Wall clock time and date at job start Tue Mar 31 2020 10:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48502 * 109.47272 * 269.99949 * 3 2 1 5 5 H 1.48496 * 109.47458 * 30.00163 * 3 2 1 6 6 H 1.48503 * 109.46951 * 150.00098 * 3 2 1 7 7 C 1.38814 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00160 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00211 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.90242 * 23.75242 * 10 9 7 12 12 C 1.53781 * 113.61517 * 154.99902 * 10 9 7 13 13 C 1.53783 * 87.08111 * 89.11936 * 12 10 9 14 14 H 1.09000 * 113.61210 * 270.80316 * 13 12 10 15 15 C 1.52999 * 113.61675 * 139.98104 * 13 12 10 16 16 N 1.46497 * 109.46992 * 175.00069 * 15 13 12 17 17 C 1.34777 * 119.99525 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 15 20 20 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 21 21 C 1.53004 * 109.47208 * 180.27843 * 19 17 16 22 22 C 1.52997 * 109.47000 * 179.97438 * 21 19 17 23 23 C 1.53005 * 109.47190 * 60.00434 * 22 21 19 24 24 C 1.53004 * 109.46795 * 299.99692 * 23 22 21 25 25 C 1.52996 * 109.47442 * 60.27868 * 19 17 16 26 26 F 1.39909 * 109.47020 * 300.00048 * 25 19 17 27 27 F 1.39897 * 109.47328 * 59.99785 * 25 19 17 28 28 C 1.53779 * 113.61688 * 252.50195 * 10 9 7 29 29 H 0.96997 * 119.99988 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99571 * 0.02562 * 9 7 2 31 31 H 1.09001 * 113.61570 * 334.57335 * 12 10 9 32 32 H 1.08999 * 113.61240 * 203.66563 * 12 10 9 33 33 H 1.08995 * 109.46838 * 54.99957 * 15 13 12 34 34 H 1.09001 * 109.46617 * 295.00292 * 15 13 12 35 35 H 0.97000 * 120.00580 * 0.02562 * 16 15 13 36 36 H 1.09000 * 109.46887 * 300.00372 * 21 19 17 37 37 H 1.08998 * 109.46846 * 59.99549 * 21 19 17 38 38 H 1.09004 * 109.46774 * 179.97438 * 22 21 19 39 39 H 1.08995 * 109.47672 * 299.99669 * 22 21 19 40 40 H 1.09000 * 109.47011 * 59.99136 * 23 22 21 41 41 H 1.08996 * 109.47069 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46846 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.46481 * 300.00167 * 24 23 22 44 44 H 1.09001 * 113.61494 * 156.33623 * 28 10 9 45 45 H 1.08997 * 113.61247 * 25.42874 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0664 -3.5648 0.4020 12 6 1.2605 -4.8291 0.5939 13 6 0.7198 -5.0788 -0.8239 14 1 -0.1919 -4.5246 -1.0473 15 6 0.6186 -6.5611 -1.1890 16 7 -0.0142 -6.6982 -2.5031 17 6 -0.2084 -7.9221 -3.0331 18 8 0.1404 -8.9100 -2.4219 19 6 -0.8649 -8.0635 -4.3821 20 1 -1.8627 -7.6258 -4.3483 21 6 -0.9706 -9.5461 -4.7451 22 6 -1.6378 -9.6896 -6.1144 23 6 -0.7988 -8.9650 -7.1690 24 6 -0.6932 -7.4824 -6.8060 25 6 -0.0256 -7.3390 -5.4363 26 9 0.0710 -5.9832 -5.1045 27 9 1.2549 -7.9007 -5.4798 28 6 1.9981 -4.4015 -1.3458 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 0.4947 -4.5195 1.3051 32 1 1.8877 -5.6371 0.9706 33 1 0.0188 -7.0794 -0.4410 34 1 1.6174 -6.9967 -1.2194 35 1 -0.2928 -5.9082 -2.9922 36 1 0.0271 -9.9838 -4.7788 37 1 -1.5685 -10.0623 -3.9940 38 1 -1.7126 -10.7458 -6.3732 39 1 -2.6354 -9.2520 -6.0802 40 1 0.1989 -9.4026 -7.2031 41 1 -1.2739 -9.0676 -8.1446 42 1 -0.0959 -6.9660 -7.5575 43 1 -1.6909 -7.0448 -6.7718 44 1 2.8268 -5.0927 -1.4993 45 1 1.8276 -3.7469 -2.2004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086438833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:21 Heat of formation + Delta-G solvation = -126.914382 kcal Electronic energy + Delta-G solvation = -27320.176347 eV Core-core repulsion = 23201.242338 eV Total energy + Delta-G solvation = -4118.934008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.30926 -47.26007 -40.06458 -38.64490 -37.51547 -34.67737 -33.21276 -31.85694 -30.56818 -30.02595 -27.38292 -25.03417 -24.27368 -23.46095 -23.16427 -21.67695 -20.85406 -20.29114 -18.48876 -17.83230 -17.52886 -17.21121 -16.95048 -16.39985 -16.07487 -15.16638 -14.85794 -14.74941 -14.51174 -14.32843 -14.05368 -14.00248 -13.58700 -13.55525 -13.36493 -13.29602 -12.95515 -12.85166 -12.52475 -12.25509 -12.08177 -11.89634 -11.76714 -11.37399 -11.30493 -11.13640 -11.03534 -10.83618 -10.72957 -10.47383 -10.18448 -10.10011 -9.76587 -9.68299 -9.44810 -9.00446 -8.87289 -6.99390 -5.80304 -3.09138 2.36940 3.01439 3.39432 3.42347 3.47658 3.49199 3.70123 3.82070 4.01674 4.44566 4.52254 4.54884 4.56343 4.72757 4.76211 4.87554 5.07144 5.09627 5.15016 5.20397 5.26144 5.36604 5.46148 5.47653 5.54589 5.62981 5.64918 5.72034 5.73930 5.87380 5.92522 5.96959 6.11769 6.23663 6.38800 6.40870 6.60499 6.78042 6.91647 7.06420 7.45487 7.69701 8.10546 8.39007 9.49627 10.07305 10.41627 11.42234 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.002799 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.900084 B =10000.485696 C =10758.980607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.718 5.718 17 C 0.513 3.487 18 O -0.534 6.534 19 C -0.150 4.150 20 H 0.125 0.875 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.157 4.157 25 C 0.298 3.702 26 F -0.193 7.193 27 F -0.191 7.191 28 C -0.168 4.168 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -20.040 -14.040 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.370 5.370 17 C 0.297 3.703 18 O -0.411 6.411 19 C -0.172 4.172 20 H 0.143 0.857 21 C -0.137 4.137 22 C -0.162 4.162 23 C -0.159 4.159 24 C -0.195 4.195 25 C 0.261 3.739 26 F -0.174 7.174 27 F -0.172 7.172 28 C -0.209 4.209 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.376 -20.525 -13.540 24.976 hybrid contribution 0.066 1.515 -0.266 1.539 sum -4.311 -19.011 -13.806 23.887 Atomic orbital electron populations 1.69659 1.05134 1.25757 1.57570 1.24761 0.95547 0.97783 1.02834 0.86166 0.78669 0.83681 0.77536 1.21682 1.21765 1.20697 1.19296 0.91128 0.83972 1.42829 0.90994 1.42168 1.05678 0.99442 1.87134 1.21054 0.95090 0.85577 0.92750 0.91947 1.23443 1.00484 0.99708 0.95054 1.22712 0.99662 0.92846 0.98625 0.88904 1.21516 0.97636 0.97212 0.82932 1.46245 1.61404 1.08148 1.21205 1.20125 0.79442 0.83803 0.86882 1.90697 1.50752 1.37483 1.62200 1.22471 1.01418 1.00706 0.92606 0.85735 1.21374 1.03419 0.91574 0.97366 1.21658 0.99149 1.01445 0.93965 1.21565 1.01817 0.92990 0.99572 1.22554 1.02975 0.99965 0.93984 1.20914 0.80723 0.75483 0.96739 1.93017 1.96511 1.34271 1.93576 1.93035 1.41840 1.84879 1.97418 1.23890 0.95629 0.99640 1.01762 0.93461 0.78121 0.91306 0.90459 0.91708 0.91512 0.75745 0.90051 0.89672 0.90531 0.91239 0.90692 0.90240 0.88932 0.88401 0.91420 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.58 5.31 -52.64 -0.28 -17.86 16 10 C 0.17 3.34 4.56 -67.12 -0.31 3.03 16 11 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 12 C -0.15 -2.41 7.39 -25.92 -0.19 -2.60 16 13 C -0.12 -1.87 3.63 -89.80 -0.33 -2.20 16 14 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 15 C 0.13 1.85 5.51 -4.04 -0.02 1.83 16 16 N -0.72 -9.61 5.25 -60.30 -0.32 -9.93 16 17 C 0.51 6.91 6.89 -10.98 -0.08 6.83 16 18 O -0.53 -8.84 15.98 5.55 0.09 -8.76 16 19 C -0.15 -1.44 2.23 -91.77 -0.20 -1.64 16 20 H 0.12 0.89 8.14 -51.92 -0.42 0.47 16 21 C -0.10 -0.83 4.37 -26.73 -0.12 -0.95 16 22 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 23 C -0.12 -0.67 5.80 -26.73 -0.16 -0.83 16 24 C -0.16 -1.04 5.46 -26.71 -0.15 -1.18 16 25 C 0.30 2.97 1.63 -26.71 -0.04 2.93 16 26 F -0.19 -2.28 14.85 2.25 0.03 -2.24 16 27 F -0.19 -2.38 15.74 2.25 0.04 -2.34 16 28 C -0.17 -2.94 7.43 -25.91 -0.19 -3.13 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.38 10.10 7.90 -40.82 -0.32 9.78 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.11 8.10 -51.93 -0.42 0.68 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.99 7.84 -51.93 -0.41 0.59 16 35 H 0.41 5.12 6.65 -40.82 -0.27 4.85 16 36 H 0.08 0.82 7.76 -51.93 -0.40 0.41 16 37 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.48 7.80 -51.93 -0.41 0.07 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -32.32 365.05 -8.68 -41.00 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.25 Total: 10.62 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.18 Total: -6.06 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.13 Total: -55.01 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.59 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.32 -8.68 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086438833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.919 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds