Wall clock time and date at job start Tue Mar 31 2020 12:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.58196 * 2 1 4 4 C 1.53198 * 109.58250 * 239.58500 * 2 1 3 5 5 C 1.53039 * 109.30996 * 185.57439 * 4 2 1 6 6 C 1.53041 * 109.53715 * 61.36475 * 5 4 2 7 7 H 1.09007 * 109.49122 * 178.68194 * 6 5 4 8 8 N 1.46500 * 109.52637 * 58.60142 * 6 5 4 9 9 C 1.34774 * 119.99906 * 155.08022 * 8 6 5 10 10 O 1.21284 * 120.00121 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00027 * 179.97438 * 9 8 6 12 12 C 1.53001 * 112.84904 * 48.80359 * 11 9 8 13 13 C 1.53779 * 113.61389 * 277.49926 * 11 9 8 14 14 C 1.53785 * 87.08153 * 220.01748 * 13 11 9 15 15 F 1.39900 * 113.61356 * 270.88464 * 14 13 11 16 16 F 1.39894 * 113.69164 * 139.99259 * 14 13 11 17 17 C 1.53780 * 113.61602 * 180.02562 * 11 9 8 18 18 C 1.53185 * 109.31007 * 298.62925 * 6 5 4 19 19 N 1.46923 * 109.59217 * 120.29227 * 2 1 3 20 20 C 1.36939 * 120.62865 * 353.41694 * 19 2 1 21 21 H 1.07997 * 120.00034 * 29.04383 * 20 19 2 22 22 C 1.38806 * 119.99723 * 209.04392 * 20 19 2 23 23 N 1.31618 * 120.00383 * 14.96135 * 22 20 19 24 24 Si 1.86799 * 120.00046 * 194.96352 * 22 20 19 25 25 H 1.48503 * 109.47448 * 89.99607 * 24 22 20 26 26 H 1.48505 * 109.47339 * 210.00024 * 24 22 20 27 27 H 1.48501 * 109.46914 * 329.99819 * 24 22 20 28 28 H 1.09008 * 109.46591 * 299.70222 * 1 2 3 29 29 H 1.08994 * 109.47307 * 59.70734 * 1 2 3 30 30 H 1.09003 * 109.46873 * 179.71464 * 1 2 3 31 31 H 1.08999 * 109.49154 * 305.52688 * 4 2 1 32 32 H 1.09002 * 109.50059 * 65.61692 * 4 2 1 33 33 H 1.08998 * 109.45826 * 301.33655 * 5 4 2 34 34 H 1.09005 * 109.45631 * 181.38374 * 5 4 2 35 35 H 0.97000 * 120.00119 * 335.08245 * 8 6 5 36 36 H 1.08991 * 109.47349 * 69.66950 * 12 11 9 37 37 H 1.09005 * 109.47220 * 189.66774 * 12 11 9 38 38 H 1.09002 * 109.47341 * 309.66785 * 12 11 9 39 39 H 1.09001 * 113.61425 * 334.56316 * 13 11 9 40 40 H 1.09000 * 113.62061 * 105.47181 * 13 11 9 41 41 H 1.09000 * 113.61488 * 254.53014 * 17 11 9 42 42 H 1.08996 * 113.61479 * 25.34997 * 17 11 9 43 43 H 1.09011 * 109.58612 * 174.42356 * 18 6 5 44 44 H 1.08999 * 109.59368 * 294.85189 * 18 6 5 45 45 H 0.97001 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7307 -1.2447 5 6 3.5675 -0.8492 -1.1694 6 6 3.9570 -1.6656 0.0651 7 1 5.0413 -1.7694 0.1052 8 7 3.3412 -2.9927 -0.0113 9 6 3.8974 -4.0322 0.6418 10 8 4.9079 -3.8691 1.2924 11 6 3.2637 -5.3972 0.5638 12 6 2.9326 -5.8174 -0.8697 13 6 2.0999 -5.5934 1.5496 14 6 2.6415 -7.0134 1.7843 15 9 2.1188 -7.9654 0.9025 16 9 2.5857 -7.4225 3.1209 17 6 4.0178 -6.4731 1.3629 18 6 3.4652 -0.9454 1.3245 19 7 2.0227 -0.6982 1.1952 20 6 1.1539 -1.1111 2.1698 21 1 0.1364 -1.3666 1.9132 22 6 1.5810 -1.2012 3.4874 23 7 2.7042 -0.6228 3.8562 24 14 0.5615 -2.1434 4.7373 25 1 0.9952 -3.5636 4.7603 26 1 0.7522 -1.5457 6.0833 27 1 -0.8734 -2.0701 4.3620 28 1 -0.3633 0.5093 0.8927 29 1 -0.3633 0.5183 -0.8873 30 1 -0.3633 -1.0277 -0.0051 31 1 1.6029 -1.7267 -1.2895 32 1 1.7658 -0.1692 -2.1368 33 1 4.0061 0.1462 -1.0998 34 1 3.9377 -1.3470 -2.0657 35 1 2.5333 -3.1233 -0.5319 36 1 3.8567 -6.0078 -1.4152 37 1 2.3278 -6.7241 -0.8520 38 1 2.3772 -5.0198 -1.3631 39 1 2.1599 -4.9523 2.4291 40 1 1.1183 -5.5732 1.0761 41 1 4.5851 -7.1633 0.7385 42 1 4.6030 -6.0723 2.1905 43 1 3.6521 -1.5693 2.1987 44 1 3.9904 0.0037 1.4314 45 1 3.0025 -0.6854 4.7771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071982996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:20 Heat of formation + Delta-G solvation = -98.282905 kcal Electronic energy + Delta-G solvation = -29176.452724 eV Core-core repulsion = 25058.760269 eV Total energy + Delta-G solvation = -4117.692454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.80823 -47.11155 -40.19037 -38.26331 -36.68219 -34.16723 -32.77372 -30.95634 -29.93544 -29.05807 -26.37160 -26.17718 -25.08331 -24.20315 -22.19860 -21.49905 -20.46106 -19.06039 -18.74793 -17.97089 -16.73256 -16.46576 -16.18737 -15.85653 -15.41804 -14.96035 -14.50247 -14.13368 -14.03732 -13.95793 -13.72526 -13.55801 -13.44587 -13.42823 -13.13594 -12.82996 -12.61180 -12.41338 -12.14254 -11.92323 -11.71383 -11.28344 -11.20410 -11.18028 -11.00279 -10.96319 -10.86776 -10.73271 -10.40984 -10.39632 -10.34853 -9.98202 -9.57609 -9.48100 -9.25402 -8.47387 -8.39355 -6.62470 -5.76806 -3.21326 3.01793 3.35638 3.42140 3.42407 3.45298 3.65303 3.84825 4.21199 4.32458 4.47405 4.52086 5.01001 5.10278 5.27885 5.30968 5.35095 5.44834 5.47928 5.52862 5.55231 5.57548 5.63584 5.77787 5.84824 5.96588 5.98860 6.08205 6.12358 6.19233 6.30024 6.32048 6.41621 6.49425 6.57533 6.66759 6.87632 7.02207 7.09578 7.36764 7.67926 7.81426 8.06489 8.46957 8.73756 9.21615 9.85911 10.42208 11.30857 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.006338 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.771924 B = 4416.876688 C = 5651.934939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.075 0.925 8 N -0.693 5.693 9 C 0.534 3.466 10 O -0.542 6.542 11 C -0.104 4.104 12 C -0.135 4.135 13 C -0.143 4.143 14 C 0.253 3.747 15 F -0.181 7.181 16 F -0.189 7.189 17 C -0.137 4.137 18 C 0.162 3.838 19 N -0.582 5.582 20 C -0.250 4.250 21 H 0.068 0.932 22 C 0.007 3.993 23 N -0.898 5.898 24 Si 0.892 3.108 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.395 0.605 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.024 0.976 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 -8.083 -11.337 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.093 0.907 8 N -0.343 5.343 9 C 0.319 3.681 10 O -0.420 6.420 11 C -0.107 4.107 12 C -0.192 4.192 13 C -0.182 4.182 14 C 0.216 3.784 15 F -0.161 7.161 16 F -0.170 7.170 17 C -0.175 4.175 18 C 0.035 3.965 19 N -0.305 5.305 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.542 5.542 24 Si 0.722 3.278 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.042 0.958 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.655 -7.949 -10.683 13.332 hybrid contribution -0.999 -0.648 0.619 1.342 sum -0.344 -8.596 -10.064 13.240 Atomic orbital electron populations 1.21797 0.96134 1.01164 1.00201 1.20465 0.92868 0.93655 0.87213 0.95792 1.22061 0.95146 1.00614 0.99096 1.21688 0.97002 1.00172 0.96787 1.21803 0.96936 0.81849 0.98272 0.90698 1.45802 1.29241 1.08516 1.50752 1.19640 0.84237 0.85035 0.79225 1.90683 1.25330 1.84844 1.41130 1.21829 0.97406 0.94532 0.96939 1.21734 1.02613 1.02586 0.92287 1.24114 0.99516 0.92971 1.01571 1.22053 0.97884 0.85803 0.72628 1.92966 1.88145 1.67228 1.67797 1.93014 1.97131 1.92285 1.34520 1.24023 0.94741 0.96634 1.02100 1.21193 0.83738 0.97071 0.94519 1.44034 1.02672 1.64860 1.18953 1.19084 0.94656 1.38113 0.86134 0.91411 1.25045 0.97640 0.99658 0.96915 1.69976 1.23129 1.44215 1.16886 0.86466 0.79873 0.80072 0.81416 1.21344 1.21769 1.20504 0.92048 0.94460 0.92998 0.92739 0.92892 0.91136 0.93071 0.76973 0.91325 0.90561 0.91396 0.85923 0.88096 0.88674 0.85624 0.88417 0.95780 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.94 37.16 0.30 -2.05 16 2 C 0.16 3.10 3.50 -67.59 -0.24 2.86 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.95 5.21 -26.61 -0.14 -2.09 16 5 C -0.12 -1.77 5.59 -26.69 -0.15 -1.92 16 6 C 0.12 2.12 2.81 -67.81 -0.19 1.93 16 7 H 0.07 1.41 7.58 -51.92 -0.39 1.02 16 8 N -0.69 -11.48 4.80 -53.69 -0.26 -11.74 16 9 C 0.53 9.31 6.89 -10.99 -0.08 9.23 16 10 O -0.54 -11.49 15.56 5.55 0.09 -11.40 16 11 C -0.10 -1.43 1.26 -154.85 -0.19 -1.62 16 12 C -0.13 -1.42 8.95 37.16 0.33 -1.09 16 13 C -0.14 -2.09 6.99 -25.92 -0.18 -2.27 16 14 C 0.25 3.54 3.26 -25.94 -0.08 3.45 16 15 F -0.18 -2.39 15.52 2.25 0.03 -2.36 16 16 F -0.19 -3.01 17.41 2.25 0.04 -2.97 16 17 C -0.14 -1.84 6.78 -25.94 -0.18 -2.01 16 18 C 0.16 3.69 4.89 -3.72 -0.02 3.68 16 19 N -0.58 -13.18 2.91 -164.77 -0.48 -13.66 16 20 C -0.25 -6.31 8.60 -15.06 -0.13 -6.44 16 21 H 0.07 1.68 6.21 -52.49 -0.33 1.35 16 22 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 23 N -0.90 -25.70 11.14 55.49 0.62 -25.08 16 24 Si 0.89 21.37 29.58 -169.99 -5.03 16.34 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.06 1.18 7.62 -51.92 -0.40 0.79 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 31 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 5.82 5.68 -40.82 -0.23 5.59 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.75 6.20 -51.93 -0.32 0.43 16 38 H 0.07 0.65 7.04 -51.93 -0.37 0.29 16 39 H 0.12 2.13 8.09 -51.93 -0.42 1.71 16 40 H 0.10 1.29 8.10 -51.93 -0.42 0.87 16 41 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.13 1.89 7.43 -51.93 -0.39 1.51 16 43 H 0.10 2.65 6.06 -51.92 -0.31 2.33 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -29.62 353.14 -7.51 -37.12 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.81 Total: 6.67 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.03 Total: 1.75 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.12 Total: -50.48 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.07 Total: -5.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.62 -7.51 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.159 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds