Wall clock time and date at job start Tue Mar 31 2020 11:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 112.90924 * 2 1 4 4 O 1.21277 * 120.00025 * 228.74937 * 3 2 1 5 5 N 1.34774 * 119.99787 * 48.74744 * 3 2 1 6 6 C 1.46505 * 119.99674 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.47112 * 34.99537 * 6 5 3 8 8 C 1.53006 * 109.46957 * 274.99823 * 6 5 3 9 9 C 1.52995 * 109.46905 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47285 * 60.00023 * 9 8 6 11 11 C 1.52998 * 109.47351 * 299.99736 * 10 9 8 12 12 C 1.52997 * 109.47003 * 154.99988 * 6 5 3 13 13 H 1.09002 * 109.47508 * 59.99649 * 12 6 5 14 14 N 1.46507 * 109.47247 * 299.99721 * 12 6 5 15 15 C 1.36932 * 119.99916 * 155.00133 * 14 12 6 16 16 H 1.08002 * 120.00508 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00052 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99520 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00435 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47081 * 89.99648 * 19 17 15 21 21 H 1.48495 * 109.47500 * 209.99957 * 19 17 15 22 22 H 1.48506 * 109.47095 * 329.99899 * 19 17 15 23 23 C 1.53786 * 113.61361 * 228.74529 * 2 1 3 24 24 C 1.53781 * 87.17350 * 220.06273 * 23 2 1 25 25 F 1.39895 * 113.61535 * 139.93941 * 24 23 2 26 26 F 1.39900 * 113.61455 * 270.76315 * 24 23 2 27 27 C 1.53782 * 87.08260 * 25.39213 * 24 23 2 28 28 H 1.09004 * 109.47331 * 191.25073 * 1 2 3 29 29 H 1.08994 * 109.47141 * 311.25319 * 1 2 3 30 30 H 1.09001 * 109.47183 * 71.25448 * 1 2 3 31 31 H 0.96998 * 120.00410 * 359.97438 * 5 3 2 32 32 H 1.09002 * 109.46859 * 299.99926 * 8 6 5 33 33 H 1.08996 * 109.47072 * 59.99951 * 8 6 5 34 34 H 1.09002 * 109.47045 * 299.99498 * 9 8 6 35 35 H 1.09002 * 109.46985 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.46768 * 180.02562 * 10 9 8 37 37 H 1.08992 * 109.47042 * 60.00055 * 10 9 8 38 38 H 1.09002 * 109.46833 * 300.00435 * 11 10 9 39 39 H 1.08993 * 109.47775 * 180.02562 * 11 10 9 40 40 H 0.96999 * 119.99420 * 335.00093 * 14 12 6 41 41 H 0.97005 * 119.99860 * 179.97438 * 18 17 15 42 42 H 1.09002 * 113.61357 * 105.47190 * 23 2 1 43 43 H 1.09002 * 113.61608 * 334.65352 * 23 2 1 44 44 H 1.08997 * 113.61668 * 89.11298 * 27 24 23 45 45 H 1.08998 * 113.61674 * 219.93807 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1166 1.3881 0.0000 4 8 2.9906 1.6771 -0.7896 5 7 1.6700 2.3084 0.8775 6 6 2.2399 3.6580 0.8771 7 1 2.4841 3.9490 -0.1445 8 6 3.5102 3.6754 1.7298 9 6 4.1050 5.0850 1.7299 10 6 3.0871 6.0681 2.3113 11 6 1.8168 6.0508 1.4587 12 6 1.2221 4.6415 1.4582 13 1 0.9779 4.3505 2.4798 14 7 0.0058 4.6249 0.6417 15 6 -1.1936 4.9896 1.1926 16 1 -1.2431 5.2891 2.2291 17 6 -2.3462 4.9733 0.4192 18 7 -2.2860 4.6078 -0.8438 19 14 -3.9825 5.4701 1.1707 20 1 -4.1841 6.9310 0.9963 21 1 -5.0814 4.7346 0.4950 22 1 -3.9829 5.1398 2.6186 23 6 2.1460 -0.9292 -1.0593 24 6 3.1927 -1.3160 -0.0012 25 9 3.5141 -2.6776 -0.0025 26 9 4.3226 -0.4911 -0.0029 27 6 2.1480 -0.9307 1.0594 28 1 -0.3634 -1.0079 0.2005 29 1 -0.3633 0.6776 0.7726 30 1 -0.3633 0.3303 -0.9732 31 1 0.9707 2.0774 1.5088 32 1 3.2660 3.3844 2.7515 33 1 4.2353 2.9747 1.3159 34 1 4.3492 5.3764 0.7083 35 1 5.0103 5.0973 2.3370 36 1 3.5108 7.0725 2.3109 37 1 2.8430 5.7767 3.3328 38 1 2.0610 6.3422 0.4371 39 1 1.0917 6.7515 1.8725 40 1 0.0502 4.3555 -0.2891 41 1 -3.0915 4.5961 -1.3842 42 1 2.5650 -0.3990 -1.9146 43 1 1.4939 -1.7528 -1.3500 44 1 1.4955 -1.7543 1.3490 45 1 2.5688 -0.4030 1.9153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085390048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:31 Heat of formation + Delta-G solvation = -139.745710 kcal Electronic energy + Delta-G solvation = -28378.185496 eV Core-core repulsion = 24258.695079 eV Total energy + Delta-G solvation = -4119.490417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.80790 -48.14650 -41.59398 -39.77302 -37.90764 -35.79794 -35.15102 -32.97893 -31.16558 -30.13624 -29.17119 -27.29818 -25.67431 -25.10499 -23.42674 -22.59743 -22.16925 -21.13883 -20.04468 -19.09012 -18.44215 -17.79632 -17.56608 -17.45034 -17.10369 -16.70548 -15.89507 -15.87482 -15.37931 -15.23934 -14.99278 -14.81979 -14.62040 -14.43130 -14.31942 -14.25094 -14.03020 -13.65213 -13.60570 -13.49836 -13.24666 -13.14400 -12.91160 -12.78923 -12.23776 -12.17667 -12.04926 -12.01202 -11.95756 -11.87391 -11.63112 -11.43751 -11.43290 -11.11306 -10.96010 -10.66203 -9.92562 -8.96973 -7.88508 -5.17221 1.50171 1.51688 1.58606 1.59173 2.17124 2.48353 2.59019 2.77983 3.17310 3.22039 3.39796 3.45829 3.68487 3.81123 3.87554 4.13892 4.21969 4.26082 4.32177 4.34937 4.44067 4.47836 4.50571 4.56744 4.59339 4.68223 4.70312 4.89091 4.90716 4.95043 4.99681 5.03584 5.17159 5.23867 5.29407 5.30518 5.31825 5.47102 5.54392 5.58975 5.69319 6.30931 6.61158 7.28532 7.38237 8.11304 8.36225 9.34353 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.004691 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.183398 B = 5967.039112 C = 7727.477996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.526 3.474 4 O -0.574 6.574 5 N -0.698 5.698 6 C 0.149 3.851 7 H 0.050 0.950 8 C -0.114 4.114 9 C -0.111 4.111 10 C -0.109 4.109 11 C -0.129 4.129 12 C 0.174 3.826 13 H 0.060 0.940 14 N -0.730 5.730 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.070 4.070 18 N -0.968 5.968 19 Si 0.965 3.035 20 H -0.296 1.296 21 H -0.300 1.300 22 H -0.266 1.266 23 C -0.141 4.141 24 C 0.240 3.760 25 F -0.194 7.194 26 F -0.191 7.191 27 C -0.128 4.128 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.409 0.591 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.369 0.631 41 H 0.247 0.753 42 H 0.082 0.918 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.655 -10.776 7.836 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.107 4.107 3 C 0.312 3.688 4 O -0.453 6.453 5 N -0.347 5.347 6 C 0.043 3.957 7 H 0.068 0.932 8 C -0.153 4.153 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.170 4.170 12 C 0.065 3.935 13 H 0.078 0.922 14 N -0.369 5.369 15 C -0.361 4.361 16 H 0.096 0.904 17 C -0.262 4.262 18 N -0.619 5.619 19 Si 0.795 3.205 20 H -0.223 1.223 21 H -0.227 1.227 22 H -0.191 1.191 23 C -0.179 4.179 24 C 0.204 3.796 25 F -0.175 7.175 26 F -0.172 7.172 27 C -0.166 4.166 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.245 0.755 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.200 0.800 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.168 0.832 44 H 0.177 0.823 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.172 -10.527 7.431 16.417 hybrid contribution -1.084 0.462 -0.496 1.278 sum 9.088 -10.065 6.935 15.232 Atomic orbital electron populations 1.21654 0.89109 1.04704 1.02779 1.21702 0.98884 0.90829 0.99271 1.20296 0.81619 0.86976 0.79874 1.90673 1.32857 1.81188 1.40589 1.45804 1.40588 1.11250 1.37045 1.21137 0.93604 0.81603 0.99312 0.93195 1.21795 0.95334 0.98069 1.00136 1.21474 0.98703 0.93491 1.01226 1.21508 0.94217 0.99701 0.99270 1.22091 0.97282 0.98239 0.99340 1.20638 0.85335 0.92947 0.94595 0.92230 1.42561 1.03139 1.80260 1.10925 1.19554 0.85983 1.35259 0.95352 0.90370 1.25418 1.00927 1.03579 0.96286 1.69835 1.28078 1.56272 1.07676 0.85266 0.80192 0.77009 0.78020 1.22327 1.22715 1.19086 1.24144 0.96003 1.00385 0.97382 1.22352 0.82405 0.72225 1.02592 1.92987 1.94439 1.32709 1.97375 1.93034 1.55132 1.71716 1.97339 1.24255 0.95453 1.00537 0.96320 0.87686 0.91894 0.93015 0.75526 0.90160 0.92857 0.93071 0.89607 0.90959 0.90821 0.94277 0.93073 0.80013 0.94363 0.89938 0.83231 0.82326 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.12 71.98 0.66 -2.06 16 2 C -0.10 -2.44 1.27 -52.34 -0.07 -2.51 16 3 C 0.53 17.08 6.35 87.66 0.56 17.64 16 4 O -0.57 -23.03 14.39 -3.02 -0.04 -23.07 16 5 N -0.70 -21.82 4.79 -442.54 -2.12 -23.94 16 6 C 0.15 4.97 1.98 44.99 0.09 5.06 16 7 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 8 C -0.11 -3.08 5.50 30.59 0.17 -2.92 16 9 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 10 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 11 C -0.13 -4.31 5.50 30.58 0.17 -4.14 16 12 C 0.17 6.28 2.29 44.97 0.10 6.38 16 13 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 14 N -0.73 -34.14 4.95 -323.00 -1.60 -35.74 16 15 C -0.23 -11.77 9.93 84.04 0.83 -10.93 16 16 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 17 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 18 N -0.97 -57.14 13.06 21.65 0.28 -56.85 16 19 Si 0.96 44.07 29.55 68.60 2.03 46.09 16 20 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C -0.14 -3.18 6.81 31.12 0.21 -2.97 16 24 C 0.24 5.72 3.26 31.12 0.10 5.82 16 25 F -0.19 -4.53 17.41 44.97 0.78 -3.75 16 26 F -0.19 -6.01 15.72 44.97 0.71 -5.30 16 27 C -0.13 -2.27 7.01 31.18 0.22 -2.05 16 28 H 0.10 1.48 7.95 -2.39 -0.02 1.46 16 29 H 0.06 1.51 7.00 -2.39 -0.02 1.49 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.41 11.72 7.49 -92.71 -0.69 11.03 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.37 19.55 7.80 -92.71 -0.72 18.83 16 41 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 42 H 0.08 2.30 7.43 -2.39 -0.02 2.28 16 43 H 0.15 2.32 8.10 -2.39 -0.02 2.30 16 44 H 0.16 1.65 7.96 -2.39 -0.02 1.63 16 45 H 0.10 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -67.54 364.46 3.49 -64.05 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.41 Total: 39.48 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 3.87 Total: -0.97 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -3.44 Total: -116.53 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.04 Total: -23.07 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 1.49 Total: -9.05 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.54 3.49 -64.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085390048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.695 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds