Wall clock time and date at job start Tue Mar 31 2020 10:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00221 * 2 1 4 4 H 1.48503 * 109.47074 * 239.99740 * 3 2 1 5 5 H 1.48501 * 109.46876 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47172 * 119.99354 * 3 2 1 7 7 C 1.38815 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99863 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.90662 * 23.75067 * 10 9 7 12 12 C 1.53775 * 113.61619 * 155.00395 * 10 9 7 13 13 C 1.53782 * 87.08215 * 89.11225 * 12 10 9 14 14 H 1.09001 * 113.61890 * 270.79773 * 13 12 10 15 15 C 1.53004 * 113.61346 * 139.98202 * 13 12 10 16 16 N 1.46494 * 109.47216 * 176.53330 * 15 13 12 17 17 C 1.34784 * 119.99987 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99990 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.02001 * 300.06766 * 19 17 16 21 21 C 1.54266 * 110.03029 * 61.45648 * 19 17 16 22 22 C 1.54887 * 104.19888 * 95.67207 * 21 19 17 23 23 C 1.54893 * 102.74533 * 37.94403 * 22 21 19 24 24 C 1.53872 * 110.03383 * 178.62020 * 19 17 16 25 25 H 1.09002 * 110.03208 * 0.02562 * 24 19 17 26 26 C 1.53000 * 110.03213 * 121.38029 * 24 19 17 27 27 F 1.39896 * 109.47262 * 300.00538 * 26 24 19 28 28 F 1.39906 * 109.46575 * 60.00407 * 26 24 19 29 29 C 1.53776 * 87.17203 * 25.39311 * 13 12 10 30 30 H 0.97008 * 119.99946 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00513 * 0.02562 * 9 7 2 32 32 H 1.09001 * 113.61414 * 334.56854 * 12 10 9 33 33 H 1.08998 * 113.61969 * 203.66536 * 12 10 9 34 34 H 1.08999 * 109.47016 * 56.52685 * 15 13 12 35 35 H 1.09004 * 109.46764 * 296.53402 * 15 13 12 36 36 H 0.96995 * 120.00191 * 359.97438 * 16 15 13 37 37 H 1.09001 * 110.48620 * 214.35415 * 21 19 17 38 38 H 1.09004 * 110.48798 * 336.99248 * 21 19 17 39 39 H 1.09001 * 110.75744 * 156.25305 * 22 21 19 40 40 H 1.09000 * 110.75698 * 279.63123 * 22 21 19 41 41 H 1.09002 * 110.48578 * 203.38190 * 23 22 21 42 42 H 1.08998 * 110.60430 * 80.79077 * 23 22 21 43 43 H 1.09000 * 109.47095 * 180.02562 * 26 24 19 44 44 H 1.09004 * 113.61767 * 89.15664 * 29 13 12 45 45 H 1.09002 * 113.61698 * 220.06042 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 3.0660 -3.5644 0.4070 12 6 1.2601 -4.8282 0.5991 13 6 0.7204 -5.0797 -0.8187 14 1 -0.1911 -4.5260 -1.0436 15 6 0.6195 -6.5626 -1.1820 16 7 0.0211 -6.6999 -2.5121 17 6 -0.1668 -7.9242 -3.0435 18 8 0.1592 -8.9122 -2.4202 19 6 -0.7829 -8.0654 -4.4115 20 1 -1.7802 -7.6254 -4.4188 21 6 0.1070 -7.3751 -5.4656 22 6 0.9783 -8.5213 -6.0367 23 6 -0.0115 -9.7117 -6.0843 24 6 -0.8583 -9.5511 -4.8048 25 1 -0.4495 -10.1700 -4.0061 26 6 -2.3099 -9.9468 -5.0826 27 9 -3.0789 -9.7358 -3.9332 28 9 -2.8132 -9.1677 -6.1300 29 6 1.9977 -4.4027 -1.3428 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0016 32 1 0.4937 -4.5178 1.3093 33 1 1.8868 -5.6358 0.9774 34 1 -0.0033 -7.0748 -0.4487 35 1 1.6159 -7.0046 -1.1845 36 1 -0.2400 -5.9097 -3.0104 37 1 -0.5055 -6.9335 -6.2517 38 1 0.7340 -6.6161 -4.9976 39 1 1.3340 -8.2745 -7.0370 40 1 1.8136 -8.7398 -5.3714 41 1 0.5290 -10.6582 -6.0677 42 1 -0.6435 -9.6499 -6.9702 43 1 -2.3527 -11.0001 -5.3597 44 1 2.8267 -5.0936 -1.4965 45 1 1.8261 -3.7491 -2.1980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086386937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:40 Heat of formation + Delta-G solvation = -129.568535 kcal Electronic energy + Delta-G solvation = -26715.910018 eV Core-core repulsion = 22596.860917 eV Total energy + Delta-G solvation = -4119.049101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.22982 -47.18750 -40.39588 -38.73576 -37.36157 -34.71495 -33.23748 -30.77424 -30.41542 -29.65465 -27.08178 -25.19802 -25.07219 -23.73816 -22.14562 -21.59709 -20.93613 -19.75393 -18.55161 -18.11324 -17.34613 -17.32156 -17.05055 -16.59620 -16.09382 -15.43831 -15.12857 -14.87021 -14.53493 -14.15070 -14.05549 -14.00346 -13.59615 -13.51794 -13.18133 -13.17256 -12.91967 -12.79994 -12.31301 -11.95454 -11.82584 -11.58256 -11.49136 -11.38846 -11.25405 -11.16131 -11.06358 -10.92524 -10.84595 -10.50453 -10.22584 -10.10617 -9.75535 -9.71053 -9.47427 -9.01585 -8.89794 -7.02633 -5.82783 -3.12000 2.56388 3.09067 3.40850 3.45442 3.46353 3.48859 3.82478 3.93837 4.13519 4.48897 4.53786 4.59872 4.65439 4.79350 5.00143 5.03766 5.04521 5.11968 5.16784 5.22973 5.30089 5.36654 5.43140 5.46373 5.60524 5.62753 5.68221 5.73074 5.81263 5.85302 5.92850 5.96323 6.09225 6.18801 6.35115 6.41053 6.57037 6.71876 6.87767 7.01939 7.47918 7.66304 8.16302 8.36334 9.46940 10.04392 10.38626 11.39560 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.002415 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.954018 B =11590.821813 C =11789.281984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.721 5.721 17 C 0.521 3.479 18 O -0.545 6.545 19 C -0.111 4.111 20 H 0.104 0.896 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.138 4.138 25 H 0.127 0.873 26 C 0.266 3.734 27 F -0.203 7.203 28 F -0.205 7.205 29 C -0.168 4.168 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.403 0.597 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -21.402 -13.030 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.371 5.371 17 C 0.306 3.694 18 O -0.423 6.423 19 C -0.133 4.133 20 H 0.122 0.878 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.157 4.157 25 H 0.145 0.855 26 C 0.212 3.788 27 F -0.184 7.184 28 F -0.186 7.186 29 C -0.209 4.209 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.237 0.763 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.479 -21.885 -12.532 25.263 hybrid contribution -0.281 1.390 -0.221 1.435 sum -1.760 -20.495 -12.753 24.203 Atomic orbital electron populations 1.69649 1.05146 1.25936 1.57335 1.24765 0.95539 0.97796 1.02732 0.86244 0.78525 0.83369 0.77902 1.21211 1.21666 1.21180 1.19243 0.91085 0.83980 1.43160 0.91050 1.42166 1.05682 0.99431 1.87142 1.21085 0.95086 0.85588 0.92707 0.91971 1.23440 1.00502 0.99689 0.95132 1.22711 0.99581 0.92921 0.98636 0.88907 1.21487 0.97959 0.97054 0.82720 1.46021 1.63293 1.08029 1.19788 1.20323 0.78240 0.83306 0.87488 1.90646 1.51537 1.37498 1.62582 1.21884 1.01611 0.96375 0.93393 0.87831 1.22416 0.97615 0.98001 0.97359 1.22470 0.97723 0.94192 1.01501 1.22375 0.97503 0.99656 0.95929 1.23009 0.93185 0.97765 1.01787 0.85517 1.21938 0.88180 0.95394 0.73303 1.93005 1.77738 1.96375 1.51322 1.92972 1.89021 1.78255 1.58372 1.23915 0.95650 0.99612 1.01773 0.93360 0.78102 0.91311 0.90478 0.91853 0.91599 0.76250 0.90030 0.90450 0.90664 0.91000 0.90562 0.90481 0.87105 0.91460 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.22 5.31 -52.55 -0.28 -17.49 16 10 C 0.17 3.22 4.57 -67.02 -0.31 2.92 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 12 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 13 C -0.12 -1.76 3.62 -89.81 -0.33 -2.09 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 15 C 0.13 1.74 5.50 -4.04 -0.02 1.72 16 16 N -0.72 -8.67 5.23 -60.29 -0.32 -8.99 16 17 C 0.52 6.56 7.09 -10.98 -0.08 6.49 16 18 O -0.54 -8.58 15.21 5.56 0.08 -8.49 16 19 C -0.11 -1.08 2.58 -90.66 -0.23 -1.31 16 20 H 0.10 1.01 7.32 -51.93 -0.38 0.63 16 21 C -0.12 -0.93 6.31 -25.07 -0.16 -1.09 16 22 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 23 C -0.12 -0.77 6.29 -25.07 -0.16 -0.93 16 24 C -0.14 -1.19 2.75 -89.50 -0.25 -1.43 16 25 H 0.13 1.29 6.39 -51.93 -0.33 0.95 16 26 C 0.27 2.17 4.73 37.16 0.18 2.34 16 27 F -0.20 -2.27 16.91 2.25 0.04 -2.23 16 28 F -0.20 -1.89 16.09 2.25 0.04 -1.86 16 29 C -0.17 -2.74 7.44 -25.83 -0.19 -2.93 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.38 9.94 7.90 -40.82 -0.32 9.62 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 36 H 0.40 4.26 8.25 -40.82 -0.34 3.93 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.65 7.40 -51.93 -0.38 0.26 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.46 7.25 -51.93 -0.38 0.08 16 43 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -31.64 369.26 -8.47 -40.10 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.14 Total: 10.47 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.15 Total: -7.14 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.13 Total: -53.43 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.07 Total: -4.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.64 -8.47 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086386937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.466 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds