Wall clock time and date at job start Tue Mar 31 2020 12:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58999 * 2 1 4 4 C 1.53194 * 109.58845 * 239.71283 * 2 1 3 5 5 C 1.53040 * 109.31618 * 185.57756 * 4 2 1 6 6 C 1.53038 * 109.53280 * 61.36783 * 5 4 2 7 7 H 1.09001 * 109.49951 * 178.65130 * 6 5 4 8 8 N 1.46497 * 109.49957 * 58.58735 * 6 5 4 9 9 C 1.34776 * 120.00161 * 154.99605 * 8 6 5 10 10 O 1.21290 * 120.00216 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00166 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47218 * 180.02562 * 11 9 8 13 13 C 1.53785 * 113.61554 * 274.14141 * 12 11 9 14 14 C 1.53959 * 87.01901 * 220.04746 * 13 12 11 15 15 F 1.39895 * 113.53622 * 270.80706 * 14 13 12 16 16 F 1.39898 * 113.66577 * 139.92685 * 14 13 12 17 17 C 1.53780 * 113.61602 * 176.53063 * 12 11 9 18 18 C 1.53195 * 109.31536 * 298.63455 * 6 5 4 19 19 N 1.46917 * 108.77327 * 54.63728 * 18 6 5 20 20 C 1.36938 * 120.63140 * 126.37623 * 19 18 6 21 21 H 1.08001 * 120.00127 * 209.03626 * 20 19 18 22 22 C 1.38808 * 120.00459 * 29.02398 * 20 19 18 23 23 N 1.31628 * 119.99629 * 15.02097 * 22 20 19 24 24 Si 1.86796 * 120.00412 * 195.01777 * 22 20 19 25 25 H 1.48504 * 109.46822 * 90.00533 * 24 22 20 26 26 H 1.48504 * 109.47240 * 210.00020 * 24 22 20 27 27 H 1.48489 * 109.47233 * 330.00292 * 24 22 20 28 28 H 1.09000 * 109.47400 * 180.28148 * 1 2 3 29 29 H 1.08998 * 109.47113 * 300.28525 * 1 2 3 30 30 H 1.09003 * 109.46693 * 60.28391 * 1 2 3 31 31 H 1.09004 * 109.49074 * 65.62747 * 4 2 1 32 32 H 1.08999 * 109.49933 * 305.53343 * 4 2 1 33 33 H 1.08999 * 109.46337 * 301.35163 * 5 4 2 34 34 H 1.08996 * 109.46230 * 181.38787 * 5 4 2 35 35 H 0.96997 * 120.00158 * 334.99921 * 8 6 5 36 36 H 1.08997 * 109.47262 * 300.00313 * 11 9 8 37 37 H 1.08999 * 109.46736 * 60.00249 * 11 9 8 38 38 H 1.09000 * 112.84980 * 45.33108 * 12 11 9 39 39 H 1.09001 * 113.61020 * 334.56614 * 13 12 11 40 40 H 1.08998 * 113.61685 * 105.47019 * 13 12 11 41 41 H 1.08998 * 113.61819 * 254.53046 * 17 12 11 42 42 H 1.08999 * 113.61149 * 25.35195 * 17 12 11 43 43 H 1.08999 * 109.58726 * 174.42482 * 18 6 5 44 44 H 1.09002 * 109.58806 * 294.84827 * 18 6 5 45 45 H 0.96993 * 119.99984 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 6 3.9568 -1.6659 0.0614 7 1 5.0411 -1.7704 0.1013 8 7 3.3404 -2.9924 -0.0185 9 6 3.8969 -4.0343 0.6305 10 8 4.9078 -3.8736 1.2812 11 6 3.2625 -5.3989 0.5488 12 6 4.0858 -6.3941 1.3690 13 6 5.2582 -7.0133 0.5899 14 6 4.9073 -8.3450 1.2783 15 9 5.5603 -8.5306 2.5015 16 9 5.0055 -9.4564 0.4343 17 6 3.4747 -7.8043 1.4206 18 6 3.4650 -0.9487 1.3226 19 7 2.0226 -0.7011 1.1936 20 6 1.1536 -1.1161 2.1672 21 1 0.1360 -1.3706 1.9100 22 6 1.5806 -1.2101 3.4846 23 7 2.7038 -0.6323 3.8551 24 14 0.5615 -2.1565 4.7316 25 1 0.9959 -3.5764 4.7504 26 1 0.7520 -1.5627 6.0794 27 1 -0.8733 -2.0826 4.3565 28 1 -0.3634 -1.0276 0.0050 29 1 -0.3633 0.5182 0.8874 30 1 -0.3633 0.5094 -0.8926 31 1 1.7660 -0.1642 -2.1370 32 1 1.6030 -1.7237 -1.2935 33 1 4.0062 0.1486 -1.0991 34 1 3.9378 -1.3423 -2.0685 35 1 2.5318 -3.1210 -0.5386 36 1 2.2485 -5.3525 0.9459 37 1 3.2309 -5.7231 -0.4914 38 1 4.3687 -6.0047 2.3470 39 1 5.1066 -7.0265 -0.4895 40 1 6.2317 -6.6157 0.8768 41 1 3.0104 -8.0442 2.3771 42 1 2.8335 -8.0336 0.5694 43 1 3.6517 -1.5746 2.1952 44 1 3.9903 0.0002 1.4318 45 1 3.0020 -0.6976 4.7757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071621901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:39 Heat of formation + Delta-G solvation = -103.847539 kcal Electronic energy + Delta-G solvation = -28020.734920 eV Core-core repulsion = 23902.801165 eV Total energy + Delta-G solvation = -4117.933755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.85689 -47.20107 -39.71351 -38.28493 -37.12358 -34.08116 -32.74496 -31.17565 -29.96296 -29.38560 -26.35320 -26.18425 -24.99116 -23.41048 -22.18010 -20.82434 -20.30497 -19.81267 -18.72906 -17.48640 -16.95723 -16.61950 -16.28639 -16.23958 -15.40751 -15.18504 -14.93837 -14.20575 -14.07527 -13.95940 -13.79501 -13.53265 -13.43373 -13.28571 -13.20690 -12.83842 -12.65230 -12.53864 -12.29406 -11.85591 -11.33543 -11.24125 -11.17972 -11.16186 -10.95829 -10.89958 -10.84454 -10.73378 -10.48094 -10.39443 -10.33621 -9.97243 -9.55932 -9.46641 -9.24442 -8.45941 -8.33960 -6.61232 -5.75469 -3.20121 3.19904 3.36413 3.40715 3.42282 3.45267 3.63967 3.78208 4.20731 4.27899 4.42103 4.48699 5.09454 5.18984 5.27544 5.29747 5.34463 5.35652 5.40875 5.47107 5.49654 5.55943 5.58856 5.66827 5.73186 5.85735 5.99878 6.09960 6.14282 6.25995 6.31276 6.33057 6.42927 6.51748 6.59291 6.69545 6.90561 7.03219 7.11369 7.40389 7.70492 7.82637 8.13269 8.48498 8.83088 9.22920 9.87357 10.43511 11.32257 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.004242 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.893134 B = 6598.703563 C = 7777.542148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.074 0.926 8 N -0.701 5.701 9 C 0.512 3.488 10 O -0.546 6.546 11 C -0.129 4.129 12 C -0.085 4.085 13 C -0.156 4.156 14 C 0.250 3.750 15 F -0.180 7.180 16 F -0.196 7.196 17 C -0.163 4.163 18 C 0.162 3.838 19 N -0.583 5.583 20 C -0.251 4.251 21 H 0.068 0.932 22 C 0.006 3.994 23 N -0.899 5.899 24 Si 0.896 3.104 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.280 1.280 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.394 0.606 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.023 0.977 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -9.732 -11.216 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.092 0.908 8 N -0.352 5.352 9 C 0.298 3.702 10 O -0.424 6.424 11 C -0.169 4.169 12 C -0.103 4.103 13 C -0.194 4.194 14 C 0.214 3.786 15 F -0.161 7.161 16 F -0.177 7.177 17 C -0.201 4.201 18 C 0.035 3.965 19 N -0.306 5.306 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.543 5.543 24 Si 0.726 3.274 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.229 0.771 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.041 0.959 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.247 -9.610 -10.558 14.331 hybrid contribution -0.790 -0.661 0.591 1.187 sum 0.457 -10.271 -9.967 14.319 Atomic orbital electron populations 1.21794 0.96153 1.01212 1.00128 1.20457 0.92848 0.93623 0.87246 0.95863 1.22060 0.95173 1.00631 0.99038 1.21686 0.96976 1.00142 0.96853 1.21751 0.96882 0.82046 0.98092 0.90808 1.45849 1.29292 1.08617 1.51411 1.20309 0.84657 0.86015 0.79230 1.90682 1.25538 1.85299 1.40899 1.21577 1.01062 0.92862 1.01415 1.22136 0.94529 0.92486 1.01176 1.24177 1.02293 0.91444 1.01468 1.22210 0.95704 0.83480 0.77209 1.93017 1.82904 1.95944 1.44224 1.92988 1.97018 1.57106 1.70564 1.24189 0.94391 0.95902 1.05603 1.21186 0.83646 0.97049 0.94593 1.44047 1.02738 1.64672 1.19143 1.19088 0.94643 1.38083 0.86214 0.91431 1.25058 0.97663 0.99644 0.96945 1.69984 1.23185 1.44255 1.16872 0.86395 0.79731 0.79984 0.81269 1.21527 1.21811 1.20561 0.92960 0.92100 0.94461 0.92956 0.92676 0.91249 0.93135 0.77144 0.88128 0.89120 0.86697 0.87378 0.88511 0.88745 0.86997 0.88421 0.95914 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 37.16 0.30 -2.07 16 2 C 0.16 3.14 3.50 -67.60 -0.24 2.90 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.96 5.21 -26.61 -0.14 -2.10 16 5 C -0.12 -1.79 5.59 -26.69 -0.15 -1.94 16 6 C 0.12 2.16 2.81 -67.81 -0.19 1.97 16 7 H 0.07 1.41 7.58 -51.93 -0.39 1.01 16 8 N -0.70 -11.54 4.91 -53.69 -0.26 -11.80 16 9 C 0.51 8.67 7.80 -10.98 -0.09 8.59 16 10 O -0.55 -11.40 15.45 5.55 0.09 -11.31 16 11 C -0.13 -1.57 5.52 -27.88 -0.15 -1.72 16 12 C -0.08 -1.04 3.09 -89.81 -0.28 -1.32 16 13 C -0.16 -1.76 7.43 -25.82 -0.19 -1.95 16 14 C 0.25 2.95 3.28 -25.82 -0.08 2.86 16 15 F -0.18 -2.49 17.38 2.25 0.04 -2.45 16 16 F -0.20 -2.41 17.41 2.25 0.04 -2.37 16 17 C -0.16 -1.63 7.43 -25.92 -0.19 -1.83 16 18 C 0.16 3.76 4.89 -3.71 -0.02 3.74 16 19 N -0.58 -13.41 2.91 -164.78 -0.48 -13.89 16 20 C -0.25 -6.41 8.61 -15.06 -0.13 -6.54 16 21 H 0.07 1.69 6.20 -52.49 -0.33 1.36 16 22 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 23 N -0.90 -26.02 11.14 55.49 0.62 -25.40 16 24 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.05 0.91 7.40 -51.93 -0.38 0.52 16 29 H 0.06 1.18 7.66 -51.93 -0.40 0.78 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.80 6.40 -51.93 -0.33 0.47 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 5.68 6.77 -40.82 -0.28 5.40 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 38 H 0.11 1.73 7.73 -51.93 -0.40 1.32 16 39 H 0.11 1.00 7.92 -51.93 -0.41 0.59 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.11 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.10 2.69 6.06 -51.93 -0.31 2.37 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -30.80 359.44 -8.22 -39.02 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.01 Total: 5.66 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.64 Total: 0.67 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.13 Total: -51.09 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.08 Total: -4.82 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.80 -8.22 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071621901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.824 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds