Wall clock time and date at job start Tue Mar 31 2020 11:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 C 1.50702 * 109.46837 * 119.99775 * 2 1 3 5 5 O 1.21281 * 120.00342 * 126.45153 * 4 2 1 6 6 N 1.34776 * 119.99928 * 306.44710 * 4 2 1 7 7 C 1.47899 * 134.34252 * 175.04052 * 6 4 2 8 8 C 1.52369 * 85.58826 * 156.53810 * 7 6 4 9 9 C 1.47894 * 134.34436 * 355.07074 * 6 4 2 10 10 C 1.53654 * 116.39776 * 141.35358 * 8 7 6 11 11 C 1.54605 * 102.73531 * 162.91197 * 10 8 7 12 12 N 1.47132 * 107.36365 * 339.24436 * 11 10 8 13 13 C 1.36935 * 125.58851 * 179.07038 * 12 11 10 14 14 H 1.07997 * 120.00357 * 179.97438 * 13 12 11 15 15 C 1.38814 * 120.00002 * 359.97438 * 13 12 11 16 16 N 1.31620 * 119.99579 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46643 * 120.00223 * 17 15 13 20 20 H 1.48498 * 109.47320 * 239.99610 * 17 15 13 21 21 C 1.47730 * 108.82720 * 359.07434 * 12 11 10 22 22 C 1.52994 * 109.47585 * 239.99556 * 2 1 3 23 23 C 1.53004 * 109.47223 * 59.99994 * 22 2 1 24 24 F 1.39896 * 109.47729 * 180.02562 * 22 2 1 25 25 F 1.39907 * 109.47322 * 300.00447 * 22 2 1 26 26 H 1.08999 * 109.47181 * 300.00556 * 1 2 3 27 27 H 1.09005 * 109.46780 * 60.00305 * 1 2 3 28 28 H 1.08999 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47098 * 185.13627 * 3 2 1 30 30 H 1.08998 * 109.47372 * 305.13377 * 3 2 1 31 31 H 1.08993 * 109.47406 * 65.13548 * 3 2 1 32 32 H 1.08997 * 113.85333 * 42.36971 * 7 6 4 33 33 H 1.08998 * 113.96849 * 270.71825 * 7 6 4 34 34 H 1.09003 * 113.85099 * 89.29756 * 9 6 4 35 35 H 1.08997 * 113.85318 * 317.63097 * 9 6 4 36 36 H 1.09004 * 110.75441 * 281.22427 * 10 8 7 37 37 H 1.09004 * 110.75976 * 44.60074 * 10 8 7 38 38 H 1.09003 * 109.86632 * 98.68559 * 11 10 8 39 39 H 1.08992 * 109.86414 * 219.66264 * 11 10 8 40 40 H 0.97004 * 119.99587 * 180.02562 * 16 15 13 41 41 H 1.09000 * 110.40009 * 263.65741 * 21 12 11 42 42 H 1.08998 * 110.40089 * 141.24650 * 21 12 11 43 43 H 1.08999 * 109.46459 * 59.99992 * 23 22 2 44 44 H 1.08995 * 109.47279 * 179.97438 * 23 22 2 45 45 H 1.09004 * 109.46862 * 300.00616 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.8227 -1.6239 1.1232 6 7 1.6031 -0.3304 2.4503 7 6 1.8038 -0.8434 3.8229 8 6 1.4693 0.5728 4.2748 9 6 0.7436 0.7650 2.9489 10 6 0.6151 0.7005 5.5456 11 6 0.8382 2.1733 5.9596 12 7 2.0834 2.6256 5.3194 13 6 2.6220 3.8803 5.4221 14 1 3.5447 4.1153 4.9124 15 6 1.9822 4.8504 6.1814 16 7 0.8574 4.5641 6.8022 17 14 2.7173 6.5618 6.3221 18 1 3.9752 6.6265 5.5355 19 1 1.7523 7.5599 5.7947 20 1 3.0083 6.8600 7.7474 21 6 2.6572 1.5042 4.5476 22 6 2.0401 -0.7213 -1.2491 23 6 1.5301 -0.0002 -2.4985 24 9 3.4390 -0.7218 -1.2488 25 9 1.5737 -2.0404 -1.2491 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1262 1.4439 -0.0920 30 1 1.6036 1.9822 -0.8404 31 1 1.7538 1.9291 0.9323 32 1 2.8299 -1.1432 4.0357 33 1 1.0697 -1.5887 4.1288 34 1 -0.3161 0.5119 2.9856 35 1 0.9374 1.7276 2.4757 36 1 -0.4362 0.5163 5.3246 37 1 0.9725 0.0229 6.3211 38 1 0.0029 2.7847 5.6180 39 1 0.9297 2.2436 7.0434 40 1 0.4101 5.2421 7.3325 41 1 3.4173 0.9887 5.1346 42 1 3.0800 1.8653 3.6101 43 1 1.8935 1.0275 -2.4984 44 1 1.8939 -0.5138 -3.3884 45 1 0.4401 -0.0001 -2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073154276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:20 Heat of formation + Delta-G solvation = -71.693401 kcal Electronic energy + Delta-G solvation = -28548.565222 eV Core-core repulsion = 24432.025775 eV Total energy + Delta-G solvation = -4116.539447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.93205 -46.89227 -40.77886 -38.61891 -35.99636 -35.62471 -32.26577 -30.56805 -29.51754 -28.28146 -27.67326 -26.30114 -25.91056 -24.98407 -23.68644 -21.18896 -20.30145 -19.06868 -18.42328 -17.38323 -17.25073 -16.94901 -16.72296 -15.83802 -15.44757 -15.34875 -14.78904 -14.46414 -14.33276 -13.82134 -13.64278 -13.56419 -13.32094 -13.23883 -13.16680 -12.85560 -12.64492 -12.55744 -12.39832 -12.26843 -12.06250 -11.98125 -11.80337 -11.69521 -11.48888 -11.14693 -10.96461 -10.86458 -10.70948 -10.43595 -10.21134 -10.09937 -9.89814 -9.71282 -9.42666 -8.65048 -8.56446 -6.89035 -5.76550 -3.10019 2.62733 2.77360 3.36200 3.42734 3.44572 3.54268 3.85331 4.05881 4.21731 4.42895 4.56948 4.64491 4.71521 4.71825 4.95575 5.12071 5.19373 5.26528 5.33214 5.40302 5.42953 5.44545 5.45624 5.46956 5.55369 5.62702 5.68266 5.70551 5.77002 5.83193 5.90805 6.06283 6.11462 6.18724 6.42255 6.47285 6.62731 6.68165 7.51055 7.55426 7.76712 7.77821 8.16875 8.19777 9.17066 9.76638 10.42042 11.35050 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.003640 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.309874 B = 7690.111204 C = 8324.669271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.545 3.455 5 O -0.531 6.531 6 N -0.635 5.635 7 C 0.123 3.877 8 C -0.104 4.104 9 C 0.118 3.882 10 C -0.131 4.131 11 C 0.179 3.821 12 N -0.605 5.605 13 C -0.228 4.228 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.162 3.838 22 C 0.312 3.688 23 C -0.198 4.198 24 F -0.190 7.190 25 F -0.195 7.195 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.252 0.748 41 H 0.025 0.975 42 H 0.039 0.961 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -8.616 -14.345 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.207 4.207 4 C 0.333 3.667 5 O -0.408 6.408 6 N -0.370 5.370 7 C 0.000 4.000 8 C -0.105 4.105 9 C -0.004 4.004 10 C -0.170 4.170 11 C 0.054 3.946 12 N -0.331 5.331 13 C -0.356 4.356 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.569 5.569 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.036 3.964 22 C 0.275 3.725 23 C -0.255 4.255 24 F -0.171 7.171 25 F -0.176 7.176 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.849 -8.994 -14.499 17.490 hybrid contribution 0.366 0.772 0.180 0.874 sum -3.483 -8.221 -14.318 16.874 Atomic orbital electron populations 1.22010 0.90570 1.03697 1.04226 1.21820 0.99410 0.98558 0.92596 1.22017 1.02663 0.91502 1.04483 1.19681 0.81181 0.82981 0.82886 1.90752 1.34013 1.30354 1.85664 1.50087 1.50052 1.31867 1.05035 1.23011 1.02312 0.96544 0.78084 1.22464 0.98851 0.94548 0.94664 1.23188 0.94717 0.90581 0.91933 1.22682 0.98081 1.01075 0.95200 1.21201 0.89143 0.87238 0.97012 1.44569 1.24666 1.07686 1.56221 1.19089 1.05066 0.85673 1.25752 0.90444 1.24776 0.97397 0.98315 0.99799 1.69967 1.17883 1.32913 1.36134 0.86069 0.78152 0.84246 0.77446 1.20521 1.21764 1.21743 1.21038 0.91982 0.88401 0.94994 1.20630 0.76117 0.79505 0.96198 1.22896 1.04018 1.02609 0.95984 1.93028 1.30069 1.96488 1.97467 1.93008 1.88289 1.38787 1.97514 0.90198 0.90567 0.91297 0.90960 0.90556 0.89912 0.89979 0.89693 0.89589 0.89204 0.91732 0.91674 0.93456 0.93839 0.93807 0.95709 0.94235 0.88839 0.89849 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.82 37.16 0.29 -1.08 16 2 C -0.12 -1.44 0.27 -155.66 -0.04 -1.49 16 3 C -0.15 -1.61 7.85 37.16 0.29 -1.31 16 4 C 0.54 8.62 6.48 -10.98 -0.07 8.55 16 5 O -0.53 -10.51 15.59 5.56 0.09 -10.42 16 6 N -0.64 -9.20 3.52 -186.90 -0.66 -9.86 16 7 C 0.12 1.72 8.21 -3.60 -0.03 1.69 16 8 C -0.10 -1.61 0.99 -154.85 -0.15 -1.76 16 9 C 0.12 1.58 5.62 -3.60 -0.02 1.56 16 10 C -0.13 -2.14 6.36 -25.55 -0.16 -2.30 16 11 C 0.18 3.98 5.39 -2.85 -0.02 3.97 16 12 N -0.60 -14.48 3.41 -170.50 -0.58 -15.06 16 13 C -0.23 -6.07 10.28 -15.06 -0.15 -6.23 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 16 N -0.92 -25.91 10.30 55.49 0.57 -25.33 16 17 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.16 3.17 6.63 -3.16 -0.02 3.14 16 22 C 0.31 3.92 1.16 -26.73 -0.03 3.89 16 23 C -0.20 -1.56 8.68 37.16 0.32 -1.24 16 24 F -0.19 -2.93 15.39 2.25 0.03 -2.89 16 25 F -0.20 -2.87 15.78 2.25 0.04 -2.83 16 26 H 0.08 0.72 5.62 -51.93 -0.29 0.43 16 27 H 0.08 0.51 6.43 -51.93 -0.33 0.17 16 28 H 0.07 0.68 7.80 -51.93 -0.41 0.27 16 29 H 0.07 0.86 7.66 -51.92 -0.40 0.46 16 30 H 0.08 0.59 6.72 -51.93 -0.35 0.25 16 31 H 0.08 0.95 5.47 -51.93 -0.28 0.67 16 32 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.98 7.63 -51.93 -0.40 0.58 16 35 H 0.09 1.25 6.00 -51.93 -0.31 0.94 16 36 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 39 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 43 H 0.09 0.61 6.55 -51.93 -0.34 0.27 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.56 6.43 -51.93 -0.33 0.22 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -32.76 350.16 -6.86 -39.62 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.71 Total: -2.03 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 0.11 Total: 7.12 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.67 Total: -50.25 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.07 Total: -5.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.76 -6.86 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073154276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.074 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds