Wall clock time and date at job start Tue Mar 31 2020 10:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08997 * 112.84935 * 336.19024 * 10 9 7 12 12 C 1.53774 * 113.61455 * 107.50577 * 10 9 7 13 13 C 1.53779 * 87.08337 * 89.11402 * 12 10 9 14 14 H 1.08999 * 113.61022 * 270.88477 * 13 12 10 15 15 C 1.52994 * 113.61649 * 139.97977 * 13 12 10 16 16 N 1.46500 * 109.47119 * 87.50016 * 15 13 12 17 17 C 1.34781 * 120.00146 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99855 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00359 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.47085 * 300.00433 * 19 17 16 21 21 C 1.52996 * 109.46920 * 59.99817 * 19 17 16 22 22 C 1.53001 * 109.47102 * 180.02562 * 21 19 17 23 23 C 1.52994 * 109.47204 * 300.00235 * 22 21 19 24 24 C 1.53005 * 109.47131 * 59.99904 * 23 22 21 25 25 C 1.52993 * 109.47168 * 180.02562 * 19 17 16 26 26 F 1.39902 * 109.47003 * 299.99709 * 25 19 17 27 27 F 1.39892 * 109.47511 * 59.99940 * 25 19 17 28 28 C 1.53783 * 87.08093 * 25.43241 * 13 12 10 29 29 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 31 31 H 1.09004 * 113.61359 * 203.66626 * 12 10 9 32 32 H 1.08995 * 113.61532 * 334.55921 * 12 10 9 33 33 H 1.08997 * 109.47639 * 207.50123 * 15 13 12 34 34 H 1.09009 * 109.47145 * 327.50720 * 15 13 12 35 35 H 0.96998 * 120.00487 * 0.02562 * 16 15 13 36 36 H 1.09003 * 109.47462 * 300.00176 * 21 19 17 37 37 H 1.09000 * 109.47056 * 60.00047 * 21 19 17 38 38 H 1.09000 * 109.47178 * 180.02562 * 22 21 19 39 39 H 1.09004 * 109.47031 * 60.00538 * 22 21 19 40 40 H 1.08997 * 109.47639 * 299.99799 * 23 22 21 41 41 H 1.09002 * 109.47357 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47233 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.46838 * 59.99860 * 24 23 22 44 44 H 1.09004 * 113.61197 * 220.01939 * 28 13 12 45 45 H 1.08995 * 113.61664 * 89.11568 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 3.0657 -3.5659 -0.3924 12 6 1.9992 -4.3950 1.3612 13 6 0.7206 -5.0747 0.8435 14 1 -0.1901 -4.5184 1.0654 15 6 0.6198 -6.5553 1.2158 16 7 -0.0121 -6.6861 2.5311 17 6 -0.2069 -7.9075 3.0667 18 8 0.1415 -8.8983 2.4599 19 6 -0.8574 -8.0422 4.4193 20 1 -0.2571 -7.5204 5.1647 21 6 -2.2590 -7.4306 4.3743 22 6 -2.9193 -7.5667 5.7478 23 6 -3.0205 -9.0471 6.1205 24 6 -1.6187 -9.6587 6.1656 25 6 -0.9580 -9.5227 4.7917 26 9 -1.7282 -10.1928 3.8351 27 9 0.3238 -10.0814 4.8330 28 6 1.2603 -4.8319 -0.5759 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0068 31 1 2.8281 -5.0854 1.5175 32 1 1.8294 -3.7363 2.2128 33 1 0.0194 -7.0773 0.4708 34 1 1.6186 -6.9907 1.2477 35 1 -0.2910 -5.8938 3.0162 36 1 -2.1869 -6.3757 4.1092 37 1 -2.8593 -7.9522 3.6289 38 1 -3.9180 -7.1314 5.7156 39 1 -2.3189 -7.0446 6.4929 40 1 -3.6209 -9.5692 5.3755 41 1 -3.4904 -9.1441 7.0992 42 1 -1.6908 -10.7132 6.4315 43 1 -1.0183 -9.1366 6.9106 44 1 0.4939 -4.5258 -1.2880 45 1 1.8872 -5.6416 -0.9491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086438832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:17 Heat of formation + Delta-G solvation = -126.982299 kcal Electronic energy + Delta-G solvation = -26980.202043 eV Core-core repulsion = 22861.265089 eV Total energy + Delta-G solvation = -4118.936953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.04692 -47.00599 -40.07360 -38.64734 -37.57655 -34.71472 -33.27031 -31.94550 -30.39485 -30.10672 -27.37062 -25.08940 -24.32290 -23.63922 -23.03444 -21.72580 -20.84034 -20.24121 -18.51200 -17.86603 -17.37579 -17.19257 -16.91501 -16.27776 -15.63251 -15.48889 -15.00420 -14.74801 -14.38841 -14.34424 -14.06028 -13.92321 -13.61298 -13.45570 -13.30340 -13.23467 -12.91903 -12.81996 -12.45118 -12.31222 -12.03857 -11.93933 -11.88419 -11.42372 -11.29969 -11.18223 -11.07346 -10.87733 -10.68275 -10.51519 -10.20451 -10.11605 -9.77783 -9.72461 -9.47778 -9.04099 -8.91578 -7.03757 -5.84319 -3.13360 2.49060 2.94255 3.39341 3.44903 3.46186 3.46855 3.66779 3.96387 4.08235 4.44731 4.52676 4.54000 4.62619 4.68028 4.72945 4.89288 5.02220 5.04885 5.15025 5.18185 5.21595 5.40550 5.42112 5.45289 5.48490 5.59221 5.61548 5.63621 5.68013 5.84067 5.84437 5.93038 6.07658 6.18972 6.34404 6.36684 6.56025 6.70887 6.86775 7.00917 7.40261 7.65864 8.10698 8.34964 9.45697 10.03021 10.37305 11.38139 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.002500 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.896203 B =11195.686159 C =11911.969554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.719 5.719 17 C 0.514 3.486 18 O -0.527 6.527 19 C -0.153 4.153 20 H 0.124 0.876 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.159 4.159 25 C 0.314 3.686 26 F -0.189 7.189 27 F -0.193 7.193 28 C -0.148 4.148 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -18.142 13.688 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.371 5.371 17 C 0.299 3.701 18 O -0.403 6.403 19 C -0.175 4.175 20 H 0.141 0.859 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.197 4.197 25 C 0.277 3.723 26 F -0.170 7.170 27 F -0.174 7.174 28 C -0.188 4.188 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.668 -18.707 13.187 23.579 hybrid contribution 0.097 1.185 0.210 1.208 sum -5.571 -17.522 13.397 22.750 Atomic orbital electron populations 1.69654 1.05140 1.25803 1.57501 1.24760 0.95545 0.97794 1.02775 0.86171 0.78662 0.83657 0.77586 1.21633 1.21754 1.20701 1.19294 0.91130 0.83964 1.42939 0.90991 1.42174 1.05672 0.99446 1.87151 1.21055 0.95126 0.85585 0.92734 0.91947 1.23891 0.95681 0.99613 1.01769 1.22711 0.99570 0.92868 0.98665 0.88880 1.21510 0.97658 0.97123 0.82911 1.45992 1.62104 1.07758 1.21210 1.20110 0.79260 0.83873 0.86905 1.90776 1.50312 1.36992 1.62219 1.22483 1.00749 0.96102 0.98152 0.85858 1.21575 0.92385 1.01959 0.99180 1.21620 1.01825 0.96331 0.96258 1.21556 0.95212 0.96024 1.03117 1.22581 0.98437 1.04371 0.94320 1.20574 0.75620 0.87796 0.88335 1.93012 1.75082 1.82208 1.66728 1.93033 1.40520 1.86943 1.96911 1.23448 1.00512 0.99716 0.95085 0.93430 0.78123 0.91390 0.91518 0.91736 0.91487 0.76323 0.89653 0.90163 0.90366 0.91004 0.90693 0.90258 0.89141 0.88656 0.91298 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.08 5.31 -52.64 -0.28 -17.36 16 10 C 0.17 3.20 4.56 -67.12 -0.31 2.90 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.17 -2.73 7.43 -25.92 -0.19 -2.93 16 13 C -0.12 -1.74 3.63 -89.81 -0.33 -2.06 16 14 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 16 N -0.72 -8.54 5.45 -60.29 -0.33 -8.87 16 17 C 0.51 6.78 6.92 -10.98 -0.08 6.70 16 18 O -0.53 -9.23 14.83 5.55 0.08 -9.14 16 19 C -0.15 -1.45 2.18 -91.78 -0.20 -1.65 16 20 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.11 -0.83 4.98 -26.73 -0.13 -0.96 16 22 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 23 C -0.12 -0.67 5.80 -26.73 -0.16 -0.82 16 24 C -0.16 -1.08 5.46 -26.70 -0.15 -1.22 16 25 C 0.31 3.38 1.37 -26.71 -0.04 3.34 16 26 F -0.19 -2.52 15.11 2.25 0.03 -2.49 16 27 F -0.19 -2.62 16.15 2.25 0.04 -2.59 16 28 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.38 9.82 7.90 -40.82 -0.32 9.49 16 31 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.94 7.84 -51.92 -0.41 0.54 16 35 H 0.40 3.94 7.89 -40.82 -0.32 3.62 16 36 H 0.08 0.54 7.56 -51.93 -0.39 0.15 16 37 H 0.08 0.69 7.80 -51.93 -0.41 0.29 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.48 7.80 -51.93 -0.41 0.07 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -32.95 365.86 -8.71 -41.66 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.28 Total: 8.56 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.19 Total: -5.48 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.12 Total: -52.92 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.07 Total: -5.08 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.95 -8.71 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086438832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.326 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds