Wall clock time and date at job start Tue Mar 31 2020 10:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48505 * 109.46883 * 239.99405 * 3 2 1 5 5 H 1.48499 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47382 * 119.99562 * 3 2 1 7 7 C 1.38811 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00133 * 0.28385 * 7 2 1 10 10 C 1.46504 * 119.99986 * 179.72096 * 9 7 2 11 11 H 1.08993 * 112.84973 * 25.33368 * 10 9 7 12 12 C 1.53785 * 113.61106 * 156.53165 * 10 9 7 13 13 C 1.53776 * 87.08081 * 89.11547 * 12 10 9 14 14 H 1.08996 * 113.61529 * 270.79563 * 13 12 10 15 15 C 1.53001 * 113.61241 * 139.97973 * 13 12 10 16 16 N 1.46497 * 109.47143 * 174.99868 * 15 13 12 17 17 C 1.34774 * 120.00104 * 180.02562 * 16 15 13 18 18 O 1.21285 * 119.99873 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00042 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.01635 * 334.45041 * 19 17 16 21 21 C 1.54269 * 110.03127 * 213.06845 * 19 17 16 22 22 C 1.54886 * 104.19812 * 217.10307 * 21 19 17 23 23 C 1.54886 * 102.74568 * 37.94139 * 22 21 19 24 24 C 1.53872 * 110.03493 * 95.90305 * 19 17 16 25 25 H 1.09006 * 110.02933 * 238.56628 * 24 19 17 26 26 C 1.52994 * 110.03152 * 359.97438 * 24 19 17 27 27 F 1.39900 * 109.46914 * 174.40799 * 26 24 19 28 28 F 1.39895 * 109.47605 * 294.40964 * 26 24 19 29 29 C 1.53779 * 113.61230 * 254.13403 * 10 9 7 30 30 H 0.97003 * 119.99759 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99726 * 359.72266 * 9 7 2 32 32 H 1.09001 * 113.61079 * 203.66584 * 12 10 9 33 33 H 1.08996 * 113.61165 * 334.47829 * 12 10 9 34 34 H 1.08998 * 109.46984 * 294.99922 * 15 13 12 35 35 H 1.08998 * 109.47373 * 54.99747 * 15 13 12 36 36 H 0.97001 * 119.99821 * 0.02562 * 16 15 13 37 37 H 1.09008 * 110.48610 * 335.78111 * 21 19 17 38 38 H 1.09003 * 110.48863 * 98.41863 * 21 19 17 39 39 H 1.09004 * 110.75949 * 156.25483 * 22 21 19 40 40 H 1.08998 * 110.75333 * 279.44064 * 22 21 19 41 41 H 1.09000 * 110.48853 * 80.74051 * 23 22 21 42 42 H 1.09003 * 110.48575 * 203.24840 * 23 22 21 43 43 H 1.09003 * 109.47354 * 54.41348 * 26 24 19 44 44 H 1.08999 * 113.61278 * 25.44027 * 29 10 9 45 45 H 1.09003 * 113.60845 * 156.33721 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 -0.0048 10 6 2.0580 -3.6568 -0.0104 11 1 3.0557 -3.5714 0.4198 12 6 1.2465 -4.8390 0.5454 13 6 0.7399 -5.0638 -0.8890 14 1 -0.1662 -4.5057 -1.1246 15 6 0.6477 -6.5396 -1.2821 16 7 0.0466 -6.6537 -2.6132 17 6 -0.1357 -7.8682 -3.1684 18 8 0.1984 -8.8666 -2.5663 19 6 -0.7536 -7.9856 -4.5379 20 1 -1.3823 -7.1182 -4.7391 21 6 -1.5909 -9.2779 -4.6309 22 6 -1.3532 -9.7814 -6.0762 23 6 0.1427 -9.4550 -6.3102 24 6 0.3486 -8.0982 -5.6057 25 1 0.2551 -7.2855 -6.3260 26 6 1.7268 -8.0552 -4.9427 27 9 2.7149 -8.2858 -5.9059 28 9 1.9260 -6.7981 -4.3620 29 6 2.0324 -4.3768 -1.3690 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0049 32 1 1.8645 -5.6536 0.9230 33 1 0.4649 -4.5417 1.2445 34 1 1.6469 -6.9749 -1.2962 35 1 0.0302 -7.0707 -0.5578 36 1 -0.2203 -5.8552 -3.0949 37 1 -1.2384 -10.0137 -3.9078 38 1 -2.6470 -9.0606 -4.4713 39 1 -1.5298 -10.8548 -6.1454 40 1 -1.9844 -9.2414 -6.7820 41 1 0.7751 -10.2193 -5.8585 42 1 0.3522 -9.3692 -7.3764 43 1 1.7838 -8.8243 -4.1725 44 1 1.8839 -3.7065 -2.2156 45 1 2.8650 -5.0653 -1.5139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086386939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:47 Heat of formation + Delta-G solvation = -141.129994 kcal Electronic energy + Delta-G solvation = -27366.181915 eV Core-core repulsion = 23246.631472 eV Total energy + Delta-G solvation = -4119.550444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.01253 -48.02093 -41.39614 -40.08641 -38.26229 -35.99129 -34.95021 -32.16523 -31.40577 -30.59719 -28.38776 -26.44679 -25.85151 -25.52287 -23.43512 -22.53693 -21.76158 -20.72650 -19.75637 -19.32538 -18.99975 -18.35051 -18.06600 -17.37039 -16.78943 -16.49850 -16.35392 -16.09501 -15.68035 -15.60293 -15.19541 -14.91191 -14.72792 -14.65158 -14.46564 -14.31872 -14.12566 -13.76042 -13.30498 -13.11760 -12.93856 -12.91828 -12.66829 -12.62429 -12.31683 -12.20415 -12.08589 -12.06440 -11.98164 -11.70905 -11.54572 -11.50351 -11.48082 -10.99318 -10.88227 -10.67847 -10.02464 -9.00410 -7.95800 -5.24024 1.47453 1.49953 1.50194 1.56042 2.17003 2.55443 2.72311 3.17257 3.18802 3.35294 3.36564 3.68712 3.73765 3.78428 3.85308 3.91686 4.02887 4.15066 4.24065 4.31879 4.39016 4.41366 4.43331 4.45558 4.52834 4.71935 4.73263 4.77107 4.91534 4.98477 4.99047 5.10391 5.11262 5.17993 5.19696 5.28668 5.34745 5.43749 5.49239 5.55204 5.65400 6.27915 6.52521 7.17114 7.32971 8.09784 8.32723 9.27289 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.002761 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.707857 B =10137.380316 C =10425.848188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.719 5.719 10 C 0.144 3.856 11 H 0.057 0.943 12 C -0.133 4.133 13 C -0.100 4.100 14 H 0.082 0.918 15 C 0.141 3.859 16 N -0.709 5.709 17 C 0.507 3.493 18 O -0.579 6.579 19 C -0.105 4.105 20 H 0.124 0.876 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.122 4.122 25 H 0.120 0.880 26 C 0.247 3.753 27 F -0.212 7.212 28 F -0.208 7.208 29 C -0.151 4.151 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.045 0.955 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 -21.671 -13.586 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.075 0.925 12 C -0.172 4.172 13 C -0.119 4.119 14 H 0.101 0.899 15 C 0.018 3.982 16 N -0.358 5.358 17 C 0.294 3.706 18 O -0.460 6.460 19 C -0.126 4.126 20 H 0.142 0.858 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.141 4.141 25 H 0.138 0.862 26 C 0.193 3.807 27 F -0.193 7.193 28 F -0.189 7.189 29 C -0.192 4.192 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.063 0.937 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.611 -22.179 -13.126 25.904 hybrid contribution 0.204 1.750 0.065 1.763 sum -2.407 -20.429 -13.061 24.366 Atomic orbital electron populations 1.69799 1.06510 1.26168 1.59403 1.25536 0.96399 1.00993 1.03683 0.85231 0.77230 0.79269 0.78153 1.20514 1.22109 1.20432 1.19620 0.91468 0.85250 1.41266 0.90762 1.42275 1.05312 1.00489 1.87679 1.21381 0.94990 0.85051 0.95197 0.92524 1.23313 1.00002 0.98498 0.95392 1.22513 0.98174 0.93882 0.97288 0.89929 1.21254 0.97989 0.95536 0.83455 1.46102 1.61859 1.08714 1.19150 1.21009 0.78240 0.82866 0.88440 1.90673 1.53138 1.37338 1.64861 1.22065 0.97378 1.03606 0.89583 0.85825 1.22412 0.99716 0.94304 0.98693 1.22468 0.94789 1.02357 0.95365 1.22389 0.98284 0.93307 1.01242 1.22838 0.89909 1.03611 0.97750 0.86232 1.22507 0.87470 0.83187 0.87533 1.92955 1.65301 1.94670 1.66365 1.93020 1.95878 1.44914 1.85123 1.23709 0.97251 0.99093 0.99131 0.93966 0.79290 0.87769 0.92152 0.92002 0.91634 0.75409 0.91440 0.89477 0.89783 0.89270 0.91475 0.88950 0.87498 0.93653 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 3 Si 0.97 45.97 29.55 68.60 2.03 47.99 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -35.91 5.31 -320.44 -1.70 -37.61 16 10 C 0.14 5.60 4.55 45.52 0.21 5.81 16 11 H 0.06 2.23 8.11 -2.39 -0.02 2.21 16 12 C -0.13 -4.10 7.38 31.12 0.23 -3.88 16 13 C -0.10 -2.89 3.64 -10.18 -0.04 -2.93 16 14 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 15 C 0.14 3.58 5.51 86.38 0.48 4.05 16 16 N -0.71 -16.00 4.24 -463.06 -1.96 -17.96 16 17 C 0.51 11.38 4.47 87.66 0.39 11.77 16 18 O -0.58 -16.69 14.65 -3.04 -0.04 -16.73 16 19 C -0.10 -1.57 3.28 -10.81 -0.04 -1.61 16 20 H 0.12 1.33 8.13 -2.39 -0.02 1.31 16 21 C -0.11 -1.48 6.32 31.67 0.20 -1.28 16 22 C -0.11 -1.00 6.91 31.88 0.22 -0.78 16 23 C -0.11 -1.30 6.07 31.67 0.19 -1.11 16 24 C -0.12 -1.77 3.07 -10.07 -0.03 -1.80 16 25 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 26 C 0.25 5.16 3.86 71.98 0.28 5.44 16 27 F -0.21 -4.81 17.01 44.97 0.77 -4.05 16 28 F -0.21 -5.25 14.91 44.97 0.67 -4.58 16 29 C -0.15 -5.05 7.45 31.21 0.23 -4.82 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.37 19.90 7.90 -92.71 -0.73 19.16 16 32 H 0.10 2.67 8.10 -2.39 -0.02 2.65 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.65 7.85 -2.39 -0.02 1.63 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 8.29 8.46 -92.71 -0.78 7.50 16 37 H 0.07 1.20 6.92 -2.38 -0.02 1.19 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.89 7.86 -2.39 -0.02 0.87 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.11 2.45 6.43 -2.39 -0.02 2.43 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 2.55 7.90 -2.39 -0.02 2.53 16 Total: -1.00 -67.78 365.10 3.15 -64.63 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.51 Total: 34.28 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 3.63 Total: -7.60 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.38 Total: -113.94 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.04 Total: -16.73 kcal Atomic # 9 Polarization: -10.07 SS G_CDS: 1.44 Total: -8.63 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -67.78 3.15 -64.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086386939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.500 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds