Wall clock time and date at job start Tue Mar 31 2020 12:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58545 * 2 1 4 4 C 1.53200 * 109.58493 * 120.27597 * 2 1 3 5 5 C 1.53073 * 109.29369 * 174.28277 * 4 2 1 6 6 C 1.53033 * 109.65737 * 298.84749 * 5 4 2 7 7 H 1.09003 * 109.50078 * 301.34705 * 6 5 4 8 8 N 1.46506 * 109.49699 * 181.25428 * 6 5 4 9 9 C 1.34775 * 119.99881 * 155.15971 * 8 6 5 10 10 O 1.21276 * 120.00383 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99668 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.46890 * 180.02562 * 11 9 8 13 13 C 1.53781 * 113.61632 * 274.13693 * 12 11 9 14 14 C 1.53956 * 87.01991 * 220.05027 * 13 12 11 15 15 F 1.39897 * 113.53497 * 270.80742 * 14 13 12 16 16 F 1.39905 * 113.66287 * 139.93220 * 14 13 12 17 17 C 1.53773 * 87.11298 * 25.36286 * 14 13 12 18 18 C 1.53195 * 109.31551 * 61.30427 * 6 5 4 19 19 N 1.46918 * 109.58968 * 239.70945 * 2 1 3 20 20 C 1.36934 * 120.63229 * 6.58899 * 19 2 1 21 21 H 1.08000 * 119.99532 * 330.15942 * 20 19 2 22 22 C 1.38812 * 120.00489 * 150.16681 * 20 19 2 23 23 N 1.31625 * 119.99667 * 344.49199 * 22 20 19 24 24 Si 1.86795 * 120.00181 * 164.49810 * 22 20 19 25 25 H 1.48499 * 109.47246 * 359.97438 * 24 22 20 26 26 H 1.48509 * 109.47175 * 119.99847 * 24 22 20 27 27 H 1.48502 * 109.47056 * 239.99360 * 24 22 20 28 28 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46745 * 60.00546 * 1 2 3 30 30 H 1.08995 * 109.47379 * 300.00836 * 1 2 3 31 31 H 1.09004 * 109.49446 * 294.37720 * 4 2 1 32 32 H 1.08997 * 109.49336 * 54.47031 * 4 2 1 33 33 H 1.09001 * 109.44585 * 178.75401 * 5 4 2 34 34 H 1.08999 * 109.33812 * 58.86915 * 5 4 2 35 35 H 0.97001 * 119.99393 * 335.16240 * 8 6 5 36 36 H 1.08994 * 109.47477 * 300.00400 * 11 9 8 37 37 H 1.08998 * 109.46775 * 60.00669 * 11 9 8 38 38 H 1.08997 * 112.85325 * 45.33799 * 12 11 9 39 39 H 1.09006 * 113.61352 * 334.57041 * 13 12 11 40 40 H 1.09000 * 113.61551 * 105.46661 * 13 12 11 41 41 H 1.09000 * 113.61614 * 220.08955 * 17 14 13 42 42 H 1.09005 * 113.61606 * 89.18296 * 17 14 13 43 43 H 1.09003 * 109.58778 * 185.57520 * 18 6 5 44 44 H 1.08999 * 109.58269 * 65.15061 * 18 6 5 45 45 H 0.96999 * 119.99631 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 1.2465 5 6 3.5675 -0.8493 1.1693 6 6 3.9569 -1.6655 -0.0652 7 1 3.4983 -2.6528 -0.0081 8 7 5.4143 -1.8051 -0.1193 9 6 5.9678 -2.8454 -0.7734 10 8 5.2595 -3.6658 -1.3176 11 6 7.4669 -2.9886 -0.8295 12 6 7.8298 -4.2433 -1.6264 13 6 7.8490 -5.5268 -0.7796 14 6 9.1032 -5.9358 -1.5733 15 9 8.8169 -6.6532 -2.7397 16 9 10.0907 -6.5423 -0.7895 17 6 9.3437 -4.4365 -1.8156 18 6 3.4651 -0.9453 -1.3247 19 7 2.0226 -0.6981 -1.1952 20 6 1.1538 -1.1109 -2.1698 21 1 0.1399 -1.3786 -1.9113 22 6 1.5761 -1.1853 -3.4900 23 7 2.6866 -0.5837 -3.8606 24 14 0.5684 -2.1391 -4.7407 25 1 -0.6263 -2.7184 -4.0756 26 1 0.1357 -1.2252 -5.8283 27 1 1.3951 -3.2323 -5.3124 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8899 31 1 1.7659 -0.1639 2.1371 32 1 1.6029 -1.7235 1.2937 33 1 3.9376 -1.3471 2.0656 34 1 4.0059 0.1462 1.0996 35 1 5.9808 -1.1488 0.3157 36 1 7.8976 -2.1130 -1.3151 37 1 7.8618 -3.0739 0.1828 38 1 7.2589 -4.3381 -2.5500 39 1 8.0407 -5.3490 0.2786 40 1 6.9909 -6.1765 -0.9520 41 1 9.6906 -4.2071 -2.8232 42 1 9.9448 -3.9599 -1.0411 43 1 3.6520 -1.5691 -2.1988 44 1 3.9904 0.0037 -1.4314 45 1 2.9819 -0.6360 -4.7831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071621900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:36 Heat of formation + Delta-G solvation = -105.921102 kcal Electronic energy + Delta-G solvation = -27391.544611 eV Core-core repulsion = 23273.520940 eV Total energy + Delta-G solvation = -4118.023671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.91439 -47.25842 -39.77758 -38.23468 -37.25808 -34.36812 -32.81130 -31.20819 -29.97628 -29.49196 -26.43146 -25.99282 -24.97924 -23.36865 -22.25652 -20.82684 -20.11895 -19.86649 -19.22141 -17.54376 -16.88262 -16.69774 -16.41993 -16.31592 -15.60908 -15.22748 -15.02939 -14.26687 -14.13230 -13.81898 -13.79983 -13.60950 -13.50812 -13.37993 -13.32494 -12.80817 -12.71402 -12.42074 -12.36766 -11.91969 -11.46772 -11.36068 -11.27244 -11.12256 -10.99565 -10.87860 -10.71467 -10.56558 -10.50899 -10.39339 -10.24517 -9.95582 -9.75740 -9.45052 -9.31146 -8.52331 -8.41483 -6.60068 -5.74022 -3.18638 3.02741 3.33162 3.41719 3.47218 3.50777 3.51656 3.66988 4.12599 4.19017 4.29164 4.54500 4.93138 5.06056 5.19062 5.24830 5.31659 5.34487 5.36981 5.39935 5.50727 5.54756 5.57327 5.64728 5.69254 5.71227 5.96698 6.09882 6.15679 6.26671 6.30466 6.38987 6.45366 6.50565 6.62300 6.74543 6.95779 7.04584 7.12658 7.32245 7.73498 7.86560 7.93995 8.50853 8.65967 9.25343 9.89455 10.44930 11.34235 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.003500 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.734265 B = 7998.975958 C = 9370.593599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.722 5.722 9 C 0.507 3.493 10 O -0.531 6.531 11 C -0.128 4.128 12 C -0.087 4.087 13 C -0.157 4.157 14 C 0.251 3.749 15 F -0.180 7.180 16 F -0.195 7.195 17 C -0.162 4.162 18 C 0.169 3.831 19 N -0.584 5.584 20 C -0.253 4.253 21 H 0.070 0.930 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.288 1.288 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.392 0.608 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.670 -2.999 10.321 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.373 5.373 9 C 0.292 3.708 10 O -0.407 6.407 11 C -0.169 4.169 12 C -0.105 4.105 13 C -0.195 4.195 14 C 0.214 3.786 15 F -0.160 7.160 16 F -0.176 7.176 17 C -0.200 4.200 18 C 0.042 3.958 19 N -0.307 5.307 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.215 1.215 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.224 0.776 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.034 0.966 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.201 -3.628 9.735 16.025 hybrid contribution 0.042 -0.279 -0.563 0.630 sum 12.243 -3.908 9.172 15.789 Atomic orbital electron populations 1.21802 0.96014 1.01399 1.00187 1.20481 0.93070 0.93535 0.87069 0.95819 1.22052 0.94365 1.01292 0.98911 1.21674 0.97386 0.99612 0.96721 1.21964 0.78020 1.00783 0.98147 0.90126 1.46099 1.08554 1.27006 1.55635 1.20432 0.90120 0.81508 0.78690 1.90750 1.63524 1.42097 1.44280 1.21599 0.94013 0.99343 1.01902 1.22157 0.94423 0.93406 1.00542 1.24188 0.96424 0.98415 1.00509 1.22189 0.88601 0.87948 0.79839 1.93024 1.93563 1.80403 1.49039 1.92994 1.64349 1.86135 1.74151 1.24185 0.98680 0.91763 1.05365 1.21058 0.83552 0.96769 0.94377 1.44027 1.02661 1.64859 1.19176 1.19175 0.95094 1.37976 0.85975 0.91225 1.25075 0.97794 0.99277 0.97038 1.70016 1.24131 1.43708 1.16594 0.86280 0.79657 0.79700 0.81478 1.20205 1.21792 1.21493 0.92808 0.91991 0.94366 0.92691 0.92130 0.93177 0.92353 0.77554 0.88247 0.88879 0.86599 0.87325 0.88406 0.88696 0.87000 0.88922 0.96608 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.95 37.16 0.30 -2.25 16 2 C 0.17 3.34 3.49 -67.60 -0.24 3.11 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.11 5.38 -26.59 -0.14 -2.25 16 5 C -0.12 -1.80 5.35 -26.68 -0.14 -1.94 16 6 C 0.12 2.17 2.61 -67.81 -0.18 2.00 16 7 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 8 N -0.72 -10.76 5.08 -53.69 -0.27 -11.03 16 9 C 0.51 7.89 7.80 -10.98 -0.09 7.80 16 10 O -0.53 -10.94 15.45 5.56 0.09 -10.86 16 11 C -0.13 -1.29 5.52 -27.88 -0.15 -1.44 16 12 C -0.09 -0.94 3.09 -89.80 -0.28 -1.21 16 13 C -0.16 -1.66 7.43 -25.83 -0.19 -1.85 16 14 C 0.25 2.74 3.28 -25.83 -0.08 2.65 16 15 F -0.18 -2.36 17.38 2.25 0.04 -2.32 16 16 F -0.20 -2.27 17.41 2.25 0.04 -2.23 16 17 C -0.16 -1.38 7.43 -25.92 -0.19 -1.58 16 18 C 0.17 4.02 4.86 -3.71 -0.02 4.00 16 19 N -0.58 -14.40 2.99 -164.77 -0.49 -14.90 16 20 C -0.25 -6.89 8.57 -15.06 -0.13 -7.02 16 21 H 0.07 1.86 6.24 -52.49 -0.33 1.53 16 22 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 23 N -0.90 -26.51 11.23 55.49 0.62 -25.89 16 24 Si 0.90 22.37 29.58 -169.99 -5.03 17.34 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H 0.05 1.02 7.42 -51.93 -0.39 0.64 16 29 H 0.06 1.25 7.64 -51.93 -0.40 0.85 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 4.38 8.60 -40.82 -0.35 4.03 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 38 H 0.12 1.56 7.73 -51.93 -0.40 1.16 16 39 H 0.11 0.93 7.92 -51.93 -0.41 0.52 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.09 2.61 6.15 -51.93 -0.32 2.29 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -32.83 363.14 -8.33 -41.16 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.18 Total: 3.13 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.62 Total: 0.11 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.14 Total: -51.81 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.08 Total: -4.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.83 -8.33 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071621900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.757 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds