Wall clock time and date at job start Tue Mar 31 2020 10:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00221 * 2 1 4 4 H 1.48503 * 109.47074 * 239.99740 * 3 2 1 5 5 H 1.48501 * 109.46876 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47172 * 119.99354 * 3 2 1 7 7 C 1.38815 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99863 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.90662 * 23.75067 * 10 9 7 12 12 C 1.53775 * 113.61619 * 155.00395 * 10 9 7 13 13 C 1.53782 * 87.08215 * 89.11225 * 12 10 9 14 14 H 1.09001 * 113.61890 * 270.79773 * 13 12 10 15 15 C 1.53004 * 113.61346 * 139.98202 * 13 12 10 16 16 N 1.46494 * 109.47216 * 176.53330 * 15 13 12 17 17 C 1.34784 * 119.99987 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99990 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.02001 * 300.06766 * 19 17 16 21 21 C 1.54266 * 110.03029 * 61.45648 * 19 17 16 22 22 C 1.54887 * 104.19888 * 95.67207 * 21 19 17 23 23 C 1.54893 * 102.74533 * 37.94403 * 22 21 19 24 24 C 1.53872 * 110.03383 * 178.62020 * 19 17 16 25 25 H 1.09002 * 110.03208 * 0.02562 * 24 19 17 26 26 C 1.53000 * 110.03213 * 121.38029 * 24 19 17 27 27 F 1.39896 * 109.47262 * 300.00538 * 26 24 19 28 28 F 1.39906 * 109.46575 * 60.00407 * 26 24 19 29 29 C 1.53776 * 87.17203 * 25.39311 * 13 12 10 30 30 H 0.97008 * 119.99946 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00513 * 0.02562 * 9 7 2 32 32 H 1.09001 * 113.61414 * 334.56854 * 12 10 9 33 33 H 1.08998 * 113.61969 * 203.66536 * 12 10 9 34 34 H 1.08999 * 109.47016 * 56.52685 * 15 13 12 35 35 H 1.09004 * 109.46764 * 296.53402 * 15 13 12 36 36 H 0.96995 * 120.00191 * 359.97438 * 16 15 13 37 37 H 1.09001 * 110.48620 * 214.35415 * 21 19 17 38 38 H 1.09004 * 110.48798 * 336.99248 * 21 19 17 39 39 H 1.09001 * 110.75744 * 156.25305 * 22 21 19 40 40 H 1.09000 * 110.75698 * 279.63123 * 22 21 19 41 41 H 1.09002 * 110.48578 * 203.38190 * 23 22 21 42 42 H 1.08998 * 110.60430 * 80.79077 * 23 22 21 43 43 H 1.09000 * 109.47095 * 180.02562 * 26 24 19 44 44 H 1.09004 * 113.61767 * 89.15664 * 29 13 12 45 45 H 1.09002 * 113.61698 * 220.06042 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 3.0660 -3.5644 0.4070 12 6 1.2601 -4.8282 0.5991 13 6 0.7204 -5.0797 -0.8187 14 1 -0.1911 -4.5260 -1.0436 15 6 0.6195 -6.5626 -1.1820 16 7 0.0211 -6.6999 -2.5121 17 6 -0.1668 -7.9242 -3.0435 18 8 0.1592 -8.9122 -2.4202 19 6 -0.7829 -8.0654 -4.4115 20 1 -1.7802 -7.6254 -4.4188 21 6 0.1070 -7.3751 -5.4656 22 6 0.9783 -8.5213 -6.0367 23 6 -0.0115 -9.7117 -6.0843 24 6 -0.8583 -9.5511 -4.8048 25 1 -0.4495 -10.1700 -4.0061 26 6 -2.3099 -9.9468 -5.0826 27 9 -3.0789 -9.7358 -3.9332 28 9 -2.8132 -9.1677 -6.1300 29 6 1.9977 -4.4027 -1.3428 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0016 32 1 0.4937 -4.5178 1.3093 33 1 1.8868 -5.6358 0.9774 34 1 -0.0033 -7.0748 -0.4487 35 1 1.6159 -7.0046 -1.1845 36 1 -0.2400 -5.9097 -3.0104 37 1 -0.5055 -6.9335 -6.2517 38 1 0.7340 -6.6161 -4.9976 39 1 1.3340 -8.2745 -7.0370 40 1 1.8136 -8.7398 -5.3714 41 1 0.5290 -10.6582 -6.0677 42 1 -0.6435 -9.6499 -6.9702 43 1 -2.3527 -11.0001 -5.3597 44 1 2.8267 -5.0936 -1.4965 45 1 1.8261 -3.7491 -2.1980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086386937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:39 Heat of formation + Delta-G solvation = -148.790486 kcal Electronic energy + Delta-G solvation = -26716.743545 eV Core-core repulsion = 22596.860917 eV Total energy + Delta-G solvation = -4119.882627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.93241 -47.90867 -41.35241 -40.06547 -38.18943 -36.03620 -34.98430 -32.18707 -31.31339 -30.67502 -28.30454 -26.44828 -25.93302 -25.57753 -23.34482 -22.58447 -21.61312 -20.64881 -19.79669 -19.36575 -18.94599 -18.03778 -17.78141 -17.46608 -17.12394 -16.69943 -16.36839 -15.99601 -15.84399 -15.41184 -15.21418 -14.82528 -14.74015 -14.65507 -14.35372 -14.30041 -13.82101 -13.73066 -13.49568 -13.29944 -12.93632 -12.92230 -12.63327 -12.50639 -12.21675 -12.20454 -12.07548 -12.06560 -11.95571 -11.76847 -11.58471 -11.48781 -11.46183 -11.00330 -10.87795 -10.68556 -10.08386 -9.00619 -7.95594 -5.24051 1.47901 1.50390 1.56523 1.57433 2.13945 2.55699 2.84390 3.24012 3.31449 3.36794 3.45913 3.69350 3.75674 3.78371 3.90204 3.92583 4.01939 4.12837 4.17085 4.31421 4.38216 4.39028 4.45245 4.56777 4.64022 4.71492 4.75056 4.78192 4.91730 4.92064 4.97984 5.09029 5.10485 5.14343 5.18714 5.28150 5.34364 5.39497 5.48318 5.54419 5.65410 6.27824 6.49633 7.17250 7.32869 8.10021 8.32293 9.27514 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.002415 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.954018 B =11590.821813 C =11789.281984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.060 0.940 12 C -0.135 4.135 13 C -0.103 4.103 14 H 0.079 0.921 15 C 0.141 3.859 16 N -0.718 5.718 17 C 0.519 3.481 18 O -0.578 6.578 19 C -0.111 4.111 20 H 0.102 0.898 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.138 4.138 25 H 0.111 0.889 26 C 0.261 3.739 27 F -0.223 7.223 28 F -0.210 7.210 29 C -0.151 4.151 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.092 0.908 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -22.644 -14.356 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.078 0.922 12 C -0.175 4.175 13 C -0.122 4.122 14 H 0.097 0.903 15 C 0.017 3.983 16 N -0.368 5.368 17 C 0.306 3.694 18 O -0.458 6.458 19 C -0.132 4.132 20 H 0.120 0.880 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.147 4.147 24 C -0.157 4.157 25 H 0.129 0.871 26 C 0.208 3.792 27 F -0.205 7.205 28 F -0.192 7.192 29 C -0.192 4.192 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.166 0.834 44 H 0.110 0.890 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.491 -23.157 -13.872 26.998 hybrid contribution -0.532 1.703 0.217 1.797 sum -1.023 -21.454 -13.655 25.451 Atomic orbital electron populations 1.69805 1.06593 1.26162 1.59438 1.25555 0.96370 1.01077 1.03719 0.85223 0.77200 0.79204 0.78208 1.20334 1.22291 1.20437 1.19636 0.91526 0.85181 1.41196 0.90539 1.42305 1.05314 1.00584 1.87637 1.21417 0.95038 0.84866 0.95274 0.92155 1.23351 0.99973 0.98731 0.95405 1.22486 0.98353 0.93682 0.97639 0.90270 1.21291 0.98181 0.95501 0.83315 1.45998 1.62980 1.08453 1.19407 1.20824 0.77588 0.82711 0.88281 1.90629 1.53032 1.38479 1.63663 1.21933 1.01472 0.97723 0.92057 0.88012 1.22446 0.97544 0.98128 0.97078 1.22489 0.97334 0.94086 1.02013 1.22380 0.97174 1.00049 0.95132 1.23000 0.93894 0.96474 1.02340 0.87105 1.22325 0.87344 0.97127 0.72451 1.92965 1.78294 1.96582 1.52646 1.92957 1.89064 1.78690 1.58468 1.23725 0.97183 0.99161 0.99119 0.94008 0.79394 0.92504 0.87627 0.92234 0.91256 0.75386 0.88805 0.90955 0.89050 0.92199 0.89200 0.89291 0.83398 0.88980 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.32 9.97 84.04 0.84 -12.49 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.50 5.31 -320.16 -1.70 -37.20 16 10 C 0.14 5.44 4.57 45.58 0.21 5.65 16 11 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 12 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 13 C -0.10 -2.92 3.62 -10.27 -0.04 -2.96 16 14 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.14 3.55 5.50 86.38 0.47 4.02 16 16 N -0.72 -16.66 5.23 -463.05 -2.42 -19.08 16 17 C 0.52 12.74 7.09 87.66 0.62 13.36 16 18 O -0.58 -17.97 15.21 -3.04 -0.05 -18.02 16 19 C -0.11 -2.03 2.58 -10.82 -0.03 -2.06 16 20 H 0.10 1.91 7.32 -2.39 -0.02 1.89 16 21 C -0.11 -1.65 6.31 31.67 0.20 -1.45 16 22 C -0.12 -1.51 6.91 31.89 0.22 -1.29 16 23 C -0.11 -1.18 6.29 31.67 0.20 -0.98 16 24 C -0.14 -2.17 2.75 -10.07 -0.03 -2.20 16 25 H 0.11 2.17 6.39 -2.39 -0.02 2.16 16 26 C 0.26 3.82 4.73 71.98 0.34 4.16 16 27 F -0.22 -4.83 16.91 44.97 0.76 -4.07 16 28 F -0.21 -3.50 16.09 44.97 0.72 -2.78 16 29 C -0.15 -4.72 7.44 31.18 0.23 -4.49 16 30 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 31 H 0.37 19.78 7.90 -92.71 -0.73 19.05 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.65 8.10 -2.39 -0.02 2.63 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.74 7.87 -2.39 -0.02 1.73 16 36 H 0.41 8.36 8.25 -92.71 -0.76 7.60 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.12 7.40 -2.38 -0.02 1.10 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.78 7.25 -2.39 -0.02 0.76 16 43 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 2.44 7.92 -2.38 -0.02 2.43 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.54 369.26 3.08 -65.47 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.49 Total: 34.90 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 3.94 Total: -8.41 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -3.84 Total: -114.67 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.05 Total: -18.02 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 1.48 Total: -6.85 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -68.54 3.08 -65.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086386937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.324 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds