Wall clock time and date at job start Tue Mar 31 2020 10:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00387 * 2 1 4 4 H 1.48506 * 109.47180 * 240.00158 * 3 2 1 5 5 H 1.48496 * 109.47048 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47390 * 119.99928 * 3 2 1 7 7 C 1.38821 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99372 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99600 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85056 * 336.20110 * 10 9 7 12 12 C 1.53783 * 113.69002 * 107.46933 * 10 9 7 13 13 C 1.53777 * 87.07957 * 139.99003 * 12 10 9 14 14 H 1.09006 * 113.69119 * 89.12829 * 13 12 10 15 15 C 1.52999 * 113.61536 * 220.01678 * 13 12 10 16 16 N 1.46501 * 109.47123 * 272.50089 * 15 13 12 17 17 C 1.34776 * 120.00108 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99892 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00245 * 180.02562 * 17 16 15 20 20 H 1.09006 * 110.01859 * 31.44468 * 19 17 16 21 21 C 1.54264 * 110.03761 * 152.84075 * 19 17 16 22 22 C 1.54885 * 104.19847 * 142.88969 * 21 19 17 23 23 C 1.54890 * 102.75127 * 322.05934 * 22 21 19 24 24 C 1.53877 * 110.02957 * 270.05833 * 19 17 16 25 25 H 1.08998 * 110.03502 * 121.42798 * 24 19 17 26 26 C 1.52996 * 110.03174 * 359.97438 * 24 19 17 27 27 F 1.39904 * 109.47225 * 174.46349 * 26 24 19 28 28 F 1.39905 * 109.47437 * 294.46237 * 26 24 19 29 29 C 1.53777 * 87.08323 * 334.56830 * 13 12 10 30 30 H 0.97005 * 119.99466 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00349 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.61183 * 25.43772 * 12 10 9 33 33 H 1.08997 * 113.60949 * 254.53921 * 12 10 9 34 34 H 1.09000 * 109.47228 * 152.49831 * 15 13 12 35 35 H 1.09003 * 109.47004 * 32.49895 * 15 13 12 36 36 H 0.96996 * 120.00003 * 0.02562 * 16 15 13 37 37 H 1.09004 * 110.48579 * 261.57464 * 21 19 17 38 38 H 1.09005 * 110.48629 * 24.20852 * 21 19 17 39 39 H 1.09004 * 110.75374 * 80.37466 * 22 21 19 40 40 H 1.08997 * 110.75519 * 203.55838 * 22 21 19 41 41 H 1.09001 * 110.48660 * 156.61921 * 23 22 21 42 42 H 1.09002 * 110.48248 * 279.13404 * 23 22 21 43 43 H 1.09001 * 109.47108 * 54.46190 * 26 24 19 44 44 H 1.09000 * 113.61710 * 139.98162 * 29 13 12 45 45 H 1.09000 * 113.61412 * 270.80113 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0655 -3.5639 -0.4059 12 6 2.0008 -4.4033 1.3428 13 6 1.8494 -5.6981 0.5271 14 1 2.7993 -6.1645 0.2655 15 6 0.8475 -6.6868 1.1268 16 7 1.5302 -7.5451 2.0981 17 6 0.8411 -8.4978 2.7569 18 8 -0.3443 -8.6442 2.5461 19 6 1.5432 -9.3804 3.7565 20 1 2.3554 -8.8315 4.2333 21 6 0.5419 -9.8734 4.8214 22 6 0.9871 -11.3271 5.1174 23 6 1.4075 -11.8471 3.7203 24 6 2.0947 -10.6347 3.0561 25 1 3.1743 -10.6950 3.1938 26 6 1.7570 -10.5932 1.5645 27 9 2.3699 -11.6717 0.9174 28 9 0.3705 -10.6763 1.3977 29 6 1.2600 -4.8288 -0.5961 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 1.1230 -4.1590 1.9410 33 1 2.9294 -4.3512 1.9110 34 1 0.4242 -7.3018 0.3327 35 1 0.0491 -6.1373 1.6256 36 1 2.4780 -7.4274 2.2676 37 1 0.6107 -9.2625 5.7215 38 1 -0.4738 -9.8585 4.4259 39 1 1.8330 -11.3396 5.8048 40 1 0.1580 -11.9112 5.5167 41 1 2.1080 -12.6765 3.8168 42 1 0.5318 -12.1531 3.1478 43 1 2.1192 -9.6588 1.1358 44 1 1.5906 -5.1202 -1.5930 45 1 0.1795 -4.7020 -0.5287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086107133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:22 Heat of formation + Delta-G solvation = -122.853193 kcal Electronic energy + Delta-G solvation = -26997.671262 eV Core-core repulsion = 22878.913360 eV Total energy + Delta-G solvation = -4118.757902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.18007 -47.13373 -40.48781 -38.73994 -37.43146 -34.77282 -33.33664 -31.00550 -30.35472 -29.71781 -27.19526 -25.13173 -25.10572 -23.92005 -22.06915 -21.16291 -21.08255 -19.83351 -19.03289 -18.01719 -17.59176 -17.46053 -17.05460 -16.35987 -15.90812 -15.71394 -15.12965 -14.90129 -14.66592 -14.42772 -14.04796 -13.87281 -13.54777 -13.52477 -13.19430 -13.07485 -12.95318 -12.72712 -12.10751 -11.92418 -11.85278 -11.71516 -11.48890 -11.42024 -11.31064 -11.25694 -11.01537 -10.93266 -10.84345 -10.56235 -10.27966 -10.18737 -9.86018 -9.83829 -9.50753 -9.09830 -8.88839 -6.98964 -5.80277 -3.09361 2.41269 2.96857 3.41195 3.41575 3.45913 3.47181 3.81875 3.85967 3.99681 4.38597 4.56202 4.58084 4.64484 4.77962 4.90943 4.94605 4.96657 4.99490 5.04003 5.16398 5.19492 5.25609 5.43884 5.45798 5.49549 5.63087 5.66296 5.76623 5.78218 5.81925 5.89875 6.02112 6.06312 6.20512 6.27698 6.32218 6.39716 6.55448 6.78860 7.07714 7.34422 7.66171 8.07831 8.38239 9.49175 10.07353 10.41458 11.42016 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028146 B = 0.002361 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.570033 B =11858.848381 C =12213.958717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.087 0.913 15 C 0.130 3.870 16 N -0.730 5.730 17 C 0.501 3.499 18 O -0.515 6.515 19 C -0.107 4.107 20 H 0.102 0.898 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.130 4.130 25 H 0.110 0.890 26 C 0.254 3.746 27 F -0.206 7.206 28 F -0.185 7.185 29 C -0.143 4.143 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -25.150 8.548 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.007 3.993 16 N -0.383 5.383 17 C 0.286 3.714 18 O -0.390 6.390 19 C -0.129 4.129 20 H 0.120 0.880 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.150 4.150 25 H 0.128 0.872 26 C 0.200 3.800 27 F -0.187 7.187 28 F -0.166 7.166 29 C -0.182 4.182 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.679 -25.064 8.334 27.017 hybrid contribution 0.677 0.994 0.007 1.202 sum 6.356 -24.070 8.341 26.255 Atomic orbital electron populations 1.69650 1.05153 1.25905 1.57284 1.24776 0.95523 0.97807 1.02775 0.86264 0.78541 0.83497 0.77846 1.21220 1.21663 1.21244 1.19254 0.91018 0.84254 1.43171 0.91161 1.42408 1.05770 0.99874 1.86996 1.21512 0.95299 0.85061 0.92746 0.90696 1.23949 1.01332 0.94910 0.99976 1.22643 0.98310 0.94438 0.99293 0.89435 1.21473 0.95371 0.91589 0.90835 1.46247 1.13242 1.35475 1.43293 1.20502 0.87909 0.81041 0.81989 1.90742 1.15041 1.68961 1.64232 1.21967 0.99895 0.94828 0.96171 0.87993 1.22395 0.99946 0.95806 0.96954 1.22457 1.01212 0.95812 0.96259 1.22427 1.00872 0.95866 0.96602 1.22899 1.02957 0.96648 0.92489 0.87161 1.22072 0.75813 0.88866 0.93202 1.92980 1.82846 1.59477 1.83422 1.93084 1.30441 1.96829 1.96260 1.23452 1.01077 0.97019 0.96696 0.93361 0.78050 0.90344 0.92796 0.91724 0.91071 0.76638 0.90833 0.89030 0.91165 0.90750 0.90635 0.90211 0.87559 0.91999 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.74 9.97 -15.05 -0.15 -6.89 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -17.59 5.40 -52.63 -0.28 -17.88 16 10 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.16 -2.54 7.43 -25.92 -0.19 -2.73 16 13 C -0.13 -1.60 3.75 -89.81 -0.34 -1.94 16 14 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 15 C 0.13 1.61 5.51 -4.04 -0.02 1.58 16 16 N -0.73 -7.23 4.76 -60.29 -0.29 -7.52 16 17 C 0.50 5.59 4.56 -10.99 -0.05 5.54 16 18 O -0.52 -7.94 13.95 5.55 0.08 -7.87 16 19 C -0.11 -0.82 3.28 -90.66 -0.30 -1.12 16 20 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 21 C -0.11 -0.91 6.31 -25.08 -0.16 -1.07 16 22 C -0.12 -0.75 6.91 -24.74 -0.17 -0.92 16 23 C -0.12 -0.86 6.20 -25.01 -0.16 -1.01 16 24 C -0.13 -0.92 3.13 -89.44 -0.28 -1.20 16 25 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 26 C 0.25 2.42 4.10 37.16 0.15 2.57 16 27 F -0.21 -2.14 17.26 2.25 0.04 -2.10 16 28 F -0.18 -2.42 13.66 2.25 0.03 -2.39 16 29 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.39 10.17 7.93 -40.82 -0.32 9.85 16 32 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 36 H 0.40 2.84 8.47 -40.82 -0.35 2.49 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.98 6.83 -51.93 -0.35 0.63 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.72 7.05 -51.93 -0.37 0.35 16 43 H 0.11 0.90 6.60 -51.93 -0.34 0.56 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -32.72 363.85 -8.65 -41.37 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.16 Total: 8.31 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.25 Total: -7.22 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.15 Total: -52.73 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.87 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.07 Total: -4.49 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.72 -8.65 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086107133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.484 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds