Wall clock time and date at job start Tue Mar 31 2020 12:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.58196 * 2 1 4 4 C 1.53198 * 109.58250 * 239.58500 * 2 1 3 5 5 C 1.53039 * 109.30996 * 185.57439 * 4 2 1 6 6 C 1.53041 * 109.53715 * 61.36475 * 5 4 2 7 7 H 1.09007 * 109.49122 * 178.68194 * 6 5 4 8 8 N 1.46500 * 109.52637 * 58.60142 * 6 5 4 9 9 C 1.34774 * 119.99906 * 155.08022 * 8 6 5 10 10 O 1.21284 * 120.00121 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00027 * 179.97438 * 9 8 6 12 12 C 1.53001 * 112.84904 * 48.80359 * 11 9 8 13 13 C 1.53779 * 113.61389 * 277.49926 * 11 9 8 14 14 C 1.53785 * 87.08153 * 220.01748 * 13 11 9 15 15 F 1.39900 * 113.61356 * 270.88464 * 14 13 11 16 16 F 1.39894 * 113.69164 * 139.99259 * 14 13 11 17 17 C 1.53780 * 113.61602 * 180.02562 * 11 9 8 18 18 C 1.53185 * 109.31007 * 298.62925 * 6 5 4 19 19 N 1.46923 * 109.59217 * 120.29227 * 2 1 3 20 20 C 1.36939 * 120.62865 * 353.41694 * 19 2 1 21 21 H 1.07997 * 120.00034 * 29.04383 * 20 19 2 22 22 C 1.38806 * 119.99723 * 209.04392 * 20 19 2 23 23 N 1.31618 * 120.00383 * 14.96135 * 22 20 19 24 24 Si 1.86799 * 120.00046 * 194.96352 * 22 20 19 25 25 H 1.48503 * 109.47448 * 89.99607 * 24 22 20 26 26 H 1.48505 * 109.47339 * 210.00024 * 24 22 20 27 27 H 1.48501 * 109.46914 * 329.99819 * 24 22 20 28 28 H 1.09008 * 109.46591 * 299.70222 * 1 2 3 29 29 H 1.08994 * 109.47307 * 59.70734 * 1 2 3 30 30 H 1.09003 * 109.46873 * 179.71464 * 1 2 3 31 31 H 1.08999 * 109.49154 * 305.52688 * 4 2 1 32 32 H 1.09002 * 109.50059 * 65.61692 * 4 2 1 33 33 H 1.08998 * 109.45826 * 301.33655 * 5 4 2 34 34 H 1.09005 * 109.45631 * 181.38374 * 5 4 2 35 35 H 0.97000 * 120.00119 * 335.08245 * 8 6 5 36 36 H 1.08991 * 109.47349 * 69.66950 * 12 11 9 37 37 H 1.09005 * 109.47220 * 189.66774 * 12 11 9 38 38 H 1.09002 * 109.47341 * 309.66785 * 12 11 9 39 39 H 1.09001 * 113.61425 * 334.56316 * 13 11 9 40 40 H 1.09000 * 113.62061 * 105.47181 * 13 11 9 41 41 H 1.09000 * 113.61488 * 254.53014 * 17 11 9 42 42 H 1.08996 * 113.61479 * 25.34997 * 17 11 9 43 43 H 1.09011 * 109.58612 * 174.42356 * 18 6 5 44 44 H 1.08999 * 109.59368 * 294.85189 * 18 6 5 45 45 H 0.97001 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7307 -1.2447 5 6 3.5675 -0.8492 -1.1694 6 6 3.9570 -1.6656 0.0651 7 1 5.0413 -1.7694 0.1052 8 7 3.3412 -2.9927 -0.0113 9 6 3.8974 -4.0322 0.6418 10 8 4.9079 -3.8691 1.2924 11 6 3.2637 -5.3972 0.5638 12 6 2.9326 -5.8174 -0.8697 13 6 2.0999 -5.5934 1.5496 14 6 2.6415 -7.0134 1.7843 15 9 2.1188 -7.9654 0.9025 16 9 2.5857 -7.4225 3.1209 17 6 4.0178 -6.4731 1.3629 18 6 3.4652 -0.9454 1.3245 19 7 2.0227 -0.6982 1.1952 20 6 1.1539 -1.1111 2.1698 21 1 0.1364 -1.3666 1.9132 22 6 1.5810 -1.2012 3.4874 23 7 2.7042 -0.6228 3.8562 24 14 0.5615 -2.1434 4.7373 25 1 0.9952 -3.5636 4.7603 26 1 0.7522 -1.5457 6.0833 27 1 -0.8734 -2.0701 4.3620 28 1 -0.3633 0.5093 0.8927 29 1 -0.3633 0.5183 -0.8873 30 1 -0.3633 -1.0277 -0.0051 31 1 1.6029 -1.7267 -1.2895 32 1 1.7658 -0.1692 -2.1368 33 1 4.0061 0.1462 -1.0998 34 1 3.9377 -1.3470 -2.0657 35 1 2.5333 -3.1233 -0.5319 36 1 3.8567 -6.0078 -1.4152 37 1 2.3278 -6.7241 -0.8520 38 1 2.3772 -5.0198 -1.3631 39 1 2.1599 -4.9523 2.4291 40 1 1.1183 -5.5732 1.0761 41 1 4.5851 -7.1633 0.7385 42 1 4.6030 -6.0723 2.1905 43 1 3.6521 -1.5693 2.1987 44 1 3.9904 0.0037 1.4314 45 1 3.0025 -0.6854 4.7771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071982996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:20 Heat of formation + Delta-G solvation = -115.989249 kcal Electronic energy + Delta-G solvation = -29177.220528 eV Core-core repulsion = 25058.760269 eV Total energy + Delta-G solvation = -4118.460259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.95533 -48.27779 -41.52514 -39.69516 -38.06527 -35.77544 -34.49672 -32.36220 -31.71458 -30.09362 -27.85609 -27.39890 -26.79209 -25.40620 -23.85315 -22.77579 -21.99216 -20.38403 -20.24547 -19.15151 -18.21238 -17.86398 -17.44001 -17.28021 -16.94641 -16.47656 -15.93556 -15.74687 -15.46895 -15.18997 -15.07347 -14.88968 -14.78344 -14.58816 -14.50877 -14.23369 -14.01844 -13.71873 -13.31902 -13.28417 -12.95784 -12.90282 -12.81608 -12.62047 -12.54921 -12.38373 -12.25146 -12.09357 -12.06184 -11.98613 -11.55179 -11.50474 -11.18951 -11.02110 -10.70357 -10.49914 -9.91130 -8.55147 -7.80116 -5.24974 1.40612 1.43465 1.49958 1.64793 2.19463 2.42921 2.50714 2.69511 3.10330 3.19858 3.35551 3.37418 3.65850 3.88425 4.02275 4.07716 4.13610 4.22016 4.28244 4.40447 4.52719 4.56166 4.61013 4.67922 4.76582 4.84473 4.87798 4.89665 4.96813 4.99919 5.07466 5.12346 5.15239 5.26507 5.30183 5.36083 5.59526 5.64912 5.72558 5.77599 5.78319 6.46253 6.70857 7.21038 7.38647 7.95650 8.46195 9.24785 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.006338 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.771924 B = 4416.876688 C = 5651.934939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.064 0.936 8 N -0.683 5.683 9 C 0.527 3.473 10 O -0.588 6.588 11 C -0.093 4.093 12 C -0.129 4.129 13 C -0.148 4.148 14 C 0.259 3.741 15 F -0.170 7.170 16 F -0.203 7.203 17 C -0.137 4.137 18 C 0.170 3.830 19 N -0.592 5.592 20 C -0.230 4.230 21 H 0.079 0.921 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.941 3.059 25 H -0.292 1.292 26 H -0.306 1.306 27 H -0.261 1.261 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.408 0.592 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.049 0.951 44 H -0.008 1.008 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 -9.370 -15.193 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.082 0.918 8 N -0.333 5.333 9 C 0.313 3.687 10 O -0.468 6.468 11 C -0.096 4.096 12 C -0.186 4.186 13 C -0.187 4.187 14 C 0.223 3.777 15 F -0.150 7.150 16 F -0.184 7.184 17 C -0.175 4.175 18 C 0.043 3.957 19 N -0.316 5.316 20 C -0.361 4.361 21 H 0.096 0.904 22 C -0.247 4.247 23 N -0.584 5.584 24 Si 0.771 3.229 25 H -0.219 1.219 26 H -0.233 1.233 27 H -0.186 1.186 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.246 0.754 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.010 0.990 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.096 -9.241 -14.601 17.314 hybrid contribution -0.481 -0.174 1.800 1.871 sum -1.577 -9.415 -12.800 15.968 Atomic orbital electron populations 1.21728 0.94696 1.01468 1.00687 1.20785 0.94159 0.93154 0.87181 0.97158 1.21947 0.94656 1.01159 0.97926 1.21659 0.97316 0.99792 0.96035 1.21479 0.96274 0.82647 0.97529 0.91827 1.45696 1.29499 1.07655 1.50494 1.20343 0.83703 0.86526 0.78092 1.90667 1.27581 1.85755 1.42831 1.21871 0.96441 0.92148 0.99166 1.21783 1.03788 1.03563 0.89480 1.24069 1.01134 0.92784 1.00670 1.21949 0.98062 0.85564 0.72130 1.92986 1.88033 1.66777 1.67249 1.92989 1.97198 1.92389 1.35779 1.24003 0.94636 0.97025 1.01815 1.20869 0.84185 0.95206 0.95410 1.44241 1.02140 1.65473 1.19754 1.19421 0.95059 1.35315 0.86315 0.90382 1.25667 0.98744 1.01480 0.98843 1.70155 1.25180 1.46878 1.16204 0.85646 0.79680 0.78483 0.79077 1.21921 1.23308 1.18554 0.94848 0.90731 0.92708 0.91516 0.89272 0.91218 0.89420 0.75443 0.89915 0.89305 0.89890 0.89579 0.85858 0.85868 0.88022 0.93229 0.98990 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.94 71.98 0.57 -3.51 16 2 C 0.15 5.43 3.50 44.98 0.16 5.59 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.12 -3.02 5.21 30.67 0.16 -2.86 16 5 C -0.11 -2.93 5.59 30.62 0.17 -2.76 16 6 C 0.13 4.54 2.81 45.07 0.13 4.66 16 7 H 0.06 2.43 7.58 -2.38 -0.02 2.41 16 8 N -0.68 -21.62 4.80 -442.17 -2.12 -23.75 16 9 C 0.53 18.21 6.89 87.66 0.60 18.81 16 10 O -0.59 -25.83 15.56 -3.04 -0.05 -25.88 16 11 C -0.09 -2.41 1.26 -52.40 -0.07 -2.47 16 12 C -0.13 -2.19 8.95 71.98 0.64 -1.55 16 13 C -0.15 -4.17 6.99 31.12 0.22 -3.95 16 14 C 0.26 6.93 3.26 31.11 0.10 7.03 16 15 F -0.17 -4.01 15.52 44.97 0.70 -3.31 16 16 F -0.20 -6.43 17.41 44.97 0.78 -5.65 16 17 C -0.14 -3.55 6.78 31.11 0.21 -3.34 16 18 C 0.17 8.11 4.89 86.36 0.42 8.53 16 19 N -0.59 -26.94 2.91 -675.22 -1.96 -28.90 16 20 C -0.23 -11.72 8.60 84.03 0.72 -10.99 16 21 H 0.08 3.78 6.21 -2.91 -0.02 3.76 16 22 C -0.05 -2.92 4.96 84.86 0.42 -2.50 16 23 N -0.94 -56.85 11.14 21.65 0.24 -56.61 16 24 Si 0.94 45.37 29.58 68.60 2.03 47.40 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.03 1.22 7.62 -2.38 -0.02 1.21 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.70 7.44 -2.39 -0.02 1.68 16 31 H 0.07 1.59 6.41 -2.39 -0.02 1.57 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.80 8.14 -2.38 -0.02 1.79 16 35 H 0.41 10.66 5.68 -92.71 -0.53 10.14 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.34 6.20 -2.38 -0.01 1.33 16 38 H 0.08 1.18 7.04 -2.39 -0.02 1.16 16 39 H 0.09 3.10 8.09 -2.39 -0.02 3.08 16 40 H 0.12 2.85 8.10 -2.39 -0.02 2.83 16 41 H 0.12 2.47 8.10 -2.39 -0.02 2.45 16 42 H 0.10 3.18 7.43 -2.39 -0.02 3.16 16 43 H 0.05 2.86 6.06 -2.38 -0.01 2.84 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -69.72 353.14 4.56 -65.16 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.48 Total: 20.84 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 4.46 Total: 10.70 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.85 Total: -109.26 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 1.48 Total: -8.96 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.72 4.56 -65.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.832 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds