -0.589 5.589 20 C -0.345 4.345 21 H 0.058 0.942 22 C -0.021 4.021 23 N -0.913 5.913 24 Si 1.058 2.942 25 H -0.295 1.295 26 H -0.286 1.286 27 H -0.293 1.293 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.395 0.605 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.021 0.979 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -10.017 11.102 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 H 0.039 0.961 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.019 3.981 7 H 0.094 0.906 8 N -0.353 5.353 9 C 0.299 3.701 10 O -0.423 6.423 11 C -0.169 4.169 12 C -0.103 4.103 13 C -0.196 4.196 14 C 0.214 3.786 15 F -0.163 7.163 16 F -0.175 7.175 17 C -0.199 4.199 18 C 0.015 3.985 19 N -0.313 5.313 20 C -0.475 4.475 21 H 0.076 0.924 22 C -0.224 4.224 23 N -0.553 5.553 24 Si 0.888 3.112 25 H -0.223 1.223 26 H -0.212 1.212 27 H -0.220 1.220 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.230 0.770 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.039 0.961 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.770 -10.519 9.031 13.885 hybrid contribution -0.485 0.496 1.630 1.772 sum 0.285 -10.022 10.661 14.635 Atomic orbital electron populations 1.21765 0.95901 1.01243 1.00088 1.20446 0.93120 0.93331 0.87074 0.96067 1.22052 0.95068 1.00745 0.99042 1.21687 0.97056 1.00092 0.96837 1.21491 0.96955 0.82192 0.97467 0.90598 1.45843 1.29413 1.08537 1.51495 1.20360 0.84589 0.86115 0.79080 1.90685 1.25491 1.85253 1.40919 1.21589 1.00782 0.92627 1.01951 1.22108 1.01555 0.92232 0.94391 1.24215 1.05695 0.90941 0.98761 1.22216 0.72350 0.91565 0.92486 1.93005 1.36986 1.91369 1.94902 1.92997 1.62302 1.81474 1.80703 1.24175 1.04516 0.98268 0.92935 1.21248 0.84807 0.96656 0.95824 1.44101 1.02246 1.65229 1.19766 1.19841 0.95828 1.43748 0.88045 0.92426 1.25736 1.00000 1.00864 0.95756 1.70738 1.25465 1.21057 1.38050 0.83644 0.75394 0.76106 0.76060 1.22263 1.21154 1.21999 0.92926 0.94506 0.92084 0.92814 0.92555 0.91240 0.92819 0.77003 0.88794 0.88320 0.87002 0.86913 0.88271 0.88943 0.86952 0.89448 0.96146 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.95 37.16 0.30 -2.06 16 2 C 0.17 3.17 3.50 -67.60 -0.24 2.94 16 3 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.13 -1.96 5.21 -26.61 -0.14 -2.10 16 5 C -0.12 -1.76 5.59 -26.69 -0.15 -1.91 16 6 C 0.13 2.25 2.81 -68.04 -0.19 2.05 16 7 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 8 N -0.70 -11.48 4.91 -53.90 -0.26 -11.74 16 9 C 0.51 8.61 7.79 -10.98 -0.09 8.52 16 10 O -0.55 -11.28 15.45 5.55 0.09 -11.19 16 11 C -0.13 -1.56 5.52 -27.88 -0.15 -1.71 16 12 C -0.08 -1.02 3.09 -89.81 -0.28 -1.30 16 13 C -0.16 -2.18 7.43 -25.82 -0.19 -2.37 16 14 C 0.25 3.20 3.28 -25.83 -0.08 3.11 16 15 F -0.18 -2.56 17.38 2.25 0.04 -2.52 16 16 F -0.19 -2.69 17.41 2.25 0.04 -2.65 16 17 C -0.16 -1.57 7.43 -25.92 -0.19 -1.77 16 18 C 0.14 3.21 4.25 -3.93 -0.02 3.19 16 19 N -0.59 -13.45 2.75 -165.04 -0.45 -13.90 16 20 C -0.35 -8.91 8.48 -15.06 -0.13 -9.04 16 21 H 0.06 1.48 6.28 -52.49 -0.33 1.15 16 22 C -0.02 -0.57 4.71 -17.43 -0.08 -0.65 16 23 N -0.91 -27.14 12.45 55.49 0.69 -26.45 16 24 Si 1.06 25.05 29.98 -169.99 -5.10 19.95 16 25 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 28 H 0.05 0.94 7.44 -51.93 -0.39 0.56 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.83 6.40 -51.93 -0.33 0.50 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 5.71 6.77 -40.82 -0.28 5.43 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.15 7.88 -51.93 -0.41 0.74 16 38 H 0.11 1.48 7.73 -51.93 -0.40 1.08 16 39 H 0.11 1.53 7.92 -51.93 -0.41 1.12 16 40 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.09 2.36 6.40 -51.93 -0.33 2.03 16 44 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 45 H 0.27 8.07 6.69 -40.82 -0.27 7.80 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -31.25 358.49 -8.14 -39.39 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.95 Total: 6.82 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.63 Total: -3.10 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.03 Total: -52.09 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.08 Total: -5.17 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.10 Total: 19.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.25 -8.14 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071621899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.015 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds