Wall clock time and date at job start Tue Mar 31 2020 10:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48503 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47223 * 300.00113 * 3 2 1 6 6 H 1.48509 * 109.47046 * 60.00047 * 3 2 1 7 7 C 1.38808 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00271 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99857 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85280 * 336.18887 * 10 9 7 12 12 C 1.53778 * 113.61780 * 107.50355 * 10 9 7 13 13 C 1.53778 * 87.08449 * 139.97851 * 12 10 9 14 14 H 1.09000 * 113.61263 * 89.11673 * 13 12 10 15 15 C 1.52997 * 113.61422 * 220.01977 * 13 12 10 16 16 N 1.46499 * 109.47084 * 272.49417 * 15 13 12 17 17 C 1.34774 * 120.00234 * 179.97438 * 16 15 13 18 18 O 1.21280 * 120.00101 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00231 * 179.97438 * 17 16 15 20 20 H 1.09007 * 109.46801 * 60.00608 * 19 17 16 21 21 C 1.53001 * 109.47420 * 180.02562 * 19 17 16 22 22 C 1.52995 * 109.47288 * 180.02562 * 21 19 17 23 23 C 1.53002 * 109.47063 * 300.00086 * 22 21 19 24 24 C 1.53001 * 109.47139 * 59.99822 * 23 22 21 25 25 C 1.52993 * 109.47469 * 300.00806 * 19 17 16 26 26 F 1.39901 * 109.47076 * 299.99576 * 25 19 17 27 27 F 1.39901 * 109.47208 * 59.99709 * 25 19 17 28 28 C 1.53784 * 87.08081 * 334.56700 * 13 12 10 29 29 H 0.96998 * 120.00390 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00234 * 359.97438 * 9 7 2 31 31 H 1.08999 * 113.61111 * 254.52914 * 12 10 9 32 32 H 1.09004 * 113.61682 * 25.42310 * 12 10 9 33 33 H 1.09004 * 109.47170 * 32.49387 * 15 13 12 34 34 H 1.08995 * 109.47328 * 152.49879 * 15 13 12 35 35 H 0.97005 * 119.99932 * 0.02562 * 16 15 13 36 36 H 1.09007 * 109.46736 * 300.00789 * 21 19 17 37 37 H 1.08998 * 109.46848 * 60.00198 * 21 19 17 38 38 H 1.08998 * 109.47400 * 60.00064 * 22 21 19 39 39 H 1.09004 * 109.47241 * 180.02562 * 22 21 19 40 40 H 1.08996 * 109.46829 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.46994 * 300.00226 * 23 22 21 42 42 H 1.08998 * 109.46848 * 60.00314 * 24 23 22 43 43 H 1.08997 * 109.46584 * 179.97438 * 24 23 22 44 44 H 1.09004 * 113.61451 * 270.88641 * 28 13 12 45 45 H 1.08994 * 113.61477 * 139.97943 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0657 -3.5638 -0.4050 12 6 1.9993 -4.4022 1.3443 13 6 1.8482 -5.6976 0.5295 14 1 2.7988 -6.1634 0.2698 15 6 0.8452 -6.6852 1.1290 16 7 1.5264 -7.5432 2.1016 17 6 0.8362 -8.4950 2.7605 18 8 -0.3488 -8.6415 2.5479 19 6 1.5372 -9.3780 3.7606 20 1 1.9607 -8.7627 4.5545 21 6 0.5342 -10.3656 4.3602 22 6 1.2456 -11.2616 5.3759 23 6 2.3666 -12.0340 4.6776 24 6 3.3696 -11.0464 4.0779 25 6 2.6575 -10.1508 3.0617 26 9 2.1139 -10.9405 2.0428 27 9 3.5747 -9.2481 2.5130 28 6 1.2603 -4.8288 -0.5950 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.9274 -4.3501 1.9135 32 1 1.1210 -4.1570 1.9416 33 1 0.0465 -6.1349 1.6266 34 1 0.4224 -7.3007 0.3350 35 1 2.4742 -7.4258 2.2719 36 1 -0.2643 -9.8152 4.8580 37 1 0.1110 -10.9808 3.5661 38 1 1.6685 -10.6461 6.1700 39 1 0.5312 -11.9655 5.8028 40 1 2.8732 -12.6726 5.4011 41 1 1.9437 -12.6494 3.8835 42 1 3.7925 -10.4310 4.8719 43 1 4.1684 -11.5968 3.5808 44 1 0.1799 -4.7002 -0.5280 45 1 1.5918 -5.1211 -1.5913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086159022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:09 Heat of formation + Delta-G solvation = -128.184822 kcal Electronic energy + Delta-G solvation = -26992.241514 eV Core-core repulsion = 22873.252415 eV Total energy + Delta-G solvation = -4118.989099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.42819 -47.37837 -40.10239 -38.61906 -37.55786 -34.71451 -33.30289 -31.91025 -30.63463 -30.13257 -27.39290 -25.07537 -24.36530 -23.53581 -23.23953 -21.07593 -20.93087 -20.33907 -19.07954 -17.96280 -17.58784 -17.04137 -17.01951 -16.46635 -16.18293 -15.22543 -14.98659 -14.73057 -14.59624 -14.42983 -14.35625 -13.84583 -13.66968 -13.59301 -13.42215 -13.33570 -13.00121 -12.91403 -12.58830 -12.16747 -11.88572 -11.82819 -11.79003 -11.38020 -11.36307 -11.22929 -11.18105 -10.85240 -10.79018 -10.51146 -10.24409 -10.10779 -9.85109 -9.81745 -9.47698 -9.03919 -8.86832 -6.95776 -5.78056 -3.06835 2.33392 2.95728 3.30099 3.42483 3.48012 3.50422 3.61712 3.74527 3.93915 4.38716 4.46356 4.48671 4.58557 4.66743 4.70588 4.80531 4.99608 5.02719 5.08575 5.14380 5.25426 5.28889 5.42529 5.47376 5.49310 5.53628 5.59400 5.70684 5.83872 5.85287 5.88907 5.94707 6.10139 6.26076 6.32678 6.37396 6.45224 6.60486 6.84297 7.12589 7.40208 7.69844 8.07230 8.40534 9.51596 10.10081 10.44378 11.44441 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.002332 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.428708 B =12002.128795 C =12135.040464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.719 5.719 17 C 0.512 3.488 18 O -0.530 6.530 19 C -0.149 4.149 20 H 0.125 0.875 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.299 3.701 26 F -0.191 7.191 27 F -0.196 7.196 28 C -0.142 4.142 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.403 0.597 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -26.673 10.985 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.371 5.371 17 C 0.297 3.703 18 O -0.407 6.407 19 C -0.172 4.172 20 H 0.143 0.857 21 C -0.138 4.138 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.194 4.194 25 C 0.262 3.738 26 F -0.172 7.172 27 F -0.177 7.177 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.240 0.760 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.064 -26.561 10.748 29.288 hybrid contribution 0.707 1.087 -0.073 1.299 sum 6.771 -25.474 10.675 28.438 Atomic orbital electron populations 1.69669 1.05138 1.25623 1.57600 1.24773 0.95531 0.97803 1.02916 0.86118 0.78781 0.84105 0.77188 1.20538 1.21847 1.21869 1.19352 0.91095 0.84236 1.42699 0.91047 1.42427 1.05773 0.99898 1.86988 1.21519 0.95327 0.85019 0.92748 0.90639 1.23948 1.01335 0.94935 0.99968 1.22645 0.98444 0.94365 0.99246 0.89315 1.21475 0.95331 0.91534 0.90831 1.46217 1.13676 1.34857 1.42379 1.20118 0.87565 0.80979 0.81687 1.90717 1.15174 1.69826 1.64943 1.22471 0.97141 0.98374 0.99175 0.85703 1.21384 0.96681 0.96493 0.99272 1.21659 0.97801 0.98834 0.97947 1.21567 0.96038 0.97560 1.00805 1.22549 0.99567 0.98826 0.98480 1.20926 0.85594 0.83530 0.83730 1.93038 1.86534 1.74921 1.62657 1.92982 1.68295 1.68784 1.87638 1.23449 1.01024 0.96978 0.96720 0.93503 0.78071 0.92767 0.90354 0.91063 0.91686 0.76027 0.89548 0.90027 0.91214 0.90468 0.90218 0.90680 0.88402 0.89005 0.90096 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.95 5.40 -52.63 -0.28 -18.23 16 10 C 0.17 3.26 4.48 -67.12 -0.30 2.96 16 11 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 12 C -0.16 -2.71 7.43 -25.92 -0.19 -2.90 16 13 C -0.13 -1.80 3.75 -89.81 -0.34 -2.14 16 14 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 15 C 0.13 1.84 5.51 -4.04 -0.02 1.81 16 16 N -0.72 -8.94 5.24 -60.30 -0.32 -9.26 16 17 C 0.51 6.65 6.89 -10.99 -0.08 6.57 16 18 O -0.53 -8.79 15.98 5.56 0.09 -8.70 16 19 C -0.15 -1.32 2.23 -91.77 -0.20 -1.53 16 20 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 21 C -0.10 -0.80 4.37 -26.73 -0.12 -0.92 16 22 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 23 C -0.12 -0.58 5.80 -26.73 -0.16 -0.73 16 24 C -0.16 -0.84 5.46 -26.71 -0.15 -0.99 16 25 C 0.30 2.58 1.63 -26.71 -0.04 2.53 16 26 F -0.19 -2.13 15.73 2.25 0.04 -2.10 16 27 F -0.20 -1.88 14.84 2.25 0.03 -1.85 16 28 C -0.14 -2.32 7.39 -25.91 -0.19 -2.52 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.39 10.33 7.92 -40.82 -0.32 10.00 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 33 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 4.34 6.65 -40.82 -0.27 4.07 16 36 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.08 0.78 7.76 -51.93 -0.40 0.38 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.42 7.80 -51.93 -0.41 0.02 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -32.84 365.17 -8.68 -41.53 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.25 Total: 9.36 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.19 Total: -6.03 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.12 Total: -55.10 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.84 -8.68 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086159022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.657 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds