Wall clock time and date at job start Tue Mar 31 2020 11:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 112.90924 * 2 1 4 4 O 1.21277 * 120.00025 * 228.74937 * 3 2 1 5 5 N 1.34774 * 119.99787 * 48.74744 * 3 2 1 6 6 C 1.46505 * 119.99674 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.47112 * 34.99537 * 6 5 3 8 8 C 1.53006 * 109.46957 * 274.99823 * 6 5 3 9 9 C 1.52995 * 109.46905 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47285 * 60.00023 * 9 8 6 11 11 C 1.52998 * 109.47351 * 299.99736 * 10 9 8 12 12 C 1.52997 * 109.47003 * 154.99988 * 6 5 3 13 13 H 1.09002 * 109.47508 * 59.99649 * 12 6 5 14 14 N 1.46507 * 109.47247 * 299.99721 * 12 6 5 15 15 C 1.36932 * 119.99916 * 155.00133 * 14 12 6 16 16 H 1.08002 * 120.00508 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00052 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99520 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00435 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47081 * 89.99648 * 19 17 15 21 21 H 1.48495 * 109.47500 * 209.99957 * 19 17 15 22 22 H 1.48506 * 109.47095 * 329.99899 * 19 17 15 23 23 C 1.53786 * 113.61361 * 228.74529 * 2 1 3 24 24 C 1.53781 * 87.17350 * 220.06273 * 23 2 1 25 25 F 1.39895 * 113.61535 * 139.93941 * 24 23 2 26 26 F 1.39900 * 113.61455 * 270.76315 * 24 23 2 27 27 C 1.53782 * 87.08260 * 25.39213 * 24 23 2 28 28 H 1.09004 * 109.47331 * 191.25073 * 1 2 3 29 29 H 1.08994 * 109.47141 * 311.25319 * 1 2 3 30 30 H 1.09001 * 109.47183 * 71.25448 * 1 2 3 31 31 H 0.96998 * 120.00410 * 359.97438 * 5 3 2 32 32 H 1.09002 * 109.46859 * 299.99926 * 8 6 5 33 33 H 1.08996 * 109.47072 * 59.99951 * 8 6 5 34 34 H 1.09002 * 109.47045 * 299.99498 * 9 8 6 35 35 H 1.09002 * 109.46985 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.46768 * 180.02562 * 10 9 8 37 37 H 1.08992 * 109.47042 * 60.00055 * 10 9 8 38 38 H 1.09002 * 109.46833 * 300.00435 * 11 10 9 39 39 H 1.08993 * 109.47775 * 180.02562 * 11 10 9 40 40 H 0.96999 * 119.99420 * 335.00093 * 14 12 6 41 41 H 0.97005 * 119.99860 * 179.97438 * 18 17 15 42 42 H 1.09002 * 113.61357 * 105.47190 * 23 2 1 43 43 H 1.09002 * 113.61608 * 334.65352 * 23 2 1 44 44 H 1.08997 * 113.61668 * 89.11298 * 27 24 23 45 45 H 1.08998 * 113.61674 * 219.93807 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1166 1.3881 0.0000 4 8 2.9906 1.6771 -0.7896 5 7 1.6700 2.3084 0.8775 6 6 2.2399 3.6580 0.8771 7 1 2.4841 3.9490 -0.1445 8 6 3.5102 3.6754 1.7298 9 6 4.1050 5.0850 1.7299 10 6 3.0871 6.0681 2.3113 11 6 1.8168 6.0508 1.4587 12 6 1.2221 4.6415 1.4582 13 1 0.9779 4.3505 2.4798 14 7 0.0058 4.6249 0.6417 15 6 -1.1936 4.9896 1.1926 16 1 -1.2431 5.2891 2.2291 17 6 -2.3462 4.9733 0.4192 18 7 -2.2860 4.6078 -0.8438 19 14 -3.9825 5.4701 1.1707 20 1 -4.1841 6.9310 0.9963 21 1 -5.0814 4.7346 0.4950 22 1 -3.9829 5.1398 2.6186 23 6 2.1460 -0.9292 -1.0593 24 6 3.1927 -1.3160 -0.0012 25 9 3.5141 -2.6776 -0.0025 26 9 4.3226 -0.4911 -0.0029 27 6 2.1480 -0.9307 1.0594 28 1 -0.3634 -1.0079 0.2005 29 1 -0.3633 0.6776 0.7726 30 1 -0.3633 0.3303 -0.9732 31 1 0.9707 2.0774 1.5088 32 1 3.2660 3.3844 2.7515 33 1 4.2353 2.9747 1.3159 34 1 4.3492 5.3764 0.7083 35 1 5.0103 5.0973 2.3370 36 1 3.5108 7.0725 2.3109 37 1 2.8430 5.7767 3.3328 38 1 2.0610 6.3422 0.4371 39 1 1.0917 6.7515 1.8725 40 1 0.0502 4.3555 -0.2891 41 1 -3.0915 4.5961 -1.3842 42 1 2.5650 -0.3990 -1.9146 43 1 1.4939 -1.7528 -1.3500 44 1 1.4955 -1.7543 1.3490 45 1 2.5688 -0.4030 1.9153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085390048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:31 Heat of formation + Delta-G solvation = -121.500861 kcal Electronic energy + Delta-G solvation = -28377.394340 eV Core-core repulsion = 24258.695079 eV Total energy + Delta-G solvation = -4118.699261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.78290 -47.10688 -40.38963 -38.50619 -36.70369 -34.07626 -33.80042 -31.17975 -30.05245 -28.91400 -27.65382 -26.41010 -24.08202 -23.71576 -22.28661 -21.20873 -20.95201 -19.85941 -18.78576 -17.45422 -17.22658 -16.69729 -16.45694 -16.32635 -15.86488 -15.10085 -14.63330 -14.36099 -13.99843 -13.92788 -13.76869 -13.59421 -13.40215 -13.25916 -13.11355 -12.97915 -12.78365 -12.66099 -12.42296 -12.22442 -12.07971 -12.00739 -11.11253 -11.05697 -10.95399 -10.89305 -10.82983 -10.76742 -10.57686 -10.49606 -10.33777 -10.20134 -9.78347 -9.67093 -9.46130 -8.95475 -8.59040 -7.02780 -5.82388 -3.11999 2.81248 3.35190 3.38036 3.42637 3.43502 3.45122 3.71052 4.15273 4.19193 4.37973 4.51586 4.92169 5.05867 5.13542 5.19487 5.21101 5.27798 5.30920 5.38532 5.49477 5.51539 5.65608 5.70334 5.74984 5.80053 5.85813 5.88139 5.93180 5.95969 5.97366 6.10938 6.25718 6.32663 6.44461 6.47185 6.49928 6.56927 6.84224 6.88227 7.06408 7.63474 7.87843 8.34758 8.54263 9.46773 10.03038 10.38656 11.39436 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.004691 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.183398 B = 5967.039112 C = 7727.477996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.535 3.465 4 O -0.534 6.534 5 N -0.701 5.701 6 C 0.142 3.858 7 H 0.084 0.916 8 C -0.124 4.124 9 C -0.114 4.114 10 C -0.119 4.119 11 C -0.133 4.133 12 C 0.173 3.827 13 H 0.050 0.950 14 N -0.721 5.721 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.009 4.009 18 N -0.929 5.929 19 Si 0.904 3.096 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.144 4.144 24 C 0.254 3.746 25 F -0.195 7.195 26 F -0.168 7.168 27 C -0.149 4.149 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.403 0.597 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 -9.773 5.217 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.106 4.106 3 C 0.319 3.681 4 O -0.411 6.411 5 N -0.350 5.350 6 C 0.036 3.964 7 H 0.102 0.898 8 C -0.163 4.163 9 C -0.152 4.152 10 C -0.157 4.157 11 C -0.174 4.174 12 C 0.063 3.937 13 H 0.068 0.932 14 N -0.362 5.362 15 C -0.372 4.372 16 H 0.087 0.913 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.735 3.265 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.182 4.182 24 C 0.217 3.783 25 F -0.176 7.176 26 F -0.149 7.149 27 C -0.187 4.187 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.238 0.762 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.092 -9.531 4.746 14.671 hybrid contribution -1.143 0.131 0.340 1.200 sum 8.949 -9.400 5.086 13.940 Atomic orbital electron populations 1.21676 0.89986 1.02788 1.04436 1.21780 0.98564 0.92830 0.97435 1.19588 0.82196 0.85526 0.80806 1.90695 1.30985 1.80190 1.39198 1.45808 1.40572 1.11645 1.36948 1.21312 0.92830 0.81419 1.00791 0.89780 1.21872 0.97178 0.97319 0.99957 1.21467 0.97838 0.94644 1.01220 1.21580 0.96235 0.98434 0.99497 1.22208 0.95700 0.99919 0.99560 1.20453 0.86595 0.91671 0.95016 0.93212 1.42411 1.02074 1.80397 1.11309 1.19195 0.85223 1.37542 0.95193 0.91250 1.24715 0.97765 1.02259 0.95850 1.69671 1.27876 1.53875 1.06255 0.86254 0.84100 0.78092 0.78075 1.21782 1.21859 1.20823 1.24048 0.95832 0.99836 0.98496 1.22018 0.82797 0.72505 1.00943 1.92989 1.94421 1.32893 1.97275 1.93082 1.53703 1.70917 1.97148 1.24216 0.96527 1.00400 0.97581 0.91464 0.90780 0.90779 0.76213 0.92113 0.91849 0.91972 0.92402 0.92694 0.92406 0.92463 0.91612 0.78130 0.93523 0.87489 0.86527 0.86100 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.12 37.16 0.34 -1.19 16 2 C -0.10 -1.27 1.27 -154.75 -0.20 -1.47 16 3 C 0.53 8.55 6.35 -10.99 -0.07 8.48 16 4 O -0.53 -10.27 14.39 5.56 0.08 -10.19 16 5 N -0.70 -10.92 4.79 -53.81 -0.26 -11.18 16 6 C 0.14 2.34 1.98 -67.93 -0.13 2.21 16 7 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 8 C -0.12 -1.76 5.50 -26.73 -0.15 -1.90 16 9 C -0.11 -1.48 5.92 -26.74 -0.16 -1.64 16 10 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 11 C -0.13 -2.26 5.50 -26.75 -0.15 -2.40 16 12 C 0.17 3.15 2.29 -67.95 -0.16 3.00 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 14 N -0.72 -16.60 4.95 -53.44 -0.26 -16.87 16 15 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 16 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 19 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C -0.14 -1.70 6.81 -25.92 -0.18 -1.87 16 24 C 0.25 3.19 3.26 -25.92 -0.08 3.11 16 25 F -0.19 -2.46 17.41 2.25 0.04 -2.42 16 26 F -0.17 -2.62 15.72 2.25 0.04 -2.59 16 27 C -0.15 -1.53 7.01 -25.82 -0.18 -1.71 16 28 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 29 H 0.07 0.93 7.00 -51.93 -0.36 0.57 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.40 5.90 7.49 -40.82 -0.31 5.60 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.11 1.44 7.43 -51.93 -0.39 1.06 16 43 H 0.12 1.05 8.10 -51.93 -0.42 0.63 16 44 H 0.12 0.93 7.96 -51.93 -0.41 0.51 16 45 H 0.09 0.96 8.10 -51.93 -0.42 0.53 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -30.05 364.46 -7.89 -37.95 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.20 Total: 13.30 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.52 Total: -3.83 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.20 Total: -54.06 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.07 Total: -5.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.05 -7.89 -37.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085390048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.553 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds