Wall clock time and date at job start Tue Mar 31 2020 10:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48505 * 109.46883 * 239.99405 * 3 2 1 5 5 H 1.48499 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47382 * 119.99562 * 3 2 1 7 7 C 1.38811 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00133 * 0.28385 * 7 2 1 10 10 C 1.46504 * 119.99986 * 179.72096 * 9 7 2 11 11 H 1.08993 * 112.84973 * 25.33368 * 10 9 7 12 12 C 1.53785 * 113.61106 * 156.53165 * 10 9 7 13 13 C 1.53776 * 87.08081 * 89.11547 * 12 10 9 14 14 H 1.08996 * 113.61529 * 270.79563 * 13 12 10 15 15 C 1.53001 * 113.61241 * 139.97973 * 13 12 10 16 16 N 1.46497 * 109.47143 * 174.99868 * 15 13 12 17 17 C 1.34774 * 120.00104 * 180.02562 * 16 15 13 18 18 O 1.21285 * 119.99873 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00042 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.01635 * 334.45041 * 19 17 16 21 21 C 1.54269 * 110.03127 * 213.06845 * 19 17 16 22 22 C 1.54886 * 104.19812 * 217.10307 * 21 19 17 23 23 C 1.54886 * 102.74568 * 37.94139 * 22 21 19 24 24 C 1.53872 * 110.03493 * 95.90305 * 19 17 16 25 25 H 1.09006 * 110.02933 * 238.56628 * 24 19 17 26 26 C 1.52994 * 110.03152 * 359.97438 * 24 19 17 27 27 F 1.39900 * 109.46914 * 174.40799 * 26 24 19 28 28 F 1.39895 * 109.47605 * 294.40964 * 26 24 19 29 29 C 1.53779 * 113.61230 * 254.13403 * 10 9 7 30 30 H 0.97003 * 119.99759 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99726 * 359.72266 * 9 7 2 32 32 H 1.09001 * 113.61079 * 203.66584 * 12 10 9 33 33 H 1.08996 * 113.61165 * 334.47829 * 12 10 9 34 34 H 1.08998 * 109.46984 * 294.99922 * 15 13 12 35 35 H 1.08998 * 109.47373 * 54.99747 * 15 13 12 36 36 H 0.97001 * 119.99821 * 0.02562 * 16 15 13 37 37 H 1.09008 * 110.48610 * 335.78111 * 21 19 17 38 38 H 1.09003 * 110.48863 * 98.41863 * 21 19 17 39 39 H 1.09004 * 110.75949 * 156.25483 * 22 21 19 40 40 H 1.08998 * 110.75333 * 279.44064 * 22 21 19 41 41 H 1.09000 * 110.48853 * 80.74051 * 23 22 21 42 42 H 1.09003 * 110.48575 * 203.24840 * 23 22 21 43 43 H 1.09003 * 109.47354 * 54.41348 * 26 24 19 44 44 H 1.08999 * 113.61278 * 25.44027 * 29 10 9 45 45 H 1.09003 * 113.60845 * 156.33721 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 -0.0048 10 6 2.0580 -3.6568 -0.0104 11 1 3.0557 -3.5714 0.4198 12 6 1.2465 -4.8390 0.5454 13 6 0.7399 -5.0638 -0.8890 14 1 -0.1662 -4.5057 -1.1246 15 6 0.6477 -6.5396 -1.2821 16 7 0.0466 -6.6537 -2.6132 17 6 -0.1357 -7.8682 -3.1684 18 8 0.1984 -8.8666 -2.5663 19 6 -0.7536 -7.9856 -4.5379 20 1 -1.3823 -7.1182 -4.7391 21 6 -1.5909 -9.2779 -4.6309 22 6 -1.3532 -9.7814 -6.0762 23 6 0.1427 -9.4550 -6.3102 24 6 0.3486 -8.0982 -5.6057 25 1 0.2551 -7.2855 -6.3260 26 6 1.7268 -8.0552 -4.9427 27 9 2.7149 -8.2858 -5.9059 28 9 1.9260 -6.7981 -4.3620 29 6 2.0324 -4.3768 -1.3690 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0049 32 1 1.8645 -5.6536 0.9230 33 1 0.4649 -4.5417 1.2445 34 1 1.6469 -6.9749 -1.2962 35 1 0.0302 -7.0707 -0.5578 36 1 -0.2203 -5.8552 -3.0949 37 1 -1.2384 -10.0137 -3.9078 38 1 -2.6470 -9.0606 -4.4713 39 1 -1.5298 -10.8548 -6.1454 40 1 -1.9844 -9.2414 -6.7820 41 1 0.7751 -10.2193 -5.8585 42 1 0.3522 -9.3692 -7.3764 43 1 1.7838 -8.8243 -4.1725 44 1 1.8839 -3.7065 -2.2156 45 1 2.8650 -5.0653 -1.5139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086386939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:48 Heat of formation + Delta-G solvation = -122.462038 kcal Electronic energy + Delta-G solvation = -27365.372412 eV Core-core repulsion = 23246.631472 eV Total energy + Delta-G solvation = -4118.740940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.09480 -47.08820 -40.50698 -38.73856 -37.45964 -34.68029 -33.20438 -30.84926 -30.35562 -29.66385 -27.16562 -25.03802 -24.92587 -23.74047 -22.24198 -21.47549 -21.22112 -19.79368 -18.38807 -18.15478 -17.57445 -17.17936 -17.14822 -16.43729 -15.68634 -15.58932 -15.08561 -14.80354 -14.61349 -14.12748 -14.07279 -13.94585 -13.57870 -13.42521 -13.37407 -13.20688 -12.90809 -12.44119 -12.24530 -11.98527 -11.89162 -11.73657 -11.49951 -11.45514 -11.33926 -11.05240 -11.02884 -10.89730 -10.82772 -10.48400 -10.20595 -10.11725 -9.75698 -9.68464 -9.45131 -8.99239 -8.87005 -6.99931 -5.80905 -3.09713 2.40952 3.07038 3.42512 3.46902 3.47842 3.51486 3.83118 3.94354 4.07923 4.53978 4.55840 4.62225 4.68703 4.79386 5.00352 5.02494 5.05970 5.06971 5.10032 5.14636 5.25496 5.26942 5.45713 5.47508 5.61160 5.63691 5.66317 5.71963 5.73332 5.86900 5.95577 5.97024 6.11489 6.23708 6.38198 6.40449 6.60165 6.78132 6.91233 7.06176 7.45781 7.68674 8.09676 8.38519 9.49058 10.06753 10.41067 11.41580 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.002761 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.707857 B =10137.380316 C =10425.848188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.147 4.147 13 C -0.119 4.119 14 H 0.092 0.908 15 C 0.131 3.869 16 N -0.709 5.709 17 C 0.509 3.491 18 O -0.548 6.548 19 C -0.108 4.108 20 H 0.101 0.899 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.105 0.895 26 C 0.251 3.749 27 F -0.205 7.205 28 F -0.194 7.194 29 C -0.165 4.165 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.118 0.882 44 H 0.066 0.934 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -20.764 -12.371 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.345 5.345 10 C 0.054 3.946 11 H 0.079 0.921 12 C -0.187 4.187 13 C -0.137 4.137 14 H 0.110 0.890 15 C 0.008 3.992 16 N -0.358 5.358 17 C 0.294 3.706 18 O -0.427 6.427 19 C -0.130 4.130 20 H 0.120 0.880 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.152 4.152 24 C -0.147 4.147 25 H 0.123 0.877 26 C 0.197 3.803 27 F -0.187 7.187 28 F -0.175 7.175 29 C -0.206 4.206 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.512 -21.235 -11.898 24.471 hybrid contribution 0.087 1.557 -0.339 1.596 sum -2.425 -19.678 -12.237 23.299 Atomic orbital electron populations 1.69650 1.05135 1.25875 1.57521 1.24755 0.95541 0.97770 1.02821 0.86244 0.78522 0.83376 0.77911 1.21217 1.21687 1.21194 1.19247 0.91098 0.83991 1.42935 0.91063 1.42158 1.05650 0.99436 1.87229 1.21067 0.94976 0.85592 0.92933 0.92118 1.23415 1.00581 0.99681 0.94991 1.22738 0.99655 0.92980 0.98352 0.88954 1.21487 0.97966 0.97261 0.82483 1.46114 1.61988 1.08130 1.19597 1.20446 0.78956 0.83662 0.87494 1.90686 1.51857 1.36403 1.63751 1.21965 0.97132 1.02060 0.91830 0.88029 1.22408 0.99336 0.95388 0.97995 1.22476 0.95426 1.01562 0.96385 1.22344 0.97616 0.94523 1.00720 1.22793 0.92032 1.02083 0.97796 0.87709 1.22319 0.86173 0.84176 0.87582 1.92972 1.64766 1.94686 1.66254 1.93054 1.95677 1.44022 1.84760 1.23898 0.95458 0.99508 1.01748 0.93411 0.78138 0.90504 0.91361 0.91602 0.91845 0.76130 0.89279 0.90743 0.90661 0.90975 0.90597 0.90324 0.86497 0.91506 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.43 5.31 -52.63 -0.28 -17.71 16 10 C 0.17 3.27 4.55 -67.11 -0.31 2.96 16 11 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 12 C -0.15 -2.36 7.38 -25.92 -0.19 -2.55 16 13 C -0.12 -1.77 3.64 -89.67 -0.33 -2.10 16 14 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 15 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 16 N -0.71 -8.41 4.24 -60.30 -0.26 -8.66 16 17 C 0.51 5.98 4.47 -10.99 -0.05 5.93 16 18 O -0.55 -8.02 14.65 5.55 0.08 -7.94 16 19 C -0.11 -0.92 3.28 -90.65 -0.30 -1.22 16 20 H 0.10 0.70 8.13 -51.93 -0.42 0.27 16 21 C -0.11 -0.85 6.32 -25.07 -0.16 -1.01 16 22 C -0.12 -0.71 6.91 -24.74 -0.17 -0.88 16 23 C -0.11 -0.77 6.07 -25.08 -0.15 -0.93 16 24 C -0.13 -1.05 3.07 -89.51 -0.27 -1.32 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 26 C 0.25 2.73 3.86 37.15 0.14 2.87 16 27 F -0.21 -2.42 17.01 2.25 0.04 -2.38 16 28 F -0.19 -2.53 14.91 2.25 0.03 -2.49 16 29 C -0.17 -2.81 7.45 -25.78 -0.19 -3.01 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.38 10.00 7.90 -40.82 -0.32 9.68 16 32 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.34 8.46 -40.82 -0.35 3.99 16 37 H 0.09 0.83 6.92 -51.92 -0.36 0.47 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.12 1.34 6.43 -51.93 -0.33 1.00 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.07 7.90 -51.93 -0.41 0.66 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -31.33 365.10 -8.62 -39.95 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.20 Total: 10.41 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.24 Total: -6.80 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.19 Total: -53.48 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.08 Total: -7.94 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.07 Total: -4.87 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.33 -8.62 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086386939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.507 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds