Wall clock time and date at job start Tue Mar 31 2020 12:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.58930 * 2 1 4 4 C 1.53198 * 109.70452 * 239.63841 * 2 1 3 5 5 C 1.53036 * 109.31195 * 185.50797 * 4 2 1 6 6 C 1.53045 * 109.53873 * 61.37026 * 5 4 2 7 7 H 1.08997 * 109.49465 * 58.58500 * 6 5 4 8 8 N 1.46494 * 109.49622 * 178.65083 * 6 5 4 9 9 C 1.34778 * 120.00144 * 204.99753 * 8 6 5 10 10 O 1.21287 * 119.99753 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00514 * 179.97438 * 9 8 6 12 12 C 1.53002 * 109.47103 * 179.97438 * 11 9 8 13 13 C 1.53773 * 113.61786 * 272.49760 * 12 11 9 14 14 C 1.53780 * 87.08361 * 220.01992 * 13 12 11 15 15 F 1.39891 * 113.61409 * 270.88303 * 14 13 12 16 16 F 1.39901 * 113.61301 * 139.98118 * 14 13 12 17 17 C 1.53783 * 113.61175 * 174.99754 * 12 11 9 18 18 C 1.53630 * 109.23759 * 298.50895 * 6 5 4 19 19 N 1.46918 * 108.54220 * 54.85780 * 18 6 5 20 20 C 1.36941 * 120.63232 * 126.36858 * 19 18 6 21 21 H 1.07994 * 120.00393 * 208.55081 * 20 19 18 22 22 C 1.38816 * 119.99536 * 28.54549 * 20 19 18 23 23 N 1.31613 * 120.00218 * 16.98039 * 22 20 19 24 24 Si 1.86799 * 119.99860 * 196.97718 * 22 20 19 25 25 H 1.48503 * 109.47272 * 85.23172 * 24 22 20 26 26 H 1.48503 * 109.47293 * 325.23317 * 24 22 20 27 27 H 1.48504 * 109.47360 * 205.23419 * 24 22 20 28 28 H 1.09002 * 109.47236 * 299.72079 * 1 2 3 29 29 H 1.08999 * 109.47537 * 59.71657 * 1 2 3 30 30 H 1.09003 * 109.47456 * 179.71838 * 1 2 3 31 31 H 1.08997 * 109.49556 * 305.46212 * 4 2 1 32 32 H 1.09002 * 109.48855 * 65.52550 * 4 2 1 33 33 H 1.09002 * 109.46086 * 181.38709 * 5 4 2 34 34 H 1.08999 * 109.46209 * 301.35943 * 5 4 2 35 35 H 0.96996 * 120.00498 * 24.99783 * 8 6 5 36 36 H 1.08999 * 109.46964 * 300.00353 * 11 9 8 37 37 H 1.08996 * 109.46770 * 60.00076 * 11 9 8 38 38 H 1.09006 * 112.84885 * 43.80695 * 12 11 9 39 39 H 1.09000 * 113.61431 * 334.57311 * 13 12 11 40 40 H 1.09007 * 113.61644 * 105.46755 * 13 12 11 41 41 H 1.08993 * 113.61758 * 254.53248 * 17 12 11 42 42 H 1.08998 * 113.61251 * 25.43997 * 17 12 11 43 43 H 1.08998 * 109.73951 * 295.11612 * 18 6 5 44 44 H 1.09000 * 109.65838 * 174.54822 * 18 6 5 45 45 H 0.97003 * 120.00219 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0465 -0.7290 -1.2445 5 6 3.5705 -0.8445 -1.1673 6 6 3.9601 -1.6609 0.0672 7 1 3.5036 -2.6489 0.0088 8 7 5.4176 -1.7981 0.1226 9 6 5.9721 -2.8397 0.7738 10 8 5.2645 -3.6636 1.3137 11 6 7.4714 -2.9812 0.8304 12 6 7.8355 -4.2378 1.6237 13 6 7.9491 -3.9987 3.1385 14 6 9.1697 -4.9338 3.1151 15 9 8.8466 -6.2818 3.3032 16 9 10.2193 -4.5058 3.9351 17 6 9.3428 -4.5421 1.6381 18 6 3.4659 -0.9375 1.3292 19 7 2.0225 -0.6981 1.1954 20 6 1.1533 -1.1125 2.1690 21 1 0.1355 -1.3660 1.9120 22 6 1.5806 -1.2068 3.4864 23 7 2.6840 -0.5977 3.8656 24 14 0.5895 -2.1981 4.7211 25 1 0.9889 -3.6263 4.6439 26 1 -0.8572 -2.0712 4.4106 27 1 0.8487 -1.6849 6.0903 28 1 -0.3634 0.5095 0.8925 29 1 -0.3634 0.5182 -0.8874 30 1 -0.3634 -1.0277 -0.0051 31 1 1.6079 -1.7258 -1.2904 32 1 1.7683 -0.1676 -2.1364 33 1 3.9430 -1.3410 -2.0633 34 1 4.0071 0.1518 -1.0962 35 1 5.9836 -1.1395 -0.3094 36 1 7.8670 -3.0629 -0.1820 37 1 7.9007 -2.1065 1.3188 38 1 7.2190 -5.0976 1.3611 39 1 8.1927 -2.9691 3.4009 40 1 7.1073 -4.3936 3.7074 41 1 9.6262 -5.3757 0.9956 42 1 9.9674 -3.6611 1.4903 43 1 3.9859 0.0145 1.4353 44 1 3.6536 -1.5585 2.2051 45 1 2.9824 -0.6633 4.7863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071621902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:43 Heat of formation + Delta-G solvation = -105.512695 kcal Electronic energy + Delta-G solvation = -27489.779810 eV Core-core repulsion = 23371.773848 eV Total energy + Delta-G solvation = -4118.005962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.87298 -47.21372 -39.76657 -38.21844 -37.25463 -34.36508 -32.81605 -31.20292 -29.97461 -29.48537 -26.37851 -25.98108 -24.98316 -23.34777 -22.25020 -20.82235 -20.08970 -19.87294 -19.21897 -17.50569 -16.87322 -16.65283 -16.45033 -16.24651 -15.56769 -15.40317 -14.73662 -14.38531 -14.08685 -13.91165 -13.79849 -13.55308 -13.47637 -13.37623 -13.18871 -12.88094 -12.66833 -12.40578 -12.34748 -11.90596 -11.48704 -11.32519 -11.25342 -11.12336 -10.96849 -10.88369 -10.70562 -10.51904 -10.50707 -10.40033 -10.25801 -9.96194 -9.75086 -9.45897 -9.31144 -8.51901 -8.40815 -6.62123 -5.74118 -3.17252 3.02621 3.36754 3.43138 3.48702 3.50120 3.51499 3.71409 4.15794 4.23882 4.30747 4.54817 4.92908 5.09356 5.24448 5.26126 5.32058 5.33814 5.36728 5.40135 5.52639 5.55699 5.58710 5.67398 5.70571 5.79571 5.96611 6.09777 6.16491 6.26483 6.30277 6.38782 6.45324 6.49816 6.62017 6.74194 6.95926 7.04324 7.12222 7.31876 7.72901 7.86266 7.93960 8.49950 8.66013 9.24981 9.89540 10.44496 11.34006 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003758 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.132690 B = 7448.961878 C = 8977.899465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.722 5.722 9 C 0.507 3.493 10 O -0.531 6.531 11 C -0.129 4.129 12 C -0.086 4.086 13 C -0.158 4.158 14 C 0.251 3.749 15 F -0.181 7.181 16 F -0.195 7.195 17 C -0.161 4.161 18 C 0.169 3.831 19 N -0.584 5.584 20 C -0.254 4.254 21 H 0.071 0.929 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.286 1.286 26 H -0.279 1.279 27 H -0.292 1.292 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.392 0.608 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.016 0.984 44 H 0.094 0.906 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.723 -2.537 -9.751 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.099 0.901 8 N -0.373 5.373 9 C 0.292 3.708 10 O -0.407 6.407 11 C -0.169 4.169 12 C -0.105 4.105 13 C -0.196 4.196 14 C 0.214 3.786 15 F -0.161 7.161 16 F -0.175 7.175 17 C -0.199 4.199 18 C 0.042 3.958 19 N -0.307 5.307 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.213 1.213 26 H -0.205 1.205 27 H -0.218 1.218 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.224 0.776 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.034 0.966 44 H 0.112 0.888 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.255 -3.150 -9.142 15.610 hybrid contribution 0.037 -0.233 0.664 0.705 sum 12.292 -3.383 -8.478 15.311 Atomic orbital electron populations 1.21801 0.95997 1.01387 1.00220 1.20482 0.93068 0.93516 0.87095 0.95829 1.22041 0.94358 1.01312 0.98887 1.21673 0.97367 0.99617 0.96734 1.22061 0.77983 1.00786 0.98139 0.90083 1.46097 1.08563 1.26841 1.55788 1.20440 0.90126 0.81568 0.78635 1.90754 1.63578 1.41946 1.44398 1.21603 0.93998 0.98924 1.02352 1.22142 0.94545 0.99403 0.94407 1.24179 0.96587 1.00544 0.98321 1.22154 0.86963 0.78352 0.91106 1.93013 1.92675 1.34379 1.96075 1.92997 1.59958 1.89071 1.75517 1.24184 0.98663 1.03949 0.93131 1.21152 0.83453 0.96745 0.94410 1.44056 1.02590 1.64891 1.19206 1.19146 0.94790 1.38172 0.86202 0.91174 1.25036 0.97902 0.99331 0.96927 1.70009 1.24613 1.43113 1.16685 0.86367 0.79648 0.80489 0.80624 1.21275 1.20488 1.21821 0.91978 0.94355 0.92805 0.92096 0.92727 0.93167 0.92346 0.77561 0.88571 0.88561 0.86809 0.87027 0.88267 0.88878 0.86975 0.96604 0.88832 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.95 37.16 0.30 -2.25 16 2 C 0.16 3.34 3.49 -67.60 -0.24 3.10 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.10 5.38 -26.61 -0.14 -2.25 16 5 C -0.12 -1.80 5.35 -26.69 -0.14 -1.94 16 6 C 0.12 2.16 2.62 -67.58 -0.18 1.99 16 7 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 8 N -0.72 -10.76 5.08 -53.47 -0.27 -11.03 16 9 C 0.51 7.89 7.80 -10.99 -0.09 7.81 16 10 O -0.53 -10.98 15.42 5.55 0.09 -10.89 16 11 C -0.13 -1.29 5.54 -27.88 -0.15 -1.45 16 12 C -0.09 -0.93 3.13 -89.81 -0.28 -1.22 16 13 C -0.16 -1.89 7.42 -25.92 -0.19 -2.08 16 14 C 0.25 2.89 3.28 -25.92 -0.08 2.81 16 15 F -0.18 -2.42 17.38 2.25 0.04 -2.38 16 16 F -0.19 -2.43 17.41 2.25 0.04 -2.39 16 17 C -0.16 -1.37 7.43 -25.92 -0.19 -1.56 16 18 C 0.17 4.01 4.91 -3.49 -0.02 3.99 16 19 N -0.58 -14.39 2.98 -164.51 -0.49 -14.89 16 20 C -0.25 -6.92 8.59 -15.06 -0.13 -7.05 16 21 H 0.07 1.87 6.21 -52.49 -0.33 1.54 16 22 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 23 N -0.90 -26.44 11.23 55.49 0.62 -25.82 16 24 Si 0.90 22.40 29.59 -169.99 -5.03 17.37 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 4.38 8.60 -40.82 -0.35 4.03 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.81 7.84 -51.93 -0.41 0.40 16 38 H 0.11 1.44 7.67 -51.93 -0.40 1.04 16 39 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16 40 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 2.62 6.09 -51.93 -0.32 2.31 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -32.78 362.99 -8.33 -41.11 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.17 Total: 3.44 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.63 Total: 0.01 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.14 Total: -51.74 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.08 Total: -4.77 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.78 -8.33 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071621902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.407 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds