Wall clock time and date at job start Tue Mar 31 2020 12:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70313 * 2 1 4 4 C 1.53633 * 109.66246 * 120.59220 * 2 1 3 5 5 C 1.53039 * 109.23864 * 174.55171 * 4 2 1 6 6 C 1.53043 * 109.53875 * 298.50697 * 5 4 2 7 7 H 1.08992 * 109.49580 * 181.31976 * 6 5 4 8 8 N 1.46504 * 109.49421 * 301.41894 * 6 5 4 9 9 C 1.34777 * 119.99695 * 204.83689 * 8 6 5 10 10 O 1.21289 * 120.00057 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00293 * 180.02562 * 9 8 6 12 12 C 1.53002 * 112.84827 * 48.80190 * 11 9 8 13 13 C 1.53780 * 113.61459 * 277.50013 * 11 9 8 14 14 C 1.53783 * 87.08239 * 220.01526 * 13 11 9 15 15 F 1.39898 * 113.61223 * 270.88211 * 14 13 11 16 16 F 1.39892 * 113.69390 * 139.98917 * 14 13 11 17 17 C 1.53774 * 113.62061 * 180.02562 * 11 9 8 18 18 C 1.53187 * 109.31026 * 61.36811 * 6 5 4 19 19 N 1.46917 * 109.58799 * 239.64050 * 2 1 3 20 20 C 1.36936 * 120.63092 * 6.62825 * 19 2 1 21 21 H 1.08002 * 120.00194 * 330.71598 * 20 19 2 22 22 C 1.38813 * 119.99784 * 150.43765 * 20 19 2 23 23 N 1.31621 * 120.00198 * 345.37026 * 22 20 19 24 24 Si 1.86800 * 119.99708 * 165.37652 * 22 20 19 25 25 H 1.48497 * 109.47450 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47010 * 119.99978 * 24 22 20 27 27 H 1.48498 * 109.47171 * 239.99669 * 24 22 20 28 28 H 1.09001 * 109.47138 * 180.35651 * 1 2 3 29 29 H 1.09004 * 109.47044 * 300.35682 * 1 2 3 30 30 H 1.08999 * 109.46861 * 60.35869 * 1 2 3 31 31 H 1.08994 * 109.63884 * 54.55591 * 4 2 1 32 32 H 1.09006 * 109.45572 * 294.43153 * 4 2 1 33 33 H 1.09004 * 109.45537 * 178.48850 * 5 4 2 34 34 H 1.08999 * 109.46168 * 58.53012 * 5 4 2 35 35 H 0.96995 * 120.00266 * 24.83388 * 8 6 5 36 36 H 1.09001 * 109.47285 * 69.67024 * 12 11 9 37 37 H 1.09003 * 109.47434 * 189.67229 * 12 11 9 38 38 H 1.09004 * 109.47395 * 309.67089 * 12 11 9 39 39 H 1.09004 * 113.61366 * 334.56200 * 13 11 9 40 40 H 1.08998 * 113.62073 * 105.46738 * 13 11 9 41 41 H 1.09005 * 113.61550 * 254.53143 * 17 11 9 42 42 H 1.09008 * 113.61058 * 25.42722 * 17 11 9 43 43 H 1.08997 * 109.58389 * 185.58094 * 18 6 5 44 44 H 1.08994 * 109.70603 * 65.22439 * 18 6 5 45 45 H 0.96998 * 119.99514 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7363 1.2454 5 6 3.5711 -0.8497 1.1677 6 6 3.9615 -1.6628 -0.0687 7 1 5.0460 -1.7631 -0.1106 8 7 3.3494 -2.9917 0.0067 9 6 3.9065 -4.0284 -0.6500 10 8 4.9149 -3.8614 -1.3029 11 6 3.2767 -5.3953 -0.5730 12 6 1.7714 -5.3720 -0.8459 13 6 3.6633 -6.1814 0.6909 14 6 3.7531 -7.4270 -0.2065 15 9 2.5436 -8.1198 -0.3261 16 9 4.8308 -8.2645 0.1003 17 6 4.0321 -6.4679 -1.3752 18 6 3.4657 -0.9420 -1.3262 19 7 2.0225 -0.6996 -1.1943 20 6 1.1538 -1.1128 -2.1688 21 1 0.1371 -1.3711 -1.9118 22 6 1.5782 -1.1941 -3.4880 23 7 2.7006 -0.6129 -3.8552 24 14 0.5563 -2.1282 -4.7420 25 1 -0.6507 -2.6858 -4.0805 26 1 0.1434 -1.2057 -5.8301 27 1 1.3640 -3.2361 -5.3123 28 1 -0.3633 -1.0277 0.0064 29 1 -0.3633 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8932 31 1 1.6096 -1.7337 1.2891 32 1 1.7688 -0.1776 2.1391 33 1 3.9442 -1.3479 2.0626 34 1 4.0065 0.1472 1.0991 35 1 2.5432 -3.1254 0.5292 36 1 1.5962 -5.1433 -1.8972 37 1 1.3442 -6.3467 -0.6100 38 1 1.3012 -4.6094 -0.2250 39 1 4.6205 -5.8802 1.1167 40 1 2.8667 -6.2344 1.4330 41 1 3.5332 -6.7522 -2.3018 42 1 5.0900 -6.2449 -1.5141 43 1 3.6532 -1.5638 -2.2016 44 1 3.9875 0.0087 -1.4348 45 1 2.9969 -0.6694 -4.7771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071982998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:28 Heat of formation + Delta-G solvation = -98.078195 kcal Electronic energy + Delta-G solvation = -28972.891200 eV Core-core repulsion = 24855.207623 eV Total energy + Delta-G solvation = -4117.683577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.91521 -47.23061 -40.21024 -38.27144 -36.70048 -34.16331 -32.75721 -30.94619 -29.91635 -28.97978 -26.45492 -26.21283 -25.06928 -24.20219 -22.19981 -21.55062 -20.45857 -19.08064 -18.75080 -18.05644 -16.84272 -16.50932 -16.26560 -15.85609 -15.41663 -14.96288 -14.51902 -14.16092 -14.05504 -14.01086 -13.78887 -13.55521 -13.50815 -13.38481 -13.18519 -12.86338 -12.54914 -12.29558 -12.25068 -11.96838 -11.68298 -11.27680 -11.20479 -11.18500 -10.99490 -10.95573 -10.86647 -10.73345 -10.50476 -10.40358 -10.34487 -9.98055 -9.57010 -9.48037 -9.25140 -8.47097 -8.39407 -6.61543 -5.76293 -3.20913 2.98052 3.34025 3.35641 3.42515 3.45191 3.62495 3.74177 4.14778 4.24506 4.43457 4.48168 5.07367 5.12326 5.28159 5.30615 5.33140 5.36461 5.39179 5.46383 5.48727 5.56878 5.68838 5.87169 5.90335 5.98144 5.99950 6.07877 6.12879 6.29985 6.31273 6.32127 6.41672 6.49453 6.57704 6.66707 6.87643 7.02134 7.09689 7.37051 7.69095 7.82236 8.06343 8.47709 8.73441 9.22200 9.86573 10.42801 11.31436 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.005356 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.331359 B = 5226.524841 C = 6198.708247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.075 0.925 8 N -0.693 5.693 9 C 0.534 3.466 10 O -0.542 6.542 11 C -0.100 4.100 12 C -0.136 4.136 13 C -0.147 4.147 14 C 0.255 3.745 15 F -0.178 7.178 16 F -0.191 7.191 17 C -0.139 4.139 18 C 0.162 3.838 19 N -0.582 5.582 20 C -0.248 4.248 21 H 0.068 0.932 22 C 0.006 3.994 23 N -0.899 5.899 24 Si 0.893 3.107 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.289 1.289 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.024 0.976 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -8.189 11.616 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.093 0.907 8 N -0.343 5.343 9 C 0.318 3.682 10 O -0.419 6.419 11 C -0.103 4.103 12 C -0.193 4.193 13 C -0.185 4.185 14 C 0.219 3.781 15 F -0.158 7.158 16 F -0.172 7.172 17 C -0.178 4.178 18 C 0.035 3.965 19 N -0.305 5.305 20 C -0.378 4.378 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.543 5.543 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.216 1.216 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.230 0.770 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.042 0.958 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.822 -8.066 10.981 13.650 hybrid contribution -0.903 -0.655 -0.541 1.240 sum -0.082 -8.721 10.440 13.604 Atomic orbital electron populations 1.21788 0.96117 1.01173 1.00197 1.20553 0.92847 0.93586 0.87221 0.95772 1.22136 0.95116 1.00588 0.99095 1.21691 0.97024 1.00193 0.96756 1.21795 0.96954 0.81811 0.98259 0.90719 1.45803 1.29460 1.08483 1.50558 1.19649 0.84177 0.85049 0.79308 1.90686 1.25596 1.84667 1.40993 1.21840 0.98145 0.93459 0.96902 1.21740 0.90379 1.03116 1.04087 1.24103 1.05338 0.91813 0.97253 1.22004 0.72618 0.83242 1.00274 1.92988 1.44503 1.81651 1.96692 1.93000 1.54869 1.75268 1.94052 1.24056 1.04793 0.91529 0.97371 1.21184 0.83709 0.97073 0.94549 1.44058 1.02635 1.64793 1.19050 1.19109 0.94745 1.37908 0.86037 0.91394 1.25062 0.97641 0.99614 0.96980 1.69986 1.23225 1.44377 1.16722 0.86376 0.79696 0.79716 0.81920 1.20274 1.21799 1.21618 0.92975 0.94465 0.92047 0.92731 0.92935 0.93095 0.91140 0.76959 0.90593 0.90935 0.91026 0.86752 0.88180 0.88377 0.85711 0.88406 0.95786 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.95 37.16 0.30 -2.05 16 2 C 0.16 3.10 3.51 -67.38 -0.24 2.86 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.95 5.23 -26.38 -0.14 -2.09 16 5 C -0.12 -1.77 5.58 -26.69 -0.15 -1.92 16 6 C 0.12 2.12 2.81 -67.81 -0.19 1.93 16 7 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 8 N -0.69 -11.45 4.80 -53.69 -0.26 -11.71 16 9 C 0.53 9.27 6.89 -10.99 -0.08 9.19 16 10 O -0.54 -11.47 15.57 5.55 0.09 -11.38 16 11 C -0.10 -1.37 1.26 -154.85 -0.19 -1.56 16 12 C -0.14 -1.79 8.95 37.16 0.33 -1.46 16 13 C -0.15 -1.61 6.99 -25.92 -0.18 -1.79 16 14 C 0.25 3.12 3.26 -25.94 -0.08 3.03 16 15 F -0.18 -2.25 15.52 2.25 0.03 -2.22 16 16 F -0.19 -2.51 17.41 2.25 0.04 -2.47 16 17 C -0.14 -1.86 6.78 -25.95 -0.18 -2.04 16 18 C 0.16 3.71 4.88 -3.71 -0.02 3.69 16 19 N -0.58 -13.21 2.90 -164.52 -0.48 -13.69 16 20 C -0.25 -6.28 8.59 -15.06 -0.13 -6.41 16 21 H 0.07 1.68 6.22 -52.49 -0.33 1.36 16 22 C 0.01 0.16 4.97 -17.43 -0.09 0.08 16 23 N -0.90 -25.84 11.13 55.49 0.62 -25.23 16 24 Si 0.89 21.39 29.58 -169.99 -5.03 16.36 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.18 7.62 -51.93 -0.40 0.78 16 31 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 5.80 5.68 -40.82 -0.23 5.57 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.84 6.20 -51.93 -0.32 0.51 16 38 H 0.07 0.91 7.04 -51.93 -0.37 0.54 16 39 H 0.11 1.20 8.09 -51.93 -0.42 0.78 16 40 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 42 H 0.12 1.75 7.43 -51.92 -0.39 1.37 16 43 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -29.83 353.19 -7.51 -37.33 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.81 Total: 6.19 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.03 Total: 1.48 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.12 Total: -50.62 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.07 Total: -4.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.83 -7.51 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.743 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds