Wall clock time and date at job start Tue Mar 31 2020 12:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.58971 * 2 1 4 4 C 1.53167 * 109.59373 * 239.56408 * 2 1 3 5 5 C 1.53036 * 109.33416 * 185.57350 * 4 2 1 6 6 C 1.53040 * 109.52544 * 61.36696 * 5 4 2 7 7 H 1.09001 * 109.49889 * 58.59822 * 6 5 4 8 8 N 1.46500 * 109.49419 * 178.66024 * 6 5 4 9 9 C 1.34783 * 119.99793 * 205.00243 * 8 6 5 10 10 O 1.21280 * 119.99953 * 359.97438 * 9 8 6 11 11 C 1.50701 * 119.99759 * 180.02562 * 9 8 6 12 12 C 1.52999 * 112.85019 * 48.80608 * 11 9 8 13 13 C 1.53777 * 113.61457 * 277.49588 * 11 9 8 14 14 C 1.53784 * 87.08138 * 220.02101 * 13 11 9 15 15 F 1.39895 * 113.61446 * 270.88352 * 14 13 11 16 16 F 1.39903 * 113.61284 * 139.98199 * 14 13 11 17 17 C 1.53782 * 87.08052 * 25.43345 * 14 13 11 18 18 C 1.53186 * 109.31765 * 298.64564 * 6 5 4 19 19 N 1.46925 * 109.58700 * 120.28233 * 2 1 3 20 20 C 1.36932 * 120.63255 * 353.41891 * 19 2 1 21 21 H 1.07999 * 119.99853 * 28.99589 * 20 19 2 22 22 C 1.38811 * 120.00424 * 209.00379 * 20 19 2 23 23 N 1.31625 * 119.99687 * 15.02491 * 22 20 19 24 24 Si 1.86798 * 120.00352 * 195.02785 * 22 20 19 25 25 H 1.48499 * 109.46990 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47521 * 119.99713 * 24 22 20 27 27 H 1.48506 * 109.46967 * 239.99753 * 24 22 20 28 28 H 1.08998 * 109.47045 * 299.72321 * 1 2 3 29 29 H 1.08999 * 109.46702 * 59.71456 * 1 2 3 30 30 H 1.08997 * 109.47306 * 179.71732 * 1 2 3 31 31 H 1.08998 * 109.47950 * 65.61795 * 4 2 1 32 32 H 1.09008 * 109.49635 * 305.53708 * 4 2 1 33 33 H 1.09004 * 109.45625 * 301.35672 * 5 4 2 34 34 H 1.08995 * 109.46322 * 181.38604 * 5 4 2 35 35 H 0.96994 * 120.00259 * 25.00003 * 8 6 5 36 36 H 1.08995 * 109.47362 * 69.66594 * 12 11 9 37 37 H 1.09002 * 109.47008 * 189.66687 * 12 11 9 38 38 H 1.09004 * 109.47291 * 309.66032 * 12 11 9 39 39 H 1.08999 * 113.61387 * 334.56761 * 13 11 9 40 40 H 1.09003 * 113.61529 * 105.47502 * 13 11 9 41 41 H 1.09002 * 113.60862 * 220.02141 * 17 14 13 42 42 H 1.08997 * 113.61290 * 89.11835 * 17 14 13 43 43 H 1.08993 * 109.59217 * 174.42256 * 18 6 5 44 44 H 1.09005 * 109.58715 * 294.70717 * 18 6 5 45 45 H 0.97002 * 119.99999 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2441 5 6 3.5675 -0.8495 -1.1691 6 6 3.9569 -1.6657 0.0656 7 1 3.4983 -2.6529 0.0087 8 7 5.4142 -1.8059 0.1194 9 6 5.9673 -2.8481 0.7709 10 8 5.2586 -3.6695 1.3130 11 6 7.4664 -2.9920 0.8267 12 6 8.1721 -1.7004 1.2445 13 6 8.0693 -3.6479 -0.4267 14 6 9.0130 -4.4074 0.5207 15 9 10.2023 -3.7233 0.7941 16 9 9.2239 -5.7403 0.1518 17 6 7.9376 -4.2313 1.6058 18 6 3.4651 -0.9453 1.3249 19 7 2.0225 -0.6980 1.1954 20 6 1.1537 -1.1107 2.1699 21 1 0.1360 -1.3655 1.9134 22 6 1.5808 -1.2015 3.4876 23 7 2.7038 -0.6226 3.8567 24 14 0.5619 -2.1451 4.7369 25 1 -0.6468 -2.6974 4.0741 26 1 1.3712 -3.2569 5.2974 27 1 0.1510 -1.2308 5.8326 28 1 -0.3633 0.5095 0.8924 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3634 -1.0276 -0.0051 31 1 1.7659 -0.1695 -2.1362 32 1 1.6029 -1.7270 -1.2887 33 1 4.0062 0.1459 -1.0995 34 1 3.9376 -1.3476 -2.0652 35 1 5.9809 -1.1487 -0.3139 36 1 7.9637 -1.4958 2.2946 37 1 9.2471 -1.8114 1.1023 38 1 7.8084 -0.8738 0.6341 39 1 7.3721 -4.2947 -0.9593 40 1 8.5825 -2.9453 -1.0833 41 1 8.3445 -3.9995 2.5901 42 1 7.2045 -5.0375 1.6289 43 1 3.6518 -1.5689 2.1991 44 1 3.9921 0.0027 1.4331 45 1 3.0025 -0.6863 4.7774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071982995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:17 Heat of formation + Delta-G solvation = -99.844458 kcal Electronic energy + Delta-G solvation = -28099.024764 eV Core-core repulsion = 23981.264596 eV Total energy + Delta-G solvation = -4117.760168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.00980 -47.32563 -40.31474 -38.19173 -36.87973 -34.46946 -32.84046 -30.96145 -29.88953 -29.18745 -26.55965 -26.10820 -25.12328 -24.12341 -22.30675 -21.47722 -20.35096 -19.52209 -18.81292 -18.08233 -16.94167 -16.62162 -16.35075 -15.89834 -15.65228 -15.05593 -14.62125 -14.26565 -14.07388 -13.93785 -13.80710 -13.64551 -13.62559 -13.46702 -13.37534 -12.76610 -12.57134 -12.40416 -12.38491 -11.99220 -11.76274 -11.48973 -11.36316 -11.13406 -11.12371 -10.89517 -10.72396 -10.62472 -10.53258 -10.40673 -10.26142 -9.96309 -9.76106 -9.47198 -9.32487 -8.57183 -8.42859 -6.62399 -5.74696 -3.19103 2.81909 3.21289 3.40614 3.44395 3.49639 3.50634 3.62089 4.02664 4.08700 4.29887 4.53241 4.88159 4.94028 5.16521 5.26057 5.28207 5.32746 5.35361 5.47242 5.52931 5.56225 5.64845 5.66245 5.70557 5.87172 5.94922 6.05053 6.08159 6.25136 6.28666 6.37389 6.43630 6.48097 6.60841 6.72291 6.90741 7.03057 7.11202 7.30600 7.73763 7.83782 7.88719 8.49050 8.56753 9.24199 9.88382 10.43218 11.33378 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003942 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.169763 B = 7101.084056 C = 8184.330287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.115 3.885 7 H 0.082 0.918 8 N -0.714 5.714 9 C 0.530 3.470 10 O -0.526 6.526 11 C -0.103 4.103 12 C -0.138 4.138 13 C -0.147 4.147 14 C 0.255 3.745 15 F -0.178 7.178 16 F -0.190 7.190 17 C -0.139 4.139 18 C 0.168 3.832 19 N -0.584 5.584 20 C -0.252 4.252 21 H 0.071 0.929 22 C 0.006 3.994 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.291 1.291 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.392 0.608 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.497 -1.772 -10.780 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.100 0.900 8 N -0.364 5.364 9 C 0.314 3.686 10 O -0.401 6.401 11 C -0.106 4.106 12 C -0.195 4.195 13 C -0.185 4.185 14 C 0.219 3.781 15 F -0.158 7.158 16 F -0.170 7.170 17 C -0.177 4.177 18 C 0.041 3.959 19 N -0.307 5.307 20 C -0.381 4.381 21 H 0.089 0.911 22 C -0.193 4.193 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.218 1.218 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.226 0.774 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.114 0.886 44 H 0.034 0.966 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.038 -2.373 -10.211 15.222 hybrid contribution 0.126 -0.169 0.497 0.540 sum 11.164 -2.542 -9.713 15.015 Atomic orbital electron populations 1.21804 0.96004 1.01390 1.00230 1.20482 0.93080 0.93544 0.87060 0.95761 1.22039 0.94293 1.01324 0.98924 1.21678 0.97432 0.99640 0.96678 1.22025 0.77696 1.00916 0.98333 0.90026 1.46048 1.08598 1.26533 1.55267 1.19751 0.88463 0.81674 0.78735 1.90754 1.62732 1.42234 1.44422 1.21874 0.94221 0.97172 0.97371 1.21760 1.00716 0.93872 1.03133 1.24107 0.97633 0.99874 0.96880 1.21997 0.81566 0.75475 0.99085 1.92986 1.49657 1.78714 1.94491 1.93013 1.95898 1.35694 1.92440 1.24074 0.96170 0.99012 0.98476 1.21080 0.83522 0.96897 0.94397 1.44036 1.02653 1.64837 1.19195 1.19192 0.94717 1.38100 0.86129 0.91138 1.25066 0.97727 0.99484 0.97017 1.70006 1.23324 1.44459 1.16745 0.86264 0.79676 0.79624 0.81464 1.20220 1.21518 1.21797 0.91981 0.94344 0.92803 0.92688 0.92074 0.92292 0.93116 0.77430 0.90668 0.90592 0.91251 0.86612 0.88089 0.88253 0.85586 0.88635 0.96567 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.94 37.16 0.30 -2.23 16 2 C 0.16 3.31 3.50 -67.61 -0.24 3.07 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.37 -26.63 -0.14 -2.22 16 5 C -0.12 -1.79 5.36 -26.69 -0.14 -1.93 16 6 C 0.12 2.15 2.60 -67.81 -0.18 1.97 16 7 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 8 N -0.71 -10.80 4.97 -53.69 -0.27 -11.07 16 9 C 0.53 8.54 6.90 -10.98 -0.08 8.47 16 10 O -0.53 -11.04 15.56 5.56 0.09 -10.95 16 11 C -0.10 -1.21 1.26 -154.85 -0.19 -1.41 16 12 C -0.14 -1.39 8.95 37.16 0.33 -1.06 16 13 C -0.15 -1.42 6.99 -25.92 -0.18 -1.60 16 14 C 0.26 2.81 3.26 -25.92 -0.08 2.72 16 15 F -0.18 -1.99 15.52 2.25 0.03 -1.96 16 16 F -0.19 -2.34 17.41 2.25 0.04 -2.30 16 17 C -0.14 -1.66 6.78 -25.92 -0.18 -1.84 16 18 C 0.17 3.96 4.87 -3.71 -0.02 3.94 16 19 N -0.58 -14.29 2.99 -164.80 -0.49 -14.78 16 20 C -0.25 -6.82 8.60 -15.06 -0.13 -6.95 16 21 H 0.07 1.87 6.21 -52.49 -0.33 1.54 16 22 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 23 N -0.90 -26.39 11.14 55.49 0.62 -25.77 16 24 Si 0.90 22.25 29.58 -169.99 -5.03 17.22 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H 0.06 1.24 7.62 -51.93 -0.40 0.85 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.01 7.44 -51.93 -0.39 0.63 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.39 4.59 7.51 -40.82 -0.31 4.29 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.68 6.20 -51.93 -0.32 0.35 16 38 H 0.07 0.61 7.04 -51.93 -0.37 0.25 16 39 H 0.12 1.12 8.09 -51.93 -0.42 0.70 16 40 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.13 1.66 7.43 -51.93 -0.39 1.27 16 43 H 0.10 2.68 6.06 -51.93 -0.31 2.36 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -31.77 356.66 -7.63 -39.40 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.97 Total: 3.82 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.02 Total: 1.01 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.14 Total: -51.62 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.77 -7.63 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.444 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds