Wall clock time and date at job start Tue Mar 31 2020 10:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00387 * 2 1 4 4 H 1.48506 * 109.47180 * 240.00158 * 3 2 1 5 5 H 1.48496 * 109.47048 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47390 * 119.99928 * 3 2 1 7 7 C 1.38821 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99372 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99600 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85056 * 336.20110 * 10 9 7 12 12 C 1.53783 * 113.69002 * 107.46933 * 10 9 7 13 13 C 1.53777 * 87.07957 * 139.99003 * 12 10 9 14 14 H 1.09006 * 113.69119 * 89.12829 * 13 12 10 15 15 C 1.52999 * 113.61536 * 220.01678 * 13 12 10 16 16 N 1.46501 * 109.47123 * 272.50089 * 15 13 12 17 17 C 1.34776 * 120.00108 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99892 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00245 * 180.02562 * 17 16 15 20 20 H 1.09006 * 110.01859 * 31.44468 * 19 17 16 21 21 C 1.54264 * 110.03761 * 152.84075 * 19 17 16 22 22 C 1.54885 * 104.19847 * 142.88969 * 21 19 17 23 23 C 1.54890 * 102.75127 * 322.05934 * 22 21 19 24 24 C 1.53877 * 110.02957 * 270.05833 * 19 17 16 25 25 H 1.08998 * 110.03502 * 121.42798 * 24 19 17 26 26 C 1.52996 * 110.03174 * 359.97438 * 24 19 17 27 27 F 1.39904 * 109.47225 * 174.46349 * 26 24 19 28 28 F 1.39905 * 109.47437 * 294.46237 * 26 24 19 29 29 C 1.53777 * 87.08323 * 334.56830 * 13 12 10 30 30 H 0.97005 * 119.99466 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00349 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.61183 * 25.43772 * 12 10 9 33 33 H 1.08997 * 113.60949 * 254.53921 * 12 10 9 34 34 H 1.09000 * 109.47228 * 152.49831 * 15 13 12 35 35 H 1.09003 * 109.47004 * 32.49895 * 15 13 12 36 36 H 0.96996 * 120.00003 * 0.02562 * 16 15 13 37 37 H 1.09004 * 110.48579 * 261.57464 * 21 19 17 38 38 H 1.09005 * 110.48629 * 24.20852 * 21 19 17 39 39 H 1.09004 * 110.75374 * 80.37466 * 22 21 19 40 40 H 1.08997 * 110.75519 * 203.55838 * 22 21 19 41 41 H 1.09001 * 110.48660 * 156.61921 * 23 22 21 42 42 H 1.09002 * 110.48248 * 279.13404 * 23 22 21 43 43 H 1.09001 * 109.47108 * 54.46190 * 26 24 19 44 44 H 1.09000 * 113.61710 * 139.98162 * 29 13 12 45 45 H 1.09000 * 113.61412 * 270.80113 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0655 -3.5639 -0.4059 12 6 2.0008 -4.4033 1.3428 13 6 1.8494 -5.6981 0.5271 14 1 2.7993 -6.1645 0.2655 15 6 0.8475 -6.6868 1.1268 16 7 1.5302 -7.5451 2.0981 17 6 0.8411 -8.4978 2.7569 18 8 -0.3443 -8.6442 2.5461 19 6 1.5432 -9.3804 3.7565 20 1 2.3554 -8.8315 4.2333 21 6 0.5419 -9.8734 4.8214 22 6 0.9871 -11.3271 5.1174 23 6 1.4075 -11.8471 3.7203 24 6 2.0947 -10.6347 3.0561 25 1 3.1743 -10.6950 3.1938 26 6 1.7570 -10.5932 1.5645 27 9 2.3699 -11.6717 0.9174 28 9 0.3705 -10.6763 1.3977 29 6 1.2600 -4.8288 -0.5961 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 1.1230 -4.1590 1.9410 33 1 2.9294 -4.3512 1.9110 34 1 0.4242 -7.3018 0.3327 35 1 0.0491 -6.1373 1.6256 36 1 2.4780 -7.4274 2.2676 37 1 0.6107 -9.2625 5.7215 38 1 -0.4738 -9.8585 4.4259 39 1 1.8330 -11.3396 5.8048 40 1 0.1580 -11.9112 5.5167 41 1 2.1080 -12.6765 3.8168 42 1 0.5318 -12.1531 3.1478 43 1 2.1192 -9.6588 1.1358 44 1 1.5906 -5.1202 -1.5930 45 1 0.1795 -4.7020 -0.5287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086107133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:22 Heat of formation + Delta-G solvation = -143.931931 kcal Electronic energy + Delta-G solvation = -26998.585305 eV Core-core repulsion = 22878.913360 eV Total energy + Delta-G solvation = -4119.671945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.97619 -47.95672 -41.33533 -39.98193 -38.19136 -36.04853 -35.02428 -32.29253 -31.45771 -30.53746 -28.35616 -26.45367 -25.95361 -25.62285 -23.04080 -22.27526 -21.71792 -20.85774 -20.19404 -19.07148 -18.72562 -18.34384 -18.24650 -17.27405 -16.90560 -16.49891 -16.37586 -16.17949 -15.72430 -15.52350 -15.23720 -14.91737 -14.83502 -14.50925 -14.45289 -14.12308 -13.76899 -13.43006 -13.40536 -13.23631 -13.03053 -12.90985 -12.68640 -12.60265 -12.32537 -12.23416 -12.08569 -12.00964 -11.87605 -11.64877 -11.56432 -11.52899 -11.51603 -11.08434 -10.83189 -10.70122 -10.06400 -8.97633 -7.94294 -5.22741 1.47341 1.50387 1.56507 1.56612 2.13831 2.57090 2.75440 3.21044 3.22536 3.37459 3.41504 3.65950 3.75140 3.76238 3.87003 3.97711 4.04448 4.24224 4.26149 4.36028 4.40247 4.43858 4.45367 4.49787 4.57086 4.58246 4.72589 4.77278 4.97646 4.98859 4.99489 5.05890 5.13140 5.17369 5.19350 5.23580 5.36375 5.42285 5.48328 5.53675 5.74210 6.27878 6.56810 7.27209 7.33213 8.11970 8.33371 9.29175 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028146 B = 0.002361 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.570033 B =11858.848381 C =12213.958717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.143 3.857 11 H 0.082 0.918 12 C -0.151 4.151 13 C -0.093 4.093 14 H 0.126 0.874 15 C 0.138 3.862 16 N -0.717 5.717 17 C 0.497 3.503 18 O -0.565 6.565 19 C -0.100 4.100 20 H 0.140 0.860 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.149 0.851 26 C 0.243 3.757 27 F -0.212 7.212 28 F -0.211 7.211 29 C -0.140 4.140 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.418 0.582 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 -26.491 9.588 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 H 0.100 0.900 12 C -0.192 4.192 13 C -0.112 4.112 14 H 0.144 0.856 15 C 0.014 3.986 16 N -0.371 5.371 17 C 0.284 3.716 18 O -0.443 6.443 19 C -0.122 4.122 20 H 0.158 0.842 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.161 4.161 24 C -0.142 4.142 25 H 0.166 0.834 26 C 0.189 3.811 27 F -0.193 7.193 28 F -0.193 7.193 29 C -0.180 4.180 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.256 0.744 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.096 0.904 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.244 -26.458 9.383 29.555 hybrid contribution -0.408 1.322 -0.342 1.425 sum 8.836 -25.136 9.041 28.136 Atomic orbital electron populations 1.69823 1.06778 1.26083 1.59736 1.25615 0.96354 1.01317 1.03968 0.85205 0.77151 0.79101 0.78279 1.20239 1.22529 1.20249 1.19709 0.91618 0.85358 1.40754 0.90197 1.42647 1.05335 1.01311 1.87550 1.21973 0.95607 0.83766 0.95340 0.90003 1.23703 1.01119 0.95958 0.98429 1.22473 0.99455 0.92959 0.96349 0.85641 1.21182 0.94864 0.91542 0.91036 1.46082 1.14024 1.34580 1.42396 1.21188 0.87446 0.81004 0.81990 1.90733 1.17490 1.70310 1.65757 1.22066 1.00383 0.94686 0.95025 0.84166 1.22399 0.98272 0.97557 0.97413 1.22447 1.02053 0.94207 0.96198 1.22450 1.00297 0.96674 0.96712 1.22997 1.04996 0.95966 0.90227 0.83358 1.22501 0.74399 0.89056 0.95104 1.92963 1.82743 1.59865 1.83757 1.93038 1.32775 1.96936 1.96525 1.23346 0.99814 0.96203 0.98596 0.94125 0.79753 0.92822 0.91018 0.92179 0.93821 0.74443 0.89633 0.92664 0.88587 0.90960 0.88829 0.93024 0.86414 0.90421 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.27 13.06 21.65 0.28 -59.98 16 2 C -0.08 -4.64 5.50 84.87 0.47 -4.17 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.31 9.97 84.04 0.84 -12.47 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.73 -36.55 5.40 -320.44 -1.73 -38.29 16 10 C 0.14 5.23 4.48 45.52 0.20 5.43 16 11 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 12 C -0.15 -4.55 7.43 31.12 0.23 -4.32 16 13 C -0.09 -2.10 3.75 -10.27 -0.04 -2.14 16 14 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 15 C 0.14 3.24 5.51 86.38 0.48 3.72 16 16 N -0.72 -12.50 4.76 -463.05 -2.20 -14.70 16 17 C 0.50 10.47 4.56 87.66 0.40 10.87 16 18 O -0.56 -17.88 13.95 -3.05 -0.04 -17.93 16 19 C -0.10 -1.26 3.28 -10.82 -0.04 -1.30 16 20 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 21 C -0.12 -1.74 6.31 31.67 0.20 -1.54 16 22 C -0.11 -1.14 6.91 31.88 0.22 -0.92 16 23 C -0.12 -1.52 6.20 31.71 0.20 -1.32 16 24 C -0.12 -1.35 3.13 -10.03 -0.03 -1.38 16 25 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 26 C 0.24 4.21 4.10 71.98 0.30 4.51 16 27 F -0.21 -4.05 17.26 44.97 0.78 -3.27 16 28 F -0.21 -5.62 13.66 44.97 0.61 -5.00 16 29 C -0.14 -4.18 7.39 31.12 0.23 -3.95 16 30 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 31 H 0.37 20.31 7.93 -92.71 -0.73 19.57 16 32 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 36 H 0.42 4.17 8.47 -92.71 -0.79 3.38 16 37 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.05 1.23 6.83 -2.38 -0.02 1.22 16 39 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 0.93 7.05 -2.39 -0.02 0.91 16 43 H 0.12 1.70 6.60 -2.39 -0.02 1.68 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 Total: -1.00 -75.16 363.85 2.86 -72.30 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -0.51 Total: 27.96 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 3.65 Total: -8.98 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -3.65 Total: -112.97 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.04 Total: -17.93 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 1.39 Total: -8.27 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -75.16 2.86 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086107133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.631 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds