Wall clock time and date at job start Tue Mar 31 2020 12:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70313 * 2 1 4 4 C 1.53633 * 109.66246 * 120.59220 * 2 1 3 5 5 C 1.53039 * 109.23864 * 174.55171 * 4 2 1 6 6 C 1.53043 * 109.53875 * 298.50697 * 5 4 2 7 7 H 1.08992 * 109.49580 * 181.31976 * 6 5 4 8 8 N 1.46504 * 109.49421 * 301.41894 * 6 5 4 9 9 C 1.34777 * 119.99695 * 204.83689 * 8 6 5 10 10 O 1.21289 * 120.00057 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00293 * 180.02562 * 9 8 6 12 12 C 1.53002 * 112.84827 * 48.80190 * 11 9 8 13 13 C 1.53780 * 113.61459 * 277.50013 * 11 9 8 14 14 C 1.53783 * 87.08239 * 220.01526 * 13 11 9 15 15 F 1.39898 * 113.61223 * 270.88211 * 14 13 11 16 16 F 1.39892 * 113.69390 * 139.98917 * 14 13 11 17 17 C 1.53774 * 113.62061 * 180.02562 * 11 9 8 18 18 C 1.53187 * 109.31026 * 61.36811 * 6 5 4 19 19 N 1.46917 * 109.58799 * 239.64050 * 2 1 3 20 20 C 1.36936 * 120.63092 * 6.62825 * 19 2 1 21 21 H 1.08002 * 120.00194 * 330.71598 * 20 19 2 22 22 C 1.38813 * 119.99784 * 150.43765 * 20 19 2 23 23 N 1.31621 * 120.00198 * 345.37026 * 22 20 19 24 24 Si 1.86800 * 119.99708 * 165.37652 * 22 20 19 25 25 H 1.48497 * 109.47450 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47010 * 119.99978 * 24 22 20 27 27 H 1.48498 * 109.47171 * 239.99669 * 24 22 20 28 28 H 1.09001 * 109.47138 * 180.35651 * 1 2 3 29 29 H 1.09004 * 109.47044 * 300.35682 * 1 2 3 30 30 H 1.08999 * 109.46861 * 60.35869 * 1 2 3 31 31 H 1.08994 * 109.63884 * 54.55591 * 4 2 1 32 32 H 1.09006 * 109.45572 * 294.43153 * 4 2 1 33 33 H 1.09004 * 109.45537 * 178.48850 * 5 4 2 34 34 H 1.08999 * 109.46168 * 58.53012 * 5 4 2 35 35 H 0.96995 * 120.00266 * 24.83388 * 8 6 5 36 36 H 1.09001 * 109.47285 * 69.67024 * 12 11 9 37 37 H 1.09003 * 109.47434 * 189.67229 * 12 11 9 38 38 H 1.09004 * 109.47395 * 309.67089 * 12 11 9 39 39 H 1.09004 * 113.61366 * 334.56200 * 13 11 9 40 40 H 1.08998 * 113.62073 * 105.46738 * 13 11 9 41 41 H 1.09005 * 113.61550 * 254.53143 * 17 11 9 42 42 H 1.09008 * 113.61058 * 25.42722 * 17 11 9 43 43 H 1.08997 * 109.58389 * 185.58094 * 18 6 5 44 44 H 1.08994 * 109.70603 * 65.22439 * 18 6 5 45 45 H 0.96998 * 119.99514 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7363 1.2454 5 6 3.5711 -0.8497 1.1677 6 6 3.9615 -1.6628 -0.0687 7 1 5.0460 -1.7631 -0.1106 8 7 3.3494 -2.9917 0.0067 9 6 3.9065 -4.0284 -0.6500 10 8 4.9149 -3.8614 -1.3029 11 6 3.2767 -5.3953 -0.5730 12 6 1.7714 -5.3720 -0.8459 13 6 3.6633 -6.1814 0.6909 14 6 3.7531 -7.4270 -0.2065 15 9 2.5436 -8.1198 -0.3261 16 9 4.8308 -8.2645 0.1003 17 6 4.0321 -6.4679 -1.3752 18 6 3.4657 -0.9420 -1.3262 19 7 2.0225 -0.6996 -1.1943 20 6 1.1538 -1.1128 -2.1688 21 1 0.1371 -1.3711 -1.9118 22 6 1.5782 -1.1941 -3.4880 23 7 2.7006 -0.6129 -3.8552 24 14 0.5563 -2.1282 -4.7420 25 1 -0.6507 -2.6858 -4.0805 26 1 0.1434 -1.2057 -5.8301 27 1 1.3640 -3.2361 -5.3123 28 1 -0.3633 -1.0277 0.0064 29 1 -0.3633 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8932 31 1 1.6096 -1.7337 1.2891 32 1 1.7688 -0.1776 2.1391 33 1 3.9442 -1.3479 2.0626 34 1 4.0065 0.1472 1.0991 35 1 2.5432 -3.1254 0.5292 36 1 1.5962 -5.1433 -1.8972 37 1 1.3442 -6.3467 -0.6100 38 1 1.3012 -4.6094 -0.2250 39 1 4.6205 -5.8802 1.1167 40 1 2.8667 -6.2344 1.4330 41 1 3.5332 -6.7522 -2.3018 42 1 5.0900 -6.2449 -1.5141 43 1 3.6532 -1.5638 -2.2016 44 1 3.9875 0.0087 -1.4348 45 1 2.9969 -0.6694 -4.7771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071982998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:27 Heat of formation + Delta-G solvation = -115.891905 kcal Electronic energy + Delta-G solvation = -28973.663661 eV Core-core repulsion = 24855.207623 eV Total energy + Delta-G solvation = -4118.456038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.91071 -48.22970 -41.51833 -39.67979 -38.04835 -35.76852 -34.47568 -32.35488 -31.69616 -30.09723 -27.86212 -27.36066 -26.78640 -25.40677 -23.85550 -22.74133 -21.97802 -20.37541 -20.23871 -19.11371 -18.20350 -17.84401 -17.44442 -17.25316 -16.90583 -16.43794 -15.99500 -15.64293 -15.47462 -15.14463 -15.06506 -14.96318 -14.63878 -14.60539 -14.49170 -14.28027 -14.01256 -13.64233 -13.37694 -13.21916 -12.98227 -12.89399 -12.82261 -12.60675 -12.51182 -12.38046 -12.26248 -12.07998 -12.05160 -11.98071 -11.55364 -11.47875 -11.17880 -11.01794 -10.69501 -10.49602 -9.90783 -8.54219 -7.79151 -5.24418 1.40960 1.44272 1.52131 1.64230 2.24379 2.46612 2.52186 2.71350 3.12521 3.17493 3.36779 3.40982 3.66366 3.90791 4.03805 4.09008 4.13893 4.21490 4.31580 4.42257 4.53231 4.58437 4.61251 4.68288 4.76146 4.83101 4.86608 4.87661 4.97155 5.00423 5.07905 5.12660 5.15597 5.25196 5.30576 5.36382 5.59915 5.65472 5.73331 5.78222 5.79202 6.47374 6.71504 7.21898 7.39236 7.96379 8.47065 9.25936 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.005356 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.331359 B = 5226.524841 C = 6198.708247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.064 0.936 8 N -0.683 5.683 9 C 0.528 3.472 10 O -0.588 6.588 11 C -0.100 4.100 12 C -0.132 4.132 13 C -0.127 4.127 14 C 0.262 3.738 15 F -0.177 7.177 16 F -0.195 7.195 17 C -0.150 4.150 18 C 0.171 3.829 19 N -0.593 5.593 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.944 3.056 25 H -0.255 1.255 26 H -0.300 1.300 27 H -0.304 1.304 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.049 0.951 44 H -0.008 1.008 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -9.348 15.299 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.082 0.918 8 N -0.333 5.333 9 C 0.314 3.686 10 O -0.469 6.469 11 C -0.103 4.103 12 C -0.189 4.189 13 C -0.165 4.165 14 C 0.226 3.774 15 F -0.158 7.158 16 F -0.176 7.176 17 C -0.188 4.188 18 C 0.044 3.956 19 N -0.316 5.316 20 C -0.359 4.359 21 H 0.097 0.903 22 C -0.250 4.250 23 N -0.587 5.587 24 Si 0.774 3.226 25 H -0.179 1.179 26 H -0.227 1.227 27 H -0.232 1.232 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.131 0.869 43 H 0.067 0.933 44 H 0.010 0.990 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.112 -9.233 14.728 17.419 hybrid contribution -0.311 -0.227 -1.685 1.728 sum -1.423 -9.460 13.043 16.176 Atomic orbital electron populations 1.21721 0.94652 1.01509 1.00690 1.20871 0.94159 0.93072 0.87178 0.97182 1.22020 0.94619 1.01129 0.97925 1.21663 0.97344 0.99814 0.96011 1.21468 0.96296 0.82621 0.97497 0.91831 1.45693 1.29731 1.07607 1.50317 1.20340 0.83596 0.86502 0.78168 1.90669 1.27822 1.85596 1.42778 1.21812 0.98155 0.91156 0.99225 1.21726 0.89938 1.04639 1.02562 1.24073 1.06836 0.89261 0.96338 1.21873 0.72399 0.83305 0.99867 1.92990 1.44406 1.81704 1.96699 1.92996 1.55185 1.75432 1.93993 1.24097 1.04149 0.92376 0.98193 1.20858 0.84185 0.95176 0.95419 1.44272 1.02098 1.65420 1.19843 1.19453 0.95127 1.35067 0.86206 0.90324 1.25715 0.98797 1.01499 0.98986 1.70168 1.25339 1.47071 1.16090 0.85530 0.79035 0.78044 0.79968 1.17903 1.22740 1.23156 0.92645 0.90760 0.94808 0.91482 0.89343 0.89440 0.91250 0.75425 0.93281 0.88775 0.90081 0.85965 0.84949 0.88554 0.86917 0.93263 0.99050 0.95046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 7.95 71.98 0.57 -3.49 16 2 C 0.15 5.42 3.51 45.12 0.16 5.58 16 3 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 4 C -0.12 -3.02 5.23 30.82 0.16 -2.86 16 5 C -0.11 -2.93 5.58 30.62 0.17 -2.76 16 6 C 0.13 4.55 2.81 45.07 0.13 4.67 16 7 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 8 N -0.68 -21.52 4.80 -442.16 -2.12 -23.65 16 9 C 0.53 18.14 6.89 87.66 0.60 18.75 16 10 O -0.59 -25.78 15.57 -3.06 -0.05 -25.83 16 11 C -0.10 -2.58 1.26 -52.40 -0.07 -2.65 16 12 C -0.13 -3.19 8.95 71.98 0.64 -2.54 16 13 C -0.13 -2.36 6.99 31.12 0.22 -2.15 16 14 C 0.26 5.83 3.26 31.11 0.10 5.93 16 15 F -0.18 -4.00 15.52 44.97 0.70 -3.30 16 16 F -0.20 -4.75 17.41 44.97 0.78 -3.97 16 17 C -0.15 -3.94 6.78 31.10 0.21 -3.73 16 18 C 0.17 8.13 4.88 86.36 0.42 8.55 16 19 N -0.59 -26.92 2.90 -674.43 -1.96 -28.87 16 20 C -0.23 -11.55 8.59 84.03 0.72 -10.83 16 21 H 0.08 3.79 6.22 -2.91 -0.02 3.77 16 22 C -0.06 -3.08 4.97 84.86 0.42 -2.65 16 23 N -0.94 -57.08 11.13 21.65 0.24 -56.84 16 24 Si 0.94 45.17 29.58 68.60 2.03 47.20 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 27 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 28 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.03 1.23 7.62 -2.39 -0.02 1.21 16 31 H 0.07 1.59 6.40 -2.39 -0.02 1.57 16 32 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.41 10.60 5.68 -92.71 -0.53 10.08 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.87 6.20 -2.39 -0.01 1.86 16 38 H 0.08 1.79 7.04 -2.38 -0.02 1.77 16 39 H 0.12 2.16 8.09 -2.38 -0.02 2.14 16 40 H 0.13 1.67 8.10 -2.39 -0.02 1.66 16 41 H 0.10 2.51 8.10 -2.38 -0.02 2.49 16 42 H 0.11 3.25 7.43 -2.38 -0.02 3.24 16 43 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -69.69 353.19 4.57 -65.12 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.48 Total: 20.32 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 4.47 Total: 9.82 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.84 Total: -109.36 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 1.48 Total: -7.27 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.69 4.57 -65.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.773 kcal (2) G-P(sol) polarization free energy of solvation -69.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds